| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021306 |
Definition |
Mycobacterium phage Dumbo, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
REFSEQ |
Length |
75736 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
147 |
%GC |
62.99 |
Number of singletons |
1 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008051738.1 | NC_021306_p113 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 64976 | 65938 |
| YP_008051653.1 | NC_021306_p28 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 26985 | 27947 |
| YP_008051691.1 | NC_021306_p66 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 43074 | 43475 |
| YP_008051674.1 | NC_021306_p49 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 35902 | 36048 |
| YP_008051700.1 | NC_021306_p75 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 47251 | 47484 |
| YP_008051733.1 | NC_021306_p108 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 62803 | 63066 |
| YP_008051759.1 | NC_021306_p134 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 71522 | 71647 |
| YP_008051760.1 | NC_021306_p135 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 71637 | 71873 |
| YP_008051689.1 | NC_021306_p64 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 42764 | 42925 |
| YP_008051754.1 | NC_021306_p129 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 69752 | 70033 |
| YP_008051661.1 | NC_021306_p36 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32179 | 32595 |
| YP_008051686.1 | NC_021306_p61 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 42092 | 42397 |
| YP_008051714.1 | NC_021306_p89 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 53414 | 53782 |
| YP_008051677.1 | NC_021306_p52 | integrase (Y-int) | phrog_1 | integrase | integration and excision | 1 | 37289 | 38170 |
| YP_008051749.1 | NC_021306_p124 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 68151 | 68330 |
| YP_008051639.1 | NC_021306_p14 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 8610 | 9176 |
| YP_008051757.1 | NC_021306_p132 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 70868 | 71215 |
| YP_008051742.1 | NC_021306_p117 | hypothetical protein | phrog_23135 | unknown function | unknown function | 1 | 66559 | 66831 |
| YP_008051631.1 | NC_021306_p6 | hypothetical protein | phrog_4101 | unknown function | unknown function | -1 | 1685 | 1924 |
| YP_008051628.1 | NC_021306_p3 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 739 | 1032 |
| YP_008051679.1 | NC_021306_p54 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 38526 | 39299 |
| YP_008051687.1 | NC_021306_p62 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 42416 | 42523 |
| YP_008051762.1 | NC_021306_p137 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 72468 | 72851 |
| YP_008051756.1 | NC_021306_p131 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 70395 | 70853 |
| YP_008051670.1 | NC_021306_p45 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 35102 | 35275 |
| YP_008051740.1 | NC_021306_p115 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 66059 | 66232 |
| YP_008051656.1 | NC_021306_p31 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 28750 | 29034 |
| YP_008051634.1 | NC_021306_p9 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 3959 | 4180 |
| YP_008051724.1 | NC_021306_p99 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 58258 | 59496 |
| YP_008051630.1 | NC_021306_p5 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 1152 | 1613 |
| YP_008051636.1 | NC_021306_p11 | capsid maturation protease | phrog_2753 | head maturation protease | head and packaging | 1 | 5726 | 6727 |
| YP_008051660.1 | NC_021306_p35 | lysin B | phrog_102 | endolysin | lysis | 1 | 31325 | 32182 |
| YP_008051722.1 | NC_021306_p97 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 57387 | 57722 |
| YP_008051682.1 | NC_021306_p57 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 40146 | 40283 |
| YP_008051755.1 | NC_021306_p130 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 70030 | 70398 |
| YP_008051768.1 | NC_021306_p143 | hypothetical protein | phrog_5970 | unknown function | unknown function | -1 | 74021 | 74269 |
| YP_008051647.1 | NC_021306_p22 | tapemeasure | phrog_2723 | tail length tape measure protein | tail | 1 | 12804 | 17534 |
| YP_008051726.1 | NC_021306_p101 | Clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 60019 | 60825 |
| YP_008051744.1 | NC_021306_p119 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 67008 | 67262 |
| YP_008051702.1 | NC_021306_p77 | HNH endonuclease domain protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 47891 | 48208 |
| YP_008051703.1 | NC_021306_p78 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 48198 | 48434 |
| YP_008051633.1 | NC_021306_p8 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2277 | 3947 |
| YP_008051693.1 | NC_021306_p68 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 44437 | 44847 |
| YP_008051685.1 | NC_021306_p60 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 41270 | 41548 |
| YP_008051659.1 | NC_021306_p34 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 30990 | 31328 |
| YP_008051681.1 | NC_021306_p56 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 40051 | 40149 |
| YP_008051665.1 | NC_021306_p40 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 33700 | 33891 |
| YP_008051695.1 | NC_021306_p70 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 45555 | 45866 |
| YP_008051694.1 | NC_021306_p69 | Erf protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44840 | 45562 |
| YP_008051629.1 | NC_021306_p4 | hypothetical protein | phrog_8426 | unknown function | unknown function | 1 | 1010 | 1159 |
| YP_008051645.1 | NC_021306_p20 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 11940 | 12401 |
| YP_008051750.1 | NC_021306_p125 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 68330 | 68461 |
| YP_008051734.1 | NC_021306_p109 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 63077 | 63451 |
| YP_008051642.1 | NC_021306_p17 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 9881 | 10285 |
| YP_008051697.1 | NC_021306_p72 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 46336 | 46704 |
| YP_008051638.1 | NC_021306_p13 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 8431 | 8610 |
| YP_008051662.1 | NC_021306_p37 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 32602 | 32847 |
| YP_008051658.1 | NC_021306_p33 | holin | phrog_526 | holin | lysis | 1 | 30614 | 30997 |
| YP_008051753.1 | NC_021306_p128 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 69245 | 69634 |
| YP_008051692.1 | NC_021306_p67 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43472 | 44440 |
| YP_008051747.1 | NC_021306_p122 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 67820 | 68020 |
| YP_008051766.1 | NC_021306_p141 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 73539 | 73790 |
| YP_008051707.1 | NC_021306_p82 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50665 | 50853 |
| YP_008051704.1 | NC_021306_p79 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 48431 | 49081 |
| YP_008051626.1 | NC_021306_p1 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 267 | 560 |
| YP_008051632.1 | NC_021306_p7 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1924 | 2232 |
| YP_008051718.1 | NC_021306_p93 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 56054 | 56314 |
| YP_008051690.1 | NC_021306_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42844 | 42999 |
| YP_008051708.1 | NC_021306_p83 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 50850 | 51110 |
| YP_008051684.1 | NC_021306_p59 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 41127 | 41273 |
| YP_008051735.1 | NC_021306_p110 | hypothetical protein | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | 1 | 63454 | 63933 |
| YP_008051741.1 | NC_021306_p116 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 66225 | 66566 |
| YP_008051765.1 | NC_021306_p140 | hypothetical protein | phrog_14103 | unknown function | unknown function | -1 | 73343 | 73528 |
| YP_008051706.1 | NC_021306_p81 | DnaB-like helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 49406 | 50668 |
| YP_008051676.1 | NC_021306_p51 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 36736 | 37038 |
| YP_008051739.1 | NC_021306_p114 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 65935 | 66072 |
| YP_008051769.1 | NC_021306_p144 | hypothetical protein | phrog_5130 | unknown function | unknown function | -1 | 74266 | 74457 |
| YP_008051654.1 | NC_021306_p29 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28017 | 28445 |
| YP_008051728.1 | NC_021306_p103 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 61179 | 61469 |
| YP_008051705.1 | NC_021306_p80 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 49063 | 49413 |
| YP_008051715.1 | NC_021306_p90 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 53767 | 53877 |
| YP_008051648.1 | NC_021306_p23 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 17564 | 19225 |
| YP_008051717.1 | NC_021306_p92 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 55236 | 56057 |
| YP_008051748.1 | NC_021306_p123 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 68017 | 68154 |
| YP_008051663.1 | NC_021306_p38 | hypothetical protein | phrog_9947 | Lsr2-like DNA bridging protein | DNA, RNA and nucleotide metabolism | -1 | 33084 | 33263 |
| YP_008051746.1 | NC_021306_p121 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 67669 | 67836 |
| YP_008051709.1 | NC_021306_p84 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 51085 | 51306 |
| YP_008051651.1 | NC_021306_p26 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 21751 | 24147 |
| YP_008051683.1 | NC_021306_p58 | pentapepetide repeat family protein | phrog_923 | unknown function | unknown function | 1 | 40280 | 41125 |
| YP_008051699.1 | NC_021306_p74 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 47075 | 47248 |
| YP_008051641.1 | NC_021306_p16 | hypothetical protein | phrog_2805 | minor tail protein | tail | 1 | 9523 | 9903 |
| YP_008051730.1 | NC_021306_p105 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61838 | 62128 |
| YP_008051713.1 | NC_021306_p88 | Pnk | phrog_505 | polynucleotide kinase | other | 1 | 52369 | 53307 |
| YP_008051745.1 | NC_021306_p120 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 67211 | 67672 |
| YP_008051729.1 | NC_021306_p104 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 61474 | 61785 |
| YP_008051637.1 | NC_021306_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 6815 | 8308 |
| YP_008051758.1 | NC_021306_p133 | hypothetical protein | phrog_4547 | unknown function | unknown function | -1 | 71199 | 71516 |
| YP_008051650.1 | NC_021306_p25 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 20901 | 21734 |
| YP_008051725.1 | NC_021306_p100 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59489 | 59929 |
| YP_008051664.1 | NC_021306_p39 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 33266 | 33652 |
| YP_008051752.1 | NC_021306_p127 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 68985 | 69248 |
| YP_008051711.1 | NC_021306_p86 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 51661 | 52023 |
| YP_008051719.1 | NC_021306_p94 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 56331 | 56489 |
| YP_008051669.1 | NC_021306_p44 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 34830 | 35105 |
| YP_008051721.1 | NC_021306_p96 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 56942 | 57385 |
| YP_008051696.1 | NC_021306_p71 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 45866 | 46336 |
| YP_008051763.1 | NC_021306_p138 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 72856 | 73029 |
| YP_008051723.1 | NC_021306_p98 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 57719 | 58261 |
| YP_008051673.1 | NC_021306_p48 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 35668 | 35883 |
| YP_008051772.1 | NC_021306_p147 | HNH endonuclease domain protein | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 75155 | 75502 |
| YP_008051655.1 | NC_021306_p30 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28432 | 28617 |
| YP_008051657.1 | NC_021306_p32 | lysin A | phrog_317 | endolysin | lysis | 1 | 29108 | 30610 |
| YP_008051767.1 | NC_021306_p142 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 73796 | 73993 |
| YP_008051727.1 | NC_021306_p102 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 60822 | 61178 |
| YP_008051671.1 | NC_021306_p46 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 35275 | 35442 |
| YP_008051667.1 | NC_021306_p42 | hypothetical protein | phrog_3472 | unknown function | unknown function | -1 | 34400 | 34654 |
| YP_008051680.1 | NC_021306_p55 | immunity repressor | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 39394 | 39825 |
| YP_008051675.1 | NC_021306_p50 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 36048 | 36449 |
| YP_008051771.1 | NC_021306_p146 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 74944 | 75165 |
| YP_008051701.1 | NC_021306_p76 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 47481 | 47894 |
| YP_008051770.1 | NC_021306_p145 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 74522 | 74869 |
| YP_008051751.1 | NC_021306_p126 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 68445 | 68606 |
| YP_008051649.1 | NC_021306_p24 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19297 | 20892 |
| YP_008051710.1 | NC_021306_p85 | hypothetical protein | phrog_3836 | unknown function | unknown function | 1 | 51299 | 51664 |
| YP_008051646.1 | NC_021306_p21 | tail assembly chaperone | phrog_5940 | tail assembly chaperone | tail | 1 | 12533 | 12811 |
| YP_008051736.1 | NC_021306_p111 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 63944 | 64729 |
| YP_008051627.1 | NC_021306_p2 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 557 | 742 |
| YP_008051698.1 | NC_021306_p73 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 46707 | 47075 |
| YP_008051761.1 | NC_021306_p136 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 71889 | 72464 |
| YP_008051672.1 | NC_021306_p47 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 35439 | 35609 |
| YP_008051688.1 | NC_021306_p63 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 42531 | 42764 |
| YP_008051666.1 | NC_021306_p41 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 33894 | 34403 |
| YP_008051731.1 | NC_021306_p106 | hypothetical protein | phrog_19288 | unknown function | unknown function | 1 | 62139 | 62252 |
| YP_008051712.1 | NC_021306_p87 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 52020 | 52214 |
| YP_008051720.1 | NC_021306_p95 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 56486 | 56938 |
| YP_008051678.1 | NC_021306_p53 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 38309 | 38548 |
| YP_008051737.1 | NC_021306_p112 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 64726 | 64968 |
| YP_008051716.1 | NC_021306_p91 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 53874 | 55199 |
| YP_008051635.1 | NC_021306_p10 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4167 | 5723 |
| YP_008051643.1 | NC_021306_p18 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 10312 | 11286 |
| YP_008051652.1 | NC_021306_p27 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24144 | 26984 |
| YP_008051743.1 | NC_021306_p118 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 66791 | 67027 |
| YP_008051764.1 | NC_021306_p139 | hypothetical protein | phrog_36359 | unknown function | unknown function | -1 | 73034 | 73330 |
| YP_008051732.1 | NC_021306_p107 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 62582 | 62806 |
| YP_008051644.1 | NC_021306_p19 | hypothetical protein | phrog_5711 | head fiber protein | head and packaging | 1 | 11346 | 11819 |
| YP_008051668.1 | NC_021306_p43 | hypothetical protein | phrog_5831 | unknown function | unknown function | -1 | 34651 | 34833 |
| YP_008051640.1 | NC_021306_p15 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 9191 | 9526 |