Genomic map of Mycobacterium phage Dumbo (NC_021306)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021306
Definition
Mycobacterium phage Dumbo, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus.
DB of origin
REFSEQ
Length
75736
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
147
%GC
62.99
Number of singletons
1
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008051738.1 NC_021306_p113 RecA phrog_97 UvsX-like recombinase other 1 64976 65938
YP_008051653.1 NC_021306_p28 hypothetical protein phrog_553 minor tail protein tail 1 26985 27947
YP_008051691.1 NC_021306_p66 hypothetical protein phrog_762 unknown function unknown function 1 43074 43475
YP_008051674.1 NC_021306_p49 hypothetical protein phrog_2815 unknown function unknown function -1 35902 36048
YP_008051700.1 NC_021306_p75 hypothetical protein phrog_2793 unknown function unknown function 1 47251 47484
YP_008051733.1 NC_021306_p108 hypothetical protein phrog_1042 unknown function unknown function 1 62803 63066
YP_008051759.1 NC_021306_p134 hypothetical protein phrog_3730 unknown function unknown function -1 71522 71647
YP_008051760.1 NC_021306_p135 hypothetical protein phrog_2287 unknown function unknown function -1 71637 71873
YP_008051689.1 NC_021306_p64 hypothetical protein phrog_2221 unknown function unknown function 1 42764 42925
YP_008051754.1 NC_021306_p129 hypothetical protein phrog_2942 unknown function unknown function -1 69752 70033
YP_008051661.1 NC_021306_p36 hypothetical protein phrog_726 unknown function unknown function 1 32179 32595
YP_008051686.1 NC_021306_p61 hypothetical protein phrog_2744 unknown function unknown function 1 42092 42397
YP_008051714.1 NC_021306_p89 hypothetical protein phrog_2495 unknown function unknown function 1 53414 53782
YP_008051677.1 NC_021306_p52 integrase (Y-int) phrog_1 integrase integration and excision 1 37289 38170
YP_008051749.1 NC_021306_p124 hypothetical protein phrog_2925 unknown function unknown function 1 68151 68330
YP_008051639.1 NC_021306_p14 hypothetical protein phrog_442 head-tail adaptor connector 1 8610 9176
YP_008051757.1 NC_021306_p132 hypothetical protein phrog_1587 unknown function unknown function -1 70868 71215
YP_008051742.1 NC_021306_p117 hypothetical protein phrog_23135 unknown function unknown function 1 66559 66831
YP_008051631.1 NC_021306_p6 hypothetical protein phrog_4101 unknown function unknown function -1 1685 1924
YP_008051628.1 NC_021306_p3 hypothetical protein phrog_3858 unknown function unknown function 1 739 1032
YP_008051679.1 NC_021306_p54 hypothetical protein phrog_950 unknown function unknown function -1 38526 39299
YP_008051687.1 NC_021306_p62 hypothetical protein phrog_3463 unknown function unknown function 1 42416 42523
YP_008051762.1 NC_021306_p137 hypothetical protein phrog_3174 unknown function unknown function -1 72468 72851
YP_008051756.1 NC_021306_p131 hypothetical protein phrog_1915 unknown function unknown function -1 70395 70853
YP_008051670.1 NC_021306_p45 hypothetical protein phrog_1155 unknown function unknown function -1 35102 35275
YP_008051740.1 NC_021306_p115 hypothetical protein phrog_2755 unknown function unknown function 1 66059 66232
YP_008051656.1 NC_021306_p31 hypothetical protein phrog_411 unknown function unknown function 1 28750 29034
YP_008051634.1 NC_021306_p9 hypothetical protein phrog_2845 unknown function unknown function 1 3959 4180
YP_008051724.1 NC_021306_p99 DNA methylase phrog_67 DNA methyltransferase other 1 58258 59496
YP_008051630.1 NC_021306_p5 terminase small subunit phrog_83 terminase small subunit head and packaging 1 1152 1613
YP_008051636.1 NC_021306_p11 capsid maturation protease phrog_2753 head maturation protease head and packaging 1 5726 6727
YP_008051660.1 NC_021306_p35 lysin B phrog_102 endolysin lysis 1 31325 32182
YP_008051722.1 NC_021306_p97 hypothetical protein phrog_2788 unknown function unknown function 1 57387 57722
YP_008051682.1 NC_021306_p57 hypothetical protein phrog_2852 unknown function unknown function 1 40146 40283
YP_008051755.1 NC_021306_p130 hypothetical protein phrog_3034 unknown function unknown function -1 70030 70398
YP_008051768.1 NC_021306_p143 hypothetical protein phrog_5970 unknown function unknown function -1 74021 74269
YP_008051647.1 NC_021306_p22 tapemeasure phrog_2723 tail length tape measure protein tail 1 12804 17534
YP_008051726.1 NC_021306_p101 Clp protease phrog_94 head maturation protease head and packaging 1 60019 60825
YP_008051744.1 NC_021306_p119 hypothetical protein phrog_3062 unknown function unknown function 1 67008 67262
YP_008051702.1 NC_021306_p77 HNH endonuclease domain protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 47891 48208
YP_008051703.1 NC_021306_p78 hypothetical protein phrog_1673 unknown function unknown function 1 48198 48434
YP_008051633.1 NC_021306_p8 terminase large subunit phrog_9 terminase large subunit head and packaging 1 2277 3947
YP_008051693.1 NC_021306_p68 hypothetical protein phrog_572 unknown function unknown function 1 44437 44847
YP_008051685.1 NC_021306_p60 hypothetical protein phrog_2800 unknown function unknown function 1 41270 41548
YP_008051659.1 NC_021306_p34 hypothetical protein phrog_2424 unknown function unknown function 1 30990 31328
YP_008051681.1 NC_021306_p56 hypothetical protein phrog_3071 unknown function unknown function 1 40051 40149
YP_008051665.1 NC_021306_p40 hypothetical protein phrog_3481 unknown function unknown function -1 33700 33891
YP_008051695.1 NC_021306_p70 hypothetical protein phrog_2750 unknown function unknown function 1 45555 45866
YP_008051694.1 NC_021306_p69 Erf protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 44840 45562
YP_008051629.1 NC_021306_p4 hypothetical protein phrog_8426 unknown function unknown function 1 1010 1159
YP_008051645.1 NC_021306_p20 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 11940 12401
YP_008051750.1 NC_021306_p125 hypothetical protein phrog_2897 unknown function unknown function 1 68330 68461
YP_008051734.1 NC_021306_p109 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 63077 63451
YP_008051642.1 NC_021306_p17 hypothetical protein phrog_813 head-tail adaptor connector 1 9881 10285
YP_008051697.1 NC_021306_p72 hypothetical protein phrog_1389 unknown function unknown function 1 46336 46704
YP_008051638.1 NC_021306_p13 hypothetical protein phrog_2796 head-tail connector protein connector 1 8431 8610
YP_008051662.1 NC_021306_p37 NrdH-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 32602 32847
YP_008051658.1 NC_021306_p33 holin phrog_526 holin lysis 1 30614 30997
YP_008051753.1 NC_021306_p128 hypothetical protein phrog_2579 ParB C-terminal domain DNA, RNA and nucleotide metabolism -1 69245 69634
YP_008051692.1 NC_021306_p67 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 43472 44440
YP_008051747.1 NC_021306_p122 hypothetical protein phrog_2823 unknown function unknown function 1 67820 68020
YP_008051766.1 NC_021306_p141 hypothetical protein phrog_2772 unknown function unknown function -1 73539 73790
YP_008051707.1 NC_021306_p82 hypothetical protein phrog_1091 unknown function unknown function 1 50665 50853
YP_008051704.1 NC_021306_p79 hypothetical protein phrog_1882 unknown function unknown function 1 48431 49081
YP_008051626.1 NC_021306_p1 hypothetical protein phrog_2829 unknown function unknown function 1 267 560
YP_008051632.1 NC_021306_p7 hypothetical protein phrog_2202 unknown function unknown function -1 1924 2232
YP_008051718.1 NC_021306_p93 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 56054 56314
YP_008051690.1 NC_021306_p65 hypothetical protein singleton unknown function unknown function 1 42844 42999
YP_008051708.1 NC_021306_p83 hypothetical protein phrog_1821 transcriptional regulator WhiB-like transcription regulation 1 50850 51110
YP_008051684.1 NC_021306_p59 hypothetical protein phrog_2463 unknown function unknown function 1 41127 41273
YP_008051735.1 NC_021306_p110 hypothetical protein phrog_2252 endolysin; inhibits RNA polymerase lysis 1 63454 63933
YP_008051741.1 NC_021306_p116 hypothetical protein phrog_3167 unknown function unknown function 1 66225 66566
YP_008051765.1 NC_021306_p140 hypothetical protein phrog_14103 unknown function unknown function -1 73343 73528
YP_008051706.1 NC_021306_p81 DnaB-like helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 49406 50668
YP_008051676.1 NC_021306_p51 hypothetical protein phrog_2847 unknown function unknown function -1 36736 37038
YP_008051739.1 NC_021306_p114 hypothetical protein phrog_2965 unknown function unknown function 1 65935 66072
YP_008051769.1 NC_021306_p144 hypothetical protein phrog_5130 unknown function unknown function -1 74266 74457
YP_008051654.1 NC_021306_p29 hypothetical protein phrog_644 unknown function unknown function 1 28017 28445
YP_008051728.1 NC_021306_p103 hypothetical protein phrog_2757 unknown function unknown function 1 61179 61469
YP_008051705.1 NC_021306_p80 hypothetical protein phrog_572 unknown function unknown function 1 49063 49413
YP_008051715.1 NC_021306_p90 hypothetical protein phrog_2844 unknown function unknown function 1 53767 53877
YP_008051648.1 NC_021306_p23 minor tail protein phrog_106 minor tail protein tail 1 17564 19225
YP_008051717.1 NC_021306_p92 hypothetical protein phrog_1590 unknown function unknown function 1 55236 56057
YP_008051748.1 NC_021306_p123 hypothetical protein phrog_2296 unknown function unknown function 1 68017 68154
YP_008051663.1 NC_021306_p38 hypothetical protein phrog_9947 Lsr2-like DNA bridging protein DNA, RNA and nucleotide metabolism -1 33084 33263
YP_008051746.1 NC_021306_p121 hypothetical protein phrog_2764 unknown function unknown function 1 67669 67836
YP_008051709.1 NC_021306_p84 hypothetical protein phrog_2747 unknown function unknown function 1 51085 51306
YP_008051651.1 NC_021306_p26 minor tail protein phrog_346 minor tail protein tail 1 21751 24147
YP_008051683.1 NC_021306_p58 pentapepetide repeat family protein phrog_923 unknown function unknown function 1 40280 41125
YP_008051699.1 NC_021306_p74 hypothetical protein phrog_1622 unknown function unknown function 1 47075 47248
YP_008051641.1 NC_021306_p16 hypothetical protein phrog_2805 minor tail protein tail 1 9523 9903
YP_008051730.1 NC_021306_p105 hypothetical protein phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 61838 62128
YP_008051713.1 NC_021306_p88 Pnk phrog_505 polynucleotide kinase other 1 52369 53307
YP_008051745.1 NC_021306_p120 hypothetical protein phrog_2174 unknown function unknown function 1 67211 67672
YP_008051729.1 NC_021306_p104 hypothetical protein phrog_1969 unknown function unknown function 1 61474 61785
YP_008051637.1 NC_021306_p12 major capsid protein phrog_10 major head protein head and packaging 1 6815 8308
YP_008051758.1 NC_021306_p133 hypothetical protein phrog_4547 unknown function unknown function -1 71199 71516
YP_008051650.1 NC_021306_p25 minor tail protein phrog_732 minor tail protein tail 1 20901 21734
YP_008051725.1 NC_021306_p100 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 59489 59929
YP_008051664.1 NC_021306_p39 Lsr2 phrog_1223 nucloid associated Lsr2-like DNA, RNA and nucleotide metabolism -1 33266 33652
YP_008051752.1 NC_021306_p127 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 68985 69248
YP_008051711.1 NC_021306_p86 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 51661 52023
YP_008051719.1 NC_021306_p94 hypothetical protein phrog_2853 unknown function unknown function 1 56331 56489
YP_008051669.1 NC_021306_p44 hypothetical protein phrog_722 unknown function unknown function -1 34830 35105
YP_008051721.1 NC_021306_p96 hypothetical protein phrog_889 unknown function unknown function 1 56942 57385
YP_008051696.1 NC_021306_p71 hypothetical protein phrog_2771 unknown function unknown function 1 45866 46336
YP_008051763.1 NC_021306_p138 hypothetical protein phrog_1438 unknown function unknown function -1 72856 73029
YP_008051723.1 NC_021306_p98 hypothetical protein phrog_1568 DNA binding protein DNA, RNA and nucleotide metabolism 1 57719 58261
YP_008051673.1 NC_021306_p48 hypothetical protein phrog_2702 unknown function unknown function -1 35668 35883
YP_008051772.1 NC_021306_p147 HNH endonuclease domain protein phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism 1 75155 75502
YP_008051655.1 NC_021306_p30 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 28432 28617
YP_008051657.1 NC_021306_p32 lysin A phrog_317 endolysin lysis 1 29108 30610
YP_008051767.1 NC_021306_p142 hypothetical protein phrog_2795 unknown function unknown function -1 73796 73993
YP_008051727.1 NC_021306_p102 hypothetical protein phrog_2785 unknown function unknown function 1 60822 61178
YP_008051671.1 NC_021306_p46 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 35275 35442
YP_008051667.1 NC_021306_p42 hypothetical protein phrog_3472 unknown function unknown function -1 34400 34654
YP_008051680.1 NC_021306_p55 immunity repressor phrog_2745 transcriptional repressor transcription regulation -1 39394 39825
YP_008051675.1 NC_021306_p50 hypothetical protein phrog_2759 unknown function unknown function -1 36048 36449
YP_008051771.1 NC_021306_p146 hypothetical protein phrog_2762 unknown function unknown function 1 74944 75165
YP_008051701.1 NC_021306_p76 hypothetical protein phrog_289 GTP-binding domain other 1 47481 47894
YP_008051770.1 NC_021306_p145 hypothetical protein phrog_2904 unknown function unknown function 1 74522 74869
YP_008051751.1 NC_021306_p126 hypothetical protein phrog_3016 unknown function unknown function 1 68445 68606
YP_008051649.1 NC_021306_p24 minor tail protein phrog_110 minor tail protein tail 1 19297 20892
YP_008051710.1 NC_021306_p85 hypothetical protein phrog_3836 unknown function unknown function 1 51299 51664
YP_008051646.1 NC_021306_p21 tail assembly chaperone phrog_5940 tail assembly chaperone tail 1 12533 12811
YP_008051736.1 NC_021306_p111 DnaQ-like exonuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 63944 64729
YP_008051627.1 NC_021306_p2 hypothetical protein phrog_2775 unknown function unknown function 1 557 742
YP_008051698.1 NC_021306_p73 hypothetical protein phrog_572 unknown function unknown function 1 46707 47075
YP_008051761.1 NC_021306_p136 hypothetical protein phrog_2883 unknown function unknown function -1 71889 72464
YP_008051672.1 NC_021306_p47 hypothetical protein phrog_2893 unknown function unknown function -1 35439 35609
YP_008051688.1 NC_021306_p63 hypothetical protein phrog_2147 unknown function unknown function 1 42531 42764
YP_008051666.1 NC_021306_p41 hypothetical protein phrog_647 unknown function unknown function -1 33894 34403
YP_008051731.1 NC_021306_p106 hypothetical protein phrog_19288 unknown function unknown function 1 62139 62252
YP_008051712.1 NC_021306_p87 hypothetical protein phrog_2894 unknown function unknown function 1 52020 52214
YP_008051720.1 NC_021306_p95 hypothetical protein phrog_889 unknown function unknown function 1 56486 56938
YP_008051678.1 NC_021306_p53 hypothetical protein phrog_2842 unknown function unknown function 1 38309 38548
YP_008051737.1 NC_021306_p112 hypothetical protein phrog_1941 unknown function unknown function 1 64726 64968
YP_008051716.1 NC_021306_p91 RNA ligase phrog_968 RNA ligase DNA, RNA and nucleotide metabolism 1 53874 55199
YP_008051635.1 NC_021306_p10 portal protein phrog_12 portal protein head and packaging 1 4167 5723
YP_008051643.1 NC_021306_p18 major tail subunit phrog_476 major tail protein tail 1 10312 11286
YP_008051652.1 NC_021306_p27 D-ala-D-ala carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 24144 26984
YP_008051743.1 NC_021306_p118 hypothetical protein phrog_2279 unknown function unknown function 1 66791 67027
YP_008051764.1 NC_021306_p139 hypothetical protein phrog_36359 unknown function unknown function -1 73034 73330
YP_008051732.1 NC_021306_p107 hypothetical protein phrog_2846 unknown function unknown function 1 62582 62806
YP_008051644.1 NC_021306_p19 hypothetical protein phrog_5711 head fiber protein head and packaging 1 11346 11819
YP_008051668.1 NC_021306_p43 hypothetical protein phrog_5831 unknown function unknown function -1 34651 34833
YP_008051640.1 NC_021306_p15 hypothetical protein phrog_1531 head closure connector 1 9191 9526