Genomic map of Mycobacterium phage HINdeR (NC_021308)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021308
Definition
Mycobacterium phage HINdeR, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
52617
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
84
%GC
62.83
Number of singletons
4
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008051886.1 NC_021308_p34 hypothetical protein phrog_2697 unknown function unknown function -1 29322 29552
YP_008051882.1 NC_021308_p30 minor tail protein phrog_726 unknown function unknown function 1 25427 25855
YP_008051872.1 NC_021308_p20 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 15065 15409
YP_008051898.1 NC_021308_p46 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 34212 36239
YP_008051867.1 NC_021308_p15 major capsid protein phrog_10 major head protein head and packaging 1 12923 13882
YP_008051860.1 NC_021308_p8 lysin A phrog_317 endolysin lysis 1 5403 6755
YP_008051903.1 NC_021308_p51 hypothetical protein phrog_5618 unknown function unknown function -1 38793 39074
YP_008051880.1 NC_021308_p28 minor tail protein phrog_352 minor tail protein tail 1 24539 25006
YP_008051871.1 NC_021308_p19 hypothetical protein phrog_320 head closure Hc1 connector 1 14680 15063
YP_008051890.1 NC_021308_p38 hypothetical protein phrog_383 unknown function unknown function -1 30262 30651
YP_008051894.1 NC_021308_p42 hypothetical protein phrog_18021 unknown function unknown function -1 32913 33116
YP_008051913.1 NC_021308_p61 hypothetical protein singleton unknown function unknown function -1 42737 42805
YP_008051879.1 NC_021308_p27 minor tail protein phrog_110 minor tail protein tail 1 22725 24527
YP_008051918.1 NC_021308_p66 hypothetical protein phrog_520 unknown function unknown function -1 44536 44898
YP_008051888.1 NC_021308_p36 hypothetical protein phrog_38286 unknown function unknown function -1 29944 30081
YP_008051928.1 NC_021308_p76 hypothetical protein phrog_5664 unknown function unknown function -1 48268 48648
YP_008051873.1 NC_021308_p21 hypothetical protein phrog_123 tail terminator connector 1 15418 15861
YP_008051892.1 NC_021308_p40 hypothetical protein phrog_7968 unknown function unknown function -1 30901 31050
YP_008051870.1 NC_021308_p18 hypothetical protein phrog_830 head-tail connector protein connector 1 14513 14683
YP_008051895.1 NC_021308_p43 hypothetical protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 33113 33388
YP_008051902.1 NC_021308_p50 hypothetical protein phrog_2387 nucleotide kinase other -1 38402 38800
YP_008051856.1 NC_021308_p4 hypothetical protein phrog_819 tail protein tail 1 1562 2314
YP_008051859.1 NC_021308_p7 hypothetical protein phrog_754 minor tail protein tail 1 4364 5329
YP_008051857.1 NC_021308_p5 structural protein phrog_382 minor tail protein with lysin activity tail 1 2340 3560
YP_008051866.1 NC_021308_p14 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 12384 12887
YP_008051906.1 NC_021308_p54 DNA methylase phrog_363 DNA methyltransferase other -1 39931 40614
YP_008051926.1 NC_021308_p74 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47791 48078
YP_008051896.1 NC_021308_p44 hypothetical protein singleton unknown function unknown function -1 33369 33644
YP_008051899.1 NC_021308_p47 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36236 37135
YP_008051908.1 NC_021308_p56 hypothetical protein singleton unknown function unknown function -1 41080 41151
YP_008051861.1 NC_021308_p9 holin phrog_526 holin lysis 1 6752 7165
YP_008051862.1 NC_021308_p10 lysin B phrog_102 endolysin lysis 1 7162 8142
YP_008051920.1 NC_021308_p68 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 45206 46021
YP_008051889.1 NC_021308_p37 hypothetical protein phrog_2046 unknown function unknown function -1 30078 30215
YP_008051909.1 NC_021308_p57 esterase/lipase phrog_789 esterase/lipase other -1 41151 41972
YP_008051854.1 NC_021308_p2 hypothetical protein phrog_226 minor tail protein tail 1 742 1173
YP_008051883.1 NC_021308_p31 hypothetical protein phrog_2683 minor tail protein tail 1 25869 27332
YP_008051910.1 NC_021308_p58 hypothetical protein phrog_289 GTP-binding domain other -1 41969 42418
YP_008051874.1 NC_021308_p22 major tail subunit phrog_117 major tail protein tail 1 15876 16463
YP_008051934.1 NC_021308_p82 hypothetical protein phrog_2246 unknown function unknown function -1 50361 50567
YP_008051875.1 NC_021308_p23 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16577 17367
YP_008051863.1 NC_021308_p11 terminase phrog_9 terminase large subunit head and packaging 1 8169 9863
YP_008051868.1 NC_021308_p16 hypothetical protein phrog_748 head-tail connector protein connector 1 13946 14134
YP_008051855.1 NC_021308_p3 tail protein phrog_1126 unknown function unknown function 1 1249 1572
YP_008051931.1 NC_021308_p79 hypothetical protein phrog_586 unknown function unknown function -1 49458 49892
YP_008051924.1 NC_021308_p72 hypothetical protein phrog_5371 unknown function unknown function -1 47197 47442
YP_008051893.1 NC_021308_p41 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 31064 32902
YP_008051905.1 NC_021308_p53 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39534 39941
YP_008051885.1 NC_021308_p33 integrase s-int phrog_95 integrase integration and excision -1 27708 29171
YP_008051865.1 NC_021308_p13 capsid maturation protease phrog_193 head maturation protease head and packaging 1 11314 12333
YP_008051853.1 NC_021308_p1 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 411 704
YP_008051912.1 NC_021308_p60 hypothetical protein phrog_33942 unknown function unknown function -1 42558 42740
YP_008051930.1 NC_021308_p78 hypothetical protein phrog_855 unknown function unknown function -1 49313 49444
YP_008051935.1 NC_021308_p83 hypothetical protein phrog_3842 unknown function unknown function -1 50665 51240
YP_008051929.1 NC_021308_p77 SprT-like protein phrog_1006 unknown function unknown function -1 48840 49316
YP_008051923.1 NC_021308_p71 hypothetical protein phrog_1173 unknown function unknown function -1 47041 47193
YP_008051915.1 NC_021308_p63 hypothetical protein phrog_2068 phosphoribosyl transferase other -1 43056 43646
YP_008051877.1 NC_021308_p25 tapemeasure phrog_305 tail length tape measure protein tail 1 17367 20738
YP_008051936.1 NC_021308_p84 hypothetical protein phrog_16818 unknown function unknown function -1 51293 51541
YP_008051922.1 NC_021308_p70 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 46296 46802
YP_008051876.1 NC_021308_p24 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16577 16939
YP_008051911.1 NC_021308_p59 hypothetical protein phrog_27222 unknown function unknown function -1 42418 42558
YP_008051901.1 NC_021308_p49 hypothetical protein phrog_1167 phosphofructokinase other -1 37899 38405
YP_008051864.1 NC_021308_p12 portal protein phrog_104 portal protein head and packaging 1 9860 11317
YP_008051891.1 NC_021308_p39 hypothetical protein phrog_2019 unknown function unknown function -1 30641 30904
YP_008051897.1 NC_021308_p45 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 33646 34149
YP_008051921.1 NC_021308_p69 hypothetical protein phrog_4421 unknown function unknown function -1 45993 46286
YP_008051917.1 NC_021308_p65 hypothetical protein singleton unknown function unknown function -1 44465 44539
YP_008051919.1 NC_021308_p67 hypothetical protein phrog_642 unknown function unknown function -1 44895 45176
YP_008051881.1 NC_021308_p29 minor tail protein phrog_1298 minor tail protein tail 1 25006 25437
YP_008051869.1 NC_021308_p17 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 14142 14516
YP_008051887.1 NC_021308_p35 deoxycytidylate deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 29549 29947
YP_008051858.1 NC_021308_p6 hypothetical protein phrog_819 tail protein tail 1 3588 4367
YP_008051925.1 NC_021308_p73 hypothetical protein phrog_1342 unknown function unknown function -1 47439 47777
YP_008051900.1 NC_021308_p48 hypothetical protein phrog_221 metallo-phosphoesterase other -1 37132 37902
YP_008051907.1 NC_021308_p55 endo VII protein phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 40607 41083
YP_008051916.1 NC_021308_p64 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 43668 44465
YP_008051932.1 NC_021308_p80 hypothetical protein phrog_15203 unknown function unknown function -1 49978 50091
YP_008051884.1 NC_021308_p32 hypothetical protein phrog_2235 minor tail protein tail 1 27335 27661
YP_008051933.1 NC_021308_p81 hypothetical protein phrog_828 unknown function unknown function -1 50110 50361
YP_008051914.1 NC_021308_p62 hypothetical protein phrog_397 unknown function unknown function -1 42802 43023
YP_008051878.1 NC_021308_p26 minor tail protein phrog_106 minor tail protein tail 1 20746 22728
YP_008051927.1 NC_021308_p75 hypothetical protein phrog_519 unknown function unknown function -1 48075 48260
YP_008051904.1 NC_021308_p52 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39071 39718