| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021309 |
Definition |
Mycobacterium phage Phrux, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
REFSEQ |
Length |
74711 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
141 |
%GC |
63.05 |
Number of singletons |
0 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008051951.1 | NC_021309_p15 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 9465 | 9800 |
| YP_008052052.1 | NC_021309_p116 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 66917 | 67117 |
| YP_008051979.1 | NC_021309_p43 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 34991 | 35164 |
| YP_008052049.1 | NC_021309_p113 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 66105 | 66359 |
| YP_008051957.1 | NC_021309_p21 | tail assembly chaperone | phrog_15493 | tail assembly chaperone | tail | 1 | 12618 | 13085 |
| YP_008052076.1 | NC_021309_p140 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 73919 | 74140 |
| YP_008052064.1 | NC_021309_p128 | hypothetical protein | phrog_4547 | unknown function | unknown function | -1 | 70341 | 70658 |
| YP_008051983.1 | NC_021309_p47 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 35791 | 35937 |
| YP_008051989.1 | NC_021309_p53 | immunity repressor | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 39277 | 39708 |
| YP_008052057.1 | NC_021309_p121 | hypothetical protein | phrog_6448 | unknown function | unknown function | 1 | 67705 | 67818 |
| YP_008051985.1 | NC_021309_p49 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 36619 | 36942 |
| YP_008052062.1 | NC_021309_p126 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 69537 | 69995 |
| YP_008052026.1 | NC_021309_p90 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 55367 | 56188 |
| YP_008052012.1 | NC_021309_p76 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 48610 | 49260 |
| YP_008051981.1 | NC_021309_p45 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 35328 | 35564 |
| YP_008052014.1 | NC_021309_p78 | DnaB-like helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 49582 | 50844 |
| YP_008052035.1 | NC_021309_p99 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 60509 | 60865 |
| YP_008052070.1 | NC_021309_p134 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 72341 | 72514 |
| YP_008052020.1 | NC_021309_p84 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 52157 | 52351 |
| YP_008052031.1 | NC_021309_p95 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 57421 | 57963 |
| YP_008052041.1 | NC_021309_p105 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 62764 | 63138 |
| YP_008051993.1 | NC_021309_p57 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 41010 | 41156 |
| YP_008051995.1 | NC_021309_p59 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 41975 | 42280 |
| YP_008051955.1 | NC_021309_p19 | hypothetical protein | phrog_5711 | head fiber protein | head and packaging | 1 | 11620 | 12093 |
| YP_008052073.1 | NC_021309_p137 | hypothetical protein | phrog_8479 | unknown function | unknown function | -1 | 72958 | 73158 |
| YP_008052000.1 | NC_021309_p64 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43651 | 44619 |
| YP_008052002.1 | NC_021309_p66 | Erf | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45019 | 45741 |
| YP_008052058.1 | NC_021309_p122 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 68082 | 68345 |
| YP_008051965.1 | NC_021309_p29 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28291 | 28719 |
| YP_008051971.1 | NC_021309_p35 | lysin B | phrog_102 | endolysin | lysis | 1 | 31599 | 32456 |
| YP_008051964.1 | NC_021309_p28 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 27259 | 28221 |
| YP_008051937.1 | NC_021309_p1 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 267 | 560 |
| YP_008052061.1 | NC_021309_p125 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 69172 | 69540 |
| YP_008051945.1 | NC_021309_p9 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 3942 | 4163 |
| YP_008052067.1 | NC_021309_p131 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 71031 | 71579 |
| YP_008052045.1 | NC_021309_p109 | hypothetical protein | phrog_97 | UvsX-like recombinase | other | 1 | 64663 | 65625 |
| YP_008051970.1 | NC_021309_p34 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31264 | 31602 |
| YP_008052011.1 | NC_021309_p75 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 48377 | 48613 |
| YP_008052010.1 | NC_021309_p74 | HNH endonuclease domain protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48070 | 48387 |
| YP_008051977.1 | NC_021309_p41 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 34168 | 34632 |
| YP_008051975.1 | NC_021309_p39 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 33540 | 33926 |
| YP_008051962.1 | NC_021309_p26 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 22025 | 24421 |
| YP_008052036.1 | NC_021309_p100 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 60866 | 61156 |
| YP_008052037.1 | NC_021309_p101 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 61161 | 61472 |
| YP_008052072.1 | NC_021309_p136 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 72751 | 72954 |
| YP_008052039.1 | NC_021309_p103 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 62197 | 62493 |
| YP_008052016.1 | NC_021309_p80 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 51026 | 51286 |
| YP_008052071.1 | NC_021309_p135 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 72518 | 72745 |
| YP_008052077.1 | NC_021309_p141 | HNH endonuclease domain protein | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 74130 | 74477 |
| YP_008052019.1 | NC_021309_p83 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 51798 | 52160 |
| YP_008052025.1 | NC_021309_p89 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 54005 | 55330 |
| YP_008052042.1 | NC_021309_p106 | hypothetical protein | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | 1 | 63141 | 63620 |
| YP_008052018.1 | NC_021309_p82 | hypothetical protein | phrog_9963 | unknown function | unknown function | 1 | 51475 | 51801 |
| YP_008051994.1 | NC_021309_p58 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 41153 | 41431 |
| YP_008051998.1 | NC_021309_p62 | hypothetical protein | phrog_16636 | secreted protein | other | 1 | 42852 | 43328 |
| YP_008051991.1 | NC_021309_p55 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 40029 | 40166 |
| YP_008051982.1 | NC_021309_p46 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 35557 | 35772 |
| YP_008051938.1 | NC_021309_p2 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 557 | 742 |
| YP_008051968.1 | NC_021309_p32 | lysin A | phrog_317 | endolysin | lysis | 1 | 29382 | 30884 |
| YP_008052033.1 | NC_021309_p97 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59176 | 59616 |
| YP_008052017.1 | NC_021309_p81 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 51261 | 51482 |
| YP_008052053.1 | NC_021309_p117 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 67114 | 67251 |
| YP_008052006.1 | NC_021309_p70 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 46880 | 47254 |
| YP_008052021.1 | NC_021309_p85 | Pnk | phrog_505 | polynucleotide kinase | other | 1 | 52506 | 53447 |
| YP_008051987.1 | NC_021309_p51 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 38192 | 38431 |
| YP_008052009.1 | NC_021309_p73 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 47660 | 48073 |
| YP_008051980.1 | NC_021309_p44 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 35164 | 35331 |
| YP_008051947.1 | NC_021309_p11 | capsid maturation protease | phrog_2753 | head maturation protease | head and packaging | 1 | 5709 | 7001 |
| YP_008051942.1 | NC_021309_p6 | hypothetical protein | phrog_4101 | unknown function | unknown function | -1 | 1668 | 1907 |
| YP_008051969.1 | NC_021309_p33 | holin | phrog_526 | holin | lysis | 1 | 30888 | 31271 |
| YP_008051996.1 | NC_021309_p60 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 42414 | 42713 |
| YP_008052069.1 | NC_021309_p133 | hypothetical protein | phrog_4496 | unknown function | unknown function | -1 | 71983 | 72336 |
| YP_008051943.1 | NC_021309_p7 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1907 | 2215 |
| YP_008052004.1 | NC_021309_p68 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 46045 | 46515 |
| YP_008052023.1 | NC_021309_p87 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 53641 | 53739 |
| YP_008052003.1 | NC_021309_p67 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 45734 | 46045 |
| YP_008052034.1 | NC_021309_p98 | clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 59706 | 60512 |
| YP_008051940.1 | NC_021309_p4 | hypothetical protein | phrog_8426 | unknown function | unknown function | 1 | 993 | 1142 |
| YP_008051973.1 | NC_021309_p37 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 32876 | 33121 |
| YP_008052013.1 | NC_021309_p77 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 49257 | 49589 |
| YP_008052051.1 | NC_021309_p115 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 66766 | 66933 |
| YP_008052022.1 | NC_021309_p86 | hypothetical protein | phrog_7164 | unknown function | unknown function | 1 | 53447 | 53644 |
| YP_008051939.1 | NC_021309_p3 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 739 | 996 |
| YP_008052015.1 | NC_021309_p79 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50841 | 51029 |
| YP_008051953.1 | NC_021309_p17 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 10155 | 10559 |
| YP_008052043.1 | NC_021309_p107 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 63631 | 64416 |
| YP_008052068.1 | NC_021309_p132 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 71583 | 71978 |
| YP_008052056.1 | NC_021309_p120 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 67542 | 67703 |
| YP_008051946.1 | NC_021309_p10 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4150 | 5706 |
| YP_008051948.1 | NC_021309_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7089 | 8582 |
| YP_008052054.1 | NC_021309_p118 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 67248 | 67427 |
| YP_008051944.1 | NC_021309_p8 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2260 | 3930 |
| YP_008052027.1 | NC_021309_p91 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 56185 | 56445 |
| YP_008051950.1 | NC_021309_p14 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 8884 | 9450 |
| YP_008052063.1 | NC_021309_p127 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 70010 | 70339 |
| YP_008051952.1 | NC_021309_p16 | hypothetical protein | phrog_2805 | minor tail protein | tail | 1 | 9797 | 10177 |
| YP_008052050.1 | NC_021309_p114 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 66356 | 66769 |
| YP_008052075.1 | NC_021309_p139 | hypothetical protein | phrog_8080 | unknown function | unknown function | -1 | 73593 | 73811 |
| YP_008052074.1 | NC_021309_p138 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 73187 | 73546 |
| YP_008051949.1 | NC_021309_p13 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 8705 | 8884 |
| YP_008052007.1 | NC_021309_p71 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 47254 | 47433 |
| YP_008051954.1 | NC_021309_p18 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 10586 | 11560 |
| YP_008052029.1 | NC_021309_p93 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 56617 | 57087 |
| YP_008052028.1 | NC_021309_p92 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 56462 | 56620 |
| YP_008051988.1 | NC_021309_p52 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 38409 | 39182 |
| YP_008051974.1 | NC_021309_p38 | hypothetical protein | phrog_9947 | Lsr2-like DNA bridging protein | DNA, RNA and nucleotide metabolism | -1 | 33358 | 33537 |
| YP_008052066.1 | NC_021309_p130 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 70779 | 71015 |
| YP_008052030.1 | NC_021309_p94 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 57089 | 57424 |
| YP_008052065.1 | NC_021309_p129 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 70664 | 70789 |
| YP_008051976.1 | NC_021309_p40 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 33974 | 34171 |
| YP_008052047.1 | NC_021309_p111 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 65746 | 65919 |
| YP_008051941.1 | NC_021309_p5 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 1135 | 1596 |
| YP_008051958.1 | NC_021309_p22 | tapemeasure | phrog_2723 | tail length tape measure protein | tail | 1 | 13078 | 17808 |
| YP_008051978.1 | NC_021309_p42 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 34629 | 34994 |
| YP_008051990.1 | NC_021309_p54 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 39934 | 40032 |
| YP_008051959.1 | NC_021309_p23 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 17838 | 19499 |
| YP_008052005.1 | NC_021309_p69 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 46515 | 46883 |
| YP_008051956.1 | NC_021309_p20 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 12142 | 12675 |
| YP_008052044.1 | NC_021309_p108 | RecA | phrog_1941 | unknown function | unknown function | 1 | 64413 | 64655 |
| YP_008051961.1 | NC_021309_p25 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 21175 | 22008 |
| YP_008051967.1 | NC_021309_p31 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29024 | 29308 |
| YP_008052055.1 | NC_021309_p119 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 67427 | 67558 |
| YP_008051999.1 | NC_021309_p63 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 43325 | 43654 |
| YP_008051960.1 | NC_021309_p24 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19487 | 21166 |
| YP_008052060.1 | NC_021309_p124 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 68850 | 69104 |
| YP_008051963.1 | NC_021309_p27 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24418 | 27258 |
| YP_008052008.1 | NC_021309_p72 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 47430 | 47663 |
| YP_008052001.1 | NC_021309_p65 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 44616 | 45026 |
| YP_008052046.1 | NC_021309_p110 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 65622 | 65759 |
| YP_008051972.1 | NC_021309_p36 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32453 | 32869 |
| YP_008051997.1 | NC_021309_p61 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 42646 | 42807 |
| YP_008051966.1 | NC_021309_p30 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28706 | 28891 |
| YP_008052040.1 | NC_021309_p104 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 62490 | 62753 |
| YP_008051992.1 | NC_021309_p56 | pentapeptide repeat family protein | phrog_923 | unknown function | unknown function | 1 | 40163 | 41008 |
| YP_008052059.1 | NC_021309_p123 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 68342 | 68731 |
| YP_008051984.1 | NC_021309_p48 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 35937 | 36332 |
| YP_008052032.1 | NC_021309_p96 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 57960 | 59183 |
| YP_008051986.1 | NC_021309_p50 | integrase (y-int) | phrog_1 | integrase | integration and excision | 1 | 37172 | 38053 |
| YP_008052038.1 | NC_021309_p102 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61525 | 61815 |
| YP_008052048.1 | NC_021309_p112 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 65912 | 66124 |
| YP_008052024.1 | NC_021309_p88 | hypothetical protein | phrog_10857 | unknown function | unknown function | 1 | 53736 | 54008 |