| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021311 |
Definition |
Mycobacterium phage Phaux, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
REFSEQ |
Length |
76479 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
145 |
%GC |
62.91 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008052255.1 | NC_021311_p81 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 50014 | 50664 |
| YP_008052232.1 | NC_021311_p58 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 41341 | 41436 |
| YP_008052285.1 | NC_021311_p111 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 64686 | 65060 |
| YP_008052289.1 | NC_021311_p115 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 66585 | 67547 |
| YP_008052178.1 | NC_021311_p4 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 776 | 1237 |
| YP_008052249.1 | NC_021311_p75 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 48284 | 48658 |
| YP_008052276.1 | NC_021311_p102 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 60900 | 61340 |
| YP_008052242.1 | NC_021311_p68 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 44732 | 45058 |
| YP_008052186.1 | NC_021311_p12 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 8995 | 9186 |
| YP_008052263.1 | NC_021311_p89 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 53603 | 53797 |
| YP_008052223.1 | NC_021311_p49 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 36735 | 36971 |
| YP_008052305.1 | NC_021311_p131 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 71094 | 71462 |
| YP_008052264.1 | NC_021311_p90 | Pnk | phrog_505 | polynucleotide kinase | other | 1 | 53952 | 54893 |
| YP_008052252.1 | NC_021311_p78 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 49064 | 49477 |
| YP_008052293.1 | NC_021311_p119 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 68027 | 68281 |
| YP_008052193.1 | NC_021311_p19 | tail assembly chaperone | phrog_5940 | tail assembly chaperone | tail | 1 | 12570 | 12851 |
| YP_008052275.1 | NC_021311_p101 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 59684 | 60907 |
| YP_008052284.1 | NC_021311_p110 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 64412 | 64675 |
| YP_008052209.1 | NC_021311_p35 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32738 | 33154 |
| YP_008052288.1 | NC_021311_p114 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 66335 | 66577 |
| YP_008052229.1 | NC_021311_p55 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 39599 | 39838 |
| YP_008052230.1 | NC_021311_p56 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 39816 | 40589 |
| YP_008052317.1 | NC_021311_p143 | hypothetical protein | phrog_8080 | unknown function | unknown function | -1 | 75367 | 75579 |
| YP_008052205.1 | NC_021311_p31 | lysin A | phrog_317 | endolysin | lysis | 1 | 29667 | 31169 |
| YP_008052218.1 | NC_021311_p44 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | -1 | 35589 | 36023 |
| YP_008052234.1 | NC_021311_p60 | pentapeptide repeat family protein | phrog_923 | unknown function | unknown function | 1 | 41570 | 42415 |
| YP_008052183.1 | NC_021311_p9 | capsid maturation protease | phrog_12 | portal protein | head and packaging | 1 | 4787 | 6343 |
| YP_008052254.1 | NC_021311_p80 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 49781 | 50017 |
| YP_008052213.1 | NC_021311_p39 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 34214 | 34678 |
| YP_008052307.1 | NC_021311_p133 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 71931 | 72260 |
| YP_008052181.1 | NC_021311_p7 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1904 | 4567 |
| YP_008052237.1 | NC_021311_p63 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 43382 | 43687 |
| YP_008052235.1 | NC_021311_p61 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 42417 | 42563 |
| YP_008052200.1 | NC_021311_p26 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24703 | 27543 |
| YP_008052198.1 | NC_021311_p24 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 21460 | 22293 |
| YP_008052283.1 | NC_021311_p109 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 64119 | 64415 |
| YP_008052261.1 | NC_021311_p87 | hypothetical protein | phrog_3836 | unknown function | unknown function | 1 | 52882 | 53247 |
| YP_008052240.1 | NC_021311_p66 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 44053 | 44214 |
| YP_008052303.1 | NC_021311_p129 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 70772 | 71026 |
| YP_008052202.1 | NC_021311_p28 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28576 | 29004 |
| YP_008052177.1 | NC_021311_p3 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 783 |
| YP_008052201.1 | NC_021311_p27 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 27544 | 28506 |
| YP_008052271.1 | NC_021311_p97 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 58186 | 58344 |
| YP_008052238.1 | NC_021311_p64 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 43706 | 43813 |
| YP_008052300.1 | NC_021311_p126 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 69464 | 69625 |
| YP_008052215.1 | NC_021311_p41 | hypothetical protein | phrog_5831 | unknown function | unknown function | -1 | 34926 | 35108 |
| YP_008052296.1 | NC_021311_p122 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 68839 | 69039 |
| YP_008052304.1 | NC_021311_p130 | hypothetical protein | phrog_8201 | unknown function | unknown function | -1 | 71023 | 71097 |
| YP_008052189.1 | NC_021311_p15 | hypothetical protein | phrog_2805 | minor tail protein | tail | 1 | 10097 | 10477 |
| YP_008052262.1 | NC_021311_p88 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 53244 | 53606 |
| YP_008052226.1 | NC_021311_p52 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 37344 | 37739 |
| YP_008052313.1 | NC_021311_p139 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 74134 | 74307 |
| YP_008052318.1 | NC_021311_p144 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 75687 | 75908 |
| YP_008052315.1 | NC_021311_p141 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 74546 | 74743 |
| YP_008052299.1 | NC_021311_p125 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 69349 | 69480 |
| YP_008052269.1 | NC_021311_p95 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 57091 | 57912 |
| YP_008052228.1 | NC_021311_p54 | integrase, (Y-int) | phrog_1 | integrase | integration and excision | 1 | 38579 | 39460 |
| YP_008052190.1 | NC_021311_p16 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 10455 | 10859 |
| YP_008052204.1 | NC_021311_p30 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29309 | 29593 |
| YP_008052292.1 | NC_021311_p118 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 67834 | 68046 |
| YP_008052256.1 | NC_021311_p82 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 50661 | 50996 |
| YP_008052225.1 | NC_021311_p51 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 37198 | 37344 |
| YP_008052279.1 | NC_021311_p105 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 62431 | 62787 |
| YP_008052210.1 | NC_021311_p36 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33161 | 33406 |
| YP_008052231.1 | NC_021311_p57 | immunity repressor | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 40684 | 41124 |
| YP_008052274.1 | NC_021311_p100 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59145 | 59687 |
| YP_008052191.1 | NC_021311_p17 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 10886 | 11857 |
| YP_008052248.1 | NC_021311_p74 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 47919 | 48287 |
| YP_008052259.1 | NC_021311_p85 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 52418 | 52693 |
| YP_008052258.1 | NC_021311_p84 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 52248 | 52436 |
| YP_008052220.1 | NC_021311_p46 | hypothetical protein | phrog_6127 | unknown function | unknown function | -1 | 36288 | 36401 |
| YP_008052301.1 | NC_021311_p127 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 70004 | 70267 |
| YP_008052243.1 | NC_021311_p69 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 45055 | 46023 |
| YP_008052253.1 | NC_021311_p79 | HNH endonuclease domain protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 49474 | 49791 |
| YP_008052291.1 | NC_021311_p117 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 67668 | 67841 |
| YP_008052196.1 | NC_021311_p22 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18123 | 19784 |
| YP_008052270.1 | NC_021311_p96 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 57909 | 58169 |
| YP_008052175.1 | NC_021311_p1 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| YP_008052295.1 | NC_021311_p121 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 68688 | 68855 |
| YP_008052251.1 | NC_021311_p77 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 48834 | 49067 |
| YP_008052216.1 | NC_021311_p42 | hypothetical protein | phrog_3447 | unknown function | unknown function | -1 | 35105 | 35317 |
| YP_008052221.1 | NC_021311_p47 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 36398 | 36571 |
| YP_008052247.1 | NC_021311_p73 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 47449 | 47919 |
| YP_008052298.1 | NC_021311_p124 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 69170 | 69349 |
| YP_008052265.1 | NC_021311_p91 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 55000 | 55368 |
| YP_008052290.1 | NC_021311_p116 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 67544 | 67681 |
| YP_008052316.1 | NC_021311_p142 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 74976 | 75323 |
| YP_008052236.1 | NC_021311_p62 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 42560 | 42838 |
| YP_008052310.1 | NC_021311_p136 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 72930 | 73166 |
| YP_008052188.1 | NC_021311_p14 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 9765 | 10100 |
| YP_008052208.1 | NC_021311_p34 | lysin B | phrog_102 | endolysin | lysis | 1 | 31884 | 32741 |
| YP_008052297.1 | NC_021311_p123 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 69036 | 69173 |
| YP_008052244.1 | NC_021311_p70 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 46020 | 46430 |
| YP_008052309.1 | NC_021311_p135 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 72815 | 72988 |
| YP_008052219.1 | NC_021311_p45 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 36020 | 36295 |
| YP_008052260.1 | NC_021311_p86 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 52668 | 52889 |
| YP_008052214.1 | NC_021311_p40 | hypothetical protein | phrog_3472 | unknown function | unknown function | -1 | 34675 | 34929 |
| YP_008052182.1 | NC_021311_p8 | portal protein | phrog_2845 | unknown function | unknown function | 1 | 4579 | 4800 |
| YP_008052281.1 | NC_021311_p107 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 63083 | 63394 |
| YP_008052180.1 | NC_021311_p6 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1551 | 1859 |
| YP_008052217.1 | NC_021311_p43 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 35314 | 35592 |
| YP_008052227.1 | NC_021311_p53 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 38026 | 38328 |
| YP_008052311.1 | NC_021311_p137 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 73182 | 73730 |
| YP_008052319.1 | NC_021311_p145 | HNH endonuclease domain protein | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 75898 | 76245 |
| YP_008052306.1 | NC_021311_p132 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 71459 | 71917 |
| YP_008052273.1 | NC_021311_p99 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 58813 | 59148 |
| YP_008052185.1 | NC_021311_p11 | hypothetical protein | phrog_10 | major head protein | head and packaging | 1 | 7435 | 8928 |
| YP_008052268.1 | NC_021311_p94 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 55729 | 57054 |
| YP_008052195.1 | NC_021311_p21 | tapemeasure | phrog_2723 | tail length tape measure protein | tail | 1 | 13357 | 18093 |
| YP_008052207.1 | NC_021311_p33 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31549 | 31887 |
| YP_008052222.1 | NC_021311_p48 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36571 | 36738 |
| YP_008052203.1 | NC_021311_p29 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28991 | 29176 |
| YP_008052187.1 | NC_021311_p13 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 9186 | 9752 |
| YP_008052308.1 | NC_021311_p134 | hypothetical protein | phrog_4006 | unknown function | unknown function | -1 | 72265 | 72789 |
| YP_008052241.1 | NC_021311_p67 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 44403 | 44735 |
| YP_008052272.1 | NC_021311_p98 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 58341 | 58811 |
| YP_008052314.1 | NC_021311_p140 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 74304 | 74540 |
| YP_008052211.1 | NC_021311_p37 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 33586 | 33972 |
| YP_008052245.1 | NC_021311_p71 | Erf protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 46423 | 47145 |
| YP_008052294.1 | NC_021311_p120 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 68230 | 68691 |
| YP_008052257.1 | NC_021311_p83 | DnaB-like helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 50989 | 52251 |
| YP_008052312.1 | NC_021311_p138 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 73734 | 74129 |
| YP_008052184.1 | NC_021311_p10 | major capsid protein | phrog_2753 | head maturation protease | head and packaging | 1 | 6346 | 7347 |
| YP_008052250.1 | NC_021311_p76 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 48658 | 48837 |
| YP_008052282.1 | NC_021311_p108 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 63447 | 63737 |
| YP_008052212.1 | NC_021311_p38 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 34020 | 34217 |
| YP_008052280.1 | NC_021311_p106 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 62788 | 63078 |
| YP_008052277.1 | NC_021311_p103 | Clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 61375 | 62235 |
| YP_008052302.1 | NC_021311_p128 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 70264 | 70653 |
| YP_008052197.1 | NC_021311_p23 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19772 | 21451 |
| YP_008052246.1 | NC_021311_p72 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 47138 | 47449 |
| YP_008052233.1 | NC_021311_p59 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 41436 | 41573 |
| YP_008052199.1 | NC_021311_p25 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 22310 | 24706 |
| YP_008052194.1 | NC_021311_p20 | HNH endonuclease domain protein | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 12841 | 13356 |
| YP_008052192.1 | NC_021311_p18 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 11977 | 12438 |
| YP_008052179.1 | NC_021311_p5 | hypothetical protein | phrog_4101 | unknown function | unknown function | -1 | 1309 | 1551 |
| YP_008052267.1 | NC_021311_p93 | hypothetical protein | phrog_10857 | unknown function | unknown function | 1 | 55460 | 55732 |
| YP_008052206.1 | NC_021311_p32 | holin | phrog_526 | holin | lysis | 1 | 31173 | 31556 |
| YP_008052278.1 | NC_021311_p104 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 62237 | 62434 |
| YP_008052239.1 | NC_021311_p65 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 43821 | 44120 |
| YP_008052286.1 | NC_021311_p112 | hypothetical protein | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | 1 | 65063 | 65542 |
| YP_008052266.1 | NC_021311_p92 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 55341 | 55463 |
| YP_008052287.1 | NC_021311_p113 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 65553 | 66338 |
| YP_008052224.1 | NC_021311_p50 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 36964 | 37179 |
| YP_008052176.1 | NC_021311_p2 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |