Genomic map of Staphylococcus phage StauST398-2 (NC_021323)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021323
Definition
Staphylococcus phage StauST398-2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Triavirus; unclassified Triavirus.
DB of origin
REFSEQ
Length
45572
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
33.34
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008058782.1 NC_021323_p18 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 9122 11074
YP_008058814.1 NC_021323_p50 phage tail tape measure protein-like protein phrog_33 distal tail protein Dit tail 1 34321 35145
YP_008058768.1 NC_021323_p4 hypothetical protein phrog_6563 unknown function unknown function -1 2401 2742
YP_008058823.1 NC_021323_p59 hypothetical protein phrog_635 endolysin lysis 1 41864 43309
YP_008058808.1 NC_021323_p44 major tail protein phrog_88 major tail protein tail 1 26311 26952
YP_008058790.1 NC_021323_p26 hypothetical protein phrog_301 secreted protein other 1 13290 13685
YP_008058813.1 NC_021323_p49 tail length tape measure protein phrog_167 tail length tape measure protein tail 1 28121 34321
YP_008058826.1 NC_021323_p62 hypothetical protein phrog_1936 MazF-like growth inhibitor moron, auxiliary metabolic gene and host takeover 1 44913 45329
YP_008058788.1 NC_021323_p24 hypothetical protein phrog_467 unknown function unknown function 1 12398 12799
YP_008058780.1 NC_021323_p16 phi APSE P51-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 7306 8472
YP_008058809.1 NC_021323_p45 hypothetical protein phrog_25915 unknown function unknown function -1 26941 27030
YP_008058789.1 NC_021323_p25 sensor protein phrog_98 unknown function unknown function 1 12799 13143
YP_008058800.1 NC_021323_p36 terminase large subunit phrog_9 terminase large subunit head and packaging 1 19925 21616
YP_008058769.1 NC_021323_p5 phage exonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 2748 3680
YP_008058786.1 NC_021323_p22 hypothetical protein phrog_258 virulence associated other 1 11933 12175
YP_008058792.1 NC_021323_p28 hypothetical protein phrog_4426 unknown function unknown function 1 13971 14102
YP_008058781.1 NC_021323_p17 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 8499 9053
YP_008058766.1 NC_021323_p2 phi PVL-like protein phrog_716 Na/K ATPase other 1 1440 2054
YP_008058803.1 NC_021323_p39 capsid protein phrog_10 major head protein head and packaging 1 23583 24791
YP_008058811.1 NC_021323_p47 hypothetical protein phrog_187 head-tail adaptor connector 1 27557 27907
YP_008058783.1 NC_021323_p19 hypothetical protein phrog_299 unknown function unknown function 1 11087 11272
YP_008058815.1 NC_021323_p51 hypothetical protein phrog_326 tail protein with endopeptidase domain other 1 35154 36737
YP_008058805.1 NC_021323_p41 hypothetical protein phrog_25 head closure Hc1 connector 1 25150 25482
YP_008058795.1 NC_021323_p31 phi related protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 16942 17232
YP_008058770.1 NC_021323_p6 phage cI-like repressor phrog_4 transcriptional repressor transcription regulation -1 3696 4409
YP_008058798.1 NC_021323_p34 hypothetical protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 19187 19501
YP_008058812.1 NC_021323_p48 hypothetical protein phrog_567 unknown function unknown function 1 27949 28107
YP_008058791.1 NC_021323_p27 phi PVL-like protein phrog_152 RinB-like transcriptional activator transcription regulation 1 13682 13834
YP_008058778.1 NC_021323_p14 hypothetical protein phrog_633 transcriptional regulator transcription regulation 1 6609 6932
YP_008058816.1 NC_021323_p52 hypothetical protein phrog_574 unknown function unknown function 1 36737 37027
YP_008058797.1 NC_021323_p33 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 18593 19030
YP_008058822.1 NC_021323_p58 hypothetical protein phrog_962 holin lysis 1 41446 41883
YP_008058804.1 NC_021323_p40 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 24860 25138
YP_008058777.1 NC_021323_p13 phi PVL-like protein phrog_24915 unknown function unknown function 1 6435 6530
YP_008058794.1 NC_021323_p30 hypothetical protein phrog_19637 unknown function unknown function -1 16710 16799
YP_008058824.1 NC_021323_p60 hypothetical protein phrog_6339 unknown function unknown function 1 44213 44392
YP_008058801.1 NC_021323_p37 portal protein phrog_12 portal protein head and packaging 1 21834 22859
YP_008058784.1 NC_021323_p20 DNA-binding protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 11269 11673
YP_008058825.1 NC_021323_p61 hypothetical protein phrog_1281 unknown function unknown function 1 44396 44941
YP_008058775.1 NC_021323_p11 hypothetical protein phrog_640 unknown function unknown function 1 5841 6068
YP_008058765.1 NC_021323_p1 integrase phrog_1 integrase integration and excision -1 109 1314
YP_008058807.1 NC_021323_p43 hypothetical protein phrog_78 tail terminator connector 1 25881 26276
YP_008058787.1 NC_021323_p23 hypothetical protein phrog_1241 unknown function unknown function 1 12189 12395
YP_008058785.1 NC_021323_p21 hypothetical protein phrog_236 nucleotide kinase other 1 11703 11927
YP_008058793.1 NC_021323_p29 virulence-associated protein E phrog_256 DNA helicase DNA, RNA and nucleotide metabolism 1 14154 16601
YP_008058810.1 NC_021323_p46 major tail protein phrog_341 major tail protein tail 1 27044 27499
YP_008058779.1 NC_021323_p15 hypothetical protein phrog_408 unknown function unknown function 1 6947 7309
YP_008058806.1 NC_021323_p42 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 25479 25880
YP_008058821.1 NC_021323_p57 hypothetical protein phrog_276 unknown function unknown function 1 41011 41310
YP_008058819.1 NC_021323_p55 hypothetical protein phrog_300 tail fiber protein tail 1 40419 40808
YP_008058771.1 NC_021323_p7 phage transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 4542 4805
YP_008058802.1 NC_021323_p38 protease phrog_94 head maturation protease head and packaging 1 22849 23616
YP_008058820.1 NC_021323_p56 hypothetical protein phrog_134 unknown function unknown function 1 40801 40965
YP_008058818.1 NC_021323_p54 hypothetical protein phrog_257 minor tail protein tail 1 38920 40419
YP_008058796.1 NC_021323_p32 phage helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 17222 18580
YP_008058817.1 NC_021323_p53 minor structural protein phrog_287 minor tail protein tail 1 37043 38953
YP_008058776.1 NC_021323_p12 DNA-binding protein phrog_534 DNA binding protein DNA, RNA and nucleotide metabolism 1 6093 6356
YP_008058774.1 NC_021323_p10 hypothetical protein phrog_750 unknown function unknown function -1 5433 5798
YP_008058773.1 NC_021323_p9 hypothetical protein phrog_2366 unknown function unknown function -1 4954 5163
YP_008058767.1 NC_021323_p3 hypothetical protein phrog_787 unknown function unknown function -1 2051 2176
YP_008058799.1 NC_021323_p35 terminase small subunit phrog_361 terminase small subunit head and packaging 1 19612 19935
YP_008058772.1 NC_021323_p8 hypothetical protein phrog_1263 unknown function unknown function 1 4821 4964