| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021324 |
Definition |
Mycobacterium phage CASbig, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53369 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
97 |
%GC |
63.61 |
Number of singletons |
16 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008058868.1 | NC_021324_p42 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 17269 | 18765 |
| YP_008058867.1 | NC_021324_p41 | hypothetical protein | phrog_1781 | unknown function | unknown function | 1 | 16699 | 16899 |
| YP_008058835.1 | NC_021324_p9 | hypothetical protein | phrog_4631 | unknown function | unknown function | 1 | 3853 | 4170 |
| YP_008058876.1 | NC_021324_p50 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 20816 | 21307 |
| YP_008058848.1 | NC_021324_p22 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 7644 | 8462 |
| YP_008058895.1 | NC_021324_p69 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | -1 | 33629 | 36007 |
| YP_008058919.1 | NC_021324_p93 | structural protein | phrog_553 | minor tail protein | tail | -1 | 49313 | 50014 |
| YP_008058908.1 | NC_021324_p82 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | -1 | 41756 | 42595 |
| YP_008058869.1 | NC_021324_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18490 | 18945 |
| YP_008058879.1 | NC_021324_p53 | hypothetical protein | phrog_411 | unknown function | unknown function | -1 | 23037 | 23333 |
| YP_008058912.1 | NC_021324_p86 | lysin B | phrog_102 | endolysin | lysis | -1 | 45841 | 46809 |
| YP_008058840.1 | NC_021324_p14 | hypothetical protein | phrog_1387 | unknown function | unknown function | 1 | 4934 | 5137 |
| YP_008058882.1 | NC_021324_p56 | hypothetical protein | phrog_644 | unknown function | unknown function | -1 | 24611 | 24931 |
| YP_008058843.1 | NC_021324_p17 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | 1 | 5699 | 5998 |
| YP_008058854.1 | NC_021324_p28 | hypothetical protein | phrog_26301 | unknown function | unknown function | 1 | 10769 | 10996 |
| YP_008058839.1 | NC_021324_p13 | hypothetical protein | phrog_1155 | unknown function | unknown function | 1 | 4627 | 4815 |
| YP_008058827.1 | NC_021324_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 392 | 583 |
| YP_008058890.1 | NC_021324_p64 | minor tail protein | phrog_110 | minor tail protein | tail | -1 | 29545 | 31347 |
| YP_008058922.1 | NC_021324_p96 | hypothetical protein | phrog_226 | minor tail protein | tail | -1 | 52000 | 52440 |
| YP_008058861.1 | NC_021324_p35 | hypothetical protein | phrog_1503 | unknown function | unknown function | 1 | 13706 | 13915 |
| YP_008058846.1 | NC_021324_p20 | hypothetical protein | phrog_36264 | unknown function | unknown function | 1 | 7410 | 7514 |
| YP_008058896.1 | NC_021324_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34119 | 35813 |
| YP_008058906.1 | NC_021324_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40771 | 41196 |
| YP_008058903.1 | NC_021324_p77 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | -1 | 39109 | 39558 |
| YP_008058901.1 | NC_021324_p75 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | -1 | 38352 | 38747 |
| YP_008058852.1 | NC_021324_p26 | hypothetical protein | phrog_2507 | unknown function | unknown function | 1 | 9751 | 9948 |
| YP_008058909.1 | NC_021324_p83 | portal protein | phrog_104 | portal protein | head and packaging | -1 | 42694 | 44136 |
| YP_008058885.1 | NC_021324_p59 | structural protein | phrog_346 | minor tail protein | tail | -1 | 26495 | 28267 |
| YP_008058831.1 | NC_021324_p5 | hypothetical protein | phrog_5017 | unknown function | unknown function | 1 | 1506 | 1820 |
| YP_008058923.1 | NC_021324_p97 | hypothetical protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 52475 | 52789 |
| YP_008058892.1 | NC_021324_p66 | hypothetical protein | phrog_1543 | minor tail protein | tail | -1 | 31347 | 31529 |
| YP_008058916.1 | NC_021324_p90 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48292 | 48966 |
| YP_008058900.1 | NC_021324_p74 | hypothetical protein | phrog_123 | tail terminator | connector | -1 | 37902 | 38348 |
| YP_008058862.1 | NC_021324_p36 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | 1 | 13912 | 14679 |
| YP_008058832.1 | NC_021324_p6 | hypothetical protein | phrog_2985 | unknown function | unknown function | 1 | 2088 | 2243 |
| YP_008058910.1 | NC_021324_p84 | terminase | phrog_9 | terminase large subunit | head and packaging | -1 | 44133 | 45557 |
| YP_008058915.1 | NC_021324_p89 | hypothetical protein | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 48193 | 48774 |
| YP_008058844.1 | NC_021324_p18 | repressor protein | phrog_357 | transcriptional repressor | transcription regulation | 1 | 6260 | 6772 |
| YP_008058847.1 | NC_021324_p21 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 7514 | 7651 |
| YP_008058913.1 | NC_021324_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46370 | 47155 |
| YP_008058841.1 | NC_021324_p15 | hypothetical protein | phrog_1720 | unknown function | unknown function | 1 | 5236 | 5403 |
| YP_008058893.1 | NC_021324_p67 | minor tail protein | phrog_106 | minor tail protein | tail | -1 | 31548 | 33605 |
| YP_008058914.1 | NC_021324_p88 | lysin A | phrog_317 | endolysin | lysis | -1 | 46799 | 47959 |
| YP_008058828.1 | NC_021324_p2 | hypothetical protein | phrog_8345 | unknown function | unknown function | 1 | 580 | 819 |
| YP_008058838.1 | NC_021324_p12 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | 1 | 4460 | 4627 |
| YP_008058894.1 | NC_021324_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32367 | 33566 |
| YP_008058873.1 | NC_021324_p47 | hypothetical protein | phrog_1860 | unknown function | unknown function | 1 | 19857 | 20003 |
| YP_008058842.1 | NC_021324_p16 | hypothetical protein | phrog_7977 | unknown function | unknown function | 1 | 5437 | 5706 |
| YP_008058884.1 | NC_021324_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25369 | 26526 |
| YP_008058866.1 | NC_021324_p40 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | 1 | 16147 | 16638 |
| YP_008058857.1 | NC_021324_p31 | hypothetical protein | phrog_22335 | unknown function | unknown function | 1 | 11921 | 12148 |
| YP_008058917.1 | NC_021324_p91 | hypothetical protein | phrog_747 | unknown function | unknown function | -1 | 48774 | 49031 |
| YP_008058871.1 | NC_021324_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19505 | 19648 |
| YP_008058899.1 | NC_021324_p73 | major tail protein | phrog_117 | major tail protein | tail | -1 | 37042 | 37893 |
| YP_008058921.1 | NC_021324_p95 | hypothetical protein | phrog_2830 | unknown function | unknown function | -1 | 51576 | 51887 |
| YP_008058898.1 | NC_021324_p72 | hypothetical protein | phrog_330 | tail assembly chaperone | tail | -1 | 36543 | 36920 |
| YP_008058860.1 | NC_021324_p34 | hypothetical protein | phrog_1167 | phosphofructokinase | other | 1 | 13170 | 13736 |
| YP_008058918.1 | NC_021324_p92 | hypothetical protein | phrog_1718 | tail protein | tail | -1 | 49039 | 49299 |
| YP_008058905.1 | NC_021324_p79 | head structural protein | phrog_10 | major head protein | head and packaging | -1 | 40155 | 40823 |
| YP_008058897.1 | NC_021324_p71 | hypothetical protein | phrog_3656 | tail assembly chaperone | tail | -1 | 36121 | 36492 |
| YP_008058856.1 | NC_021324_p30 | hypothetical protein | phrog_397 | unknown function | unknown function | 1 | 11787 | 11921 |
| YP_008058859.1 | NC_021324_p33 | DNA topoisomerase-primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 12703 | 13173 |
| YP_008058883.1 | NC_021324_p57 | beta lactamase | phrog_382 | minor tail protein with lysin activity | tail | -1 | 25024 | 26502 |
| YP_008058855.1 | NC_021324_p29 | Endo VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 11314 | 11790 |
| YP_008058920.1 | NC_021324_p94 | tail fiber-like protein | phrog_1197 | tail protein | tail | -1 | 50033 | 51103 |
| YP_008058880.1 | NC_021324_p54 | hypothetical protein | phrog_20812 | unknown function | unknown function | -1 | 24195 | 24413 |
| YP_008058849.1 | NC_021324_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 8213 | 8659 |
| YP_008058888.1 | NC_021324_p62 | hypothetical protein | phrog_352 | minor tail protein | tail | -1 | 29061 | 29507 |
| YP_008058878.1 | NC_021324_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22866 | 23330 |
| YP_008058881.1 | NC_021324_p55 | hypothetical protein | phrog_1560 | unknown function | unknown function | -1 | 24410 | 24601 |
| YP_008058834.1 | NC_021324_p8 | S-adenosylmethionine-dependent methyltransferases | phrog_363 | DNA methyltransferase | other | 1 | 2802 | 3581 |
| YP_008058902.1 | NC_021324_p76 | hypothetical protein | phrog_320 | head closure Hc1 | connector | -1 | 38747 | 39109 |
| YP_008058887.1 | NC_021324_p61 | hypothetical protein | phrog_981 | minor tail protein | tail | -1 | 28717 | 29064 |
| YP_008058872.1 | NC_021324_p46 | hypothetical protein | phrog_1971 | unknown function | unknown function | 1 | 19645 | 19911 |
| YP_008058837.1 | NC_021324_p11 | hypothetical protein | phrog_2093 | unknown function | unknown function | 1 | 4335 | 4463 |
| YP_008058836.1 | NC_021324_p10 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 4167 | 4316 |
| YP_008058853.1 | NC_021324_p27 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 9948 | 10769 |
| YP_008058858.1 | NC_021324_p32 | hypothetical protein | phrog_1783 | unknown function | unknown function | 1 | 12148 | 12312 |
| YP_008058845.1 | NC_021324_p19 | hypothetical protein | phrog_1809 | unknown function | unknown function | 1 | 6814 | 7209 |
| YP_008058904.1 | NC_021324_p78 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | -1 | 39558 | 40076 |
| YP_008058829.1 | NC_021324_p3 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 881 | 1090 |
| YP_008058907.1 | NC_021324_p81 | hypothetical protein | phrog_233 | head scaffolding protein | head and packaging | -1 | 41185 | 41697 |
| YP_008058874.1 | NC_021324_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20122 | 20388 |
| YP_008058877.1 | NC_021324_p51 | integrase | phrog_95 | integrase | integration and excision | -1 | 21383 | 22951 |
| YP_008058850.1 | NC_021324_p24 | hypothetical protein | phrog_2184 | unknown function | unknown function | 1 | 8908 | 9153 |
| YP_008058833.1 | NC_021324_p7 | hypothetical protein | phrog_3414 | unknown function | unknown function | 1 | 2543 | 2827 |
| YP_008058865.1 | NC_021324_p39 | hypothetical protein | phrog_2094 | unknown function | unknown function | 1 | 15783 | 16112 |
| YP_008058891.1 | NC_021324_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30368 | 30934 |
| YP_008058889.1 | NC_021324_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29506 | 30081 |
| YP_008058863.1 | NC_021324_p37 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | 1 | 14609 | 14824 |
| YP_008058870.1 | NC_021324_p44 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 18829 | 19266 |
| YP_008058886.1 | NC_021324_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27519 | 28280 |
| YP_008058911.1 | NC_021324_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45622 | 45810 |
| YP_008058875.1 | NC_021324_p49 | hypothetical protein | phrog_1966 | unknown function | unknown function | 1 | 20595 | 20819 |
| YP_008058851.1 | NC_021324_p25 | hypothetical protein | phrog_520 | unknown function | unknown function | 1 | 9123 | 9443 |
| YP_008058830.1 | NC_021324_p4 | hypothetical protein | phrog_5533 | unknown function | unknown function | 1 | 1321 | 1506 |
| YP_008058864.1 | NC_021324_p38 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | 1 | 14817 | 15608 |