Genomic map of Mycobacterium phage CASbig (NC_021324)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021324
Definition
Mycobacterium phage CASbig, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
53369
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
97
%GC
63.61
Number of singletons
16
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008058868.1 NC_021324_p42 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 17269 18765
YP_008058867.1 NC_021324_p41 hypothetical protein phrog_1781 unknown function unknown function 1 16699 16899
YP_008058835.1 NC_021324_p9 hypothetical protein phrog_4631 unknown function unknown function 1 3853 4170
YP_008058876.1 NC_021324_p50 hypothetical protein phrog_289 GTP-binding domain other 1 20816 21307
YP_008058848.1 NC_021324_p22 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 7644 8462
YP_008058895.1 NC_021324_p69 tapemeasure protein phrog_305 tail length tape measure protein tail -1 33629 36007
YP_008058919.1 NC_021324_p93 structural protein phrog_553 minor tail protein tail -1 49313 50014
YP_008058908.1 NC_021324_p82 hypothetical protein phrog_193 head maturation protease head and packaging -1 41756 42595
YP_008058869.1 NC_021324_p43 hypothetical protein singleton unknown function unknown function -1 18490 18945
YP_008058879.1 NC_021324_p53 hypothetical protein phrog_411 unknown function unknown function -1 23037 23333
YP_008058912.1 NC_021324_p86 lysin B phrog_102 endolysin lysis -1 45841 46809
YP_008058840.1 NC_021324_p14 hypothetical protein phrog_1387 unknown function unknown function 1 4934 5137
YP_008058882.1 NC_021324_p56 hypothetical protein phrog_644 unknown function unknown function -1 24611 24931
YP_008058843.1 NC_021324_p17 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision 1 5699 5998
YP_008058854.1 NC_021324_p28 hypothetical protein phrog_26301 unknown function unknown function 1 10769 10996
YP_008058839.1 NC_021324_p13 hypothetical protein phrog_1155 unknown function unknown function 1 4627 4815
YP_008058827.1 NC_021324_p1 hypothetical protein singleton unknown function unknown function 1 392 583
YP_008058890.1 NC_021324_p64 minor tail protein phrog_110 minor tail protein tail -1 29545 31347
YP_008058922.1 NC_021324_p96 hypothetical protein phrog_226 minor tail protein tail -1 52000 52440
YP_008058861.1 NC_021324_p35 hypothetical protein phrog_1503 unknown function unknown function 1 13706 13915
YP_008058846.1 NC_021324_p20 hypothetical protein phrog_36264 unknown function unknown function 1 7410 7514
YP_008058896.1 NC_021324_p70 hypothetical protein singleton unknown function unknown function 1 34119 35813
YP_008058906.1 NC_021324_p80 hypothetical protein singleton unknown function unknown function 1 40771 41196
YP_008058903.1 NC_021324_p77 hypothetical protein phrog_137 head-tail adaptor Ad1 connector -1 39109 39558
YP_008058901.1 NC_021324_p75 hypothetical protein phrog_321 tail completion or Neck1 protein connector -1 38352 38747
YP_008058852.1 NC_021324_p26 hypothetical protein phrog_2507 unknown function unknown function 1 9751 9948
YP_008058909.1 NC_021324_p83 portal protein phrog_104 portal protein head and packaging -1 42694 44136
YP_008058885.1 NC_021324_p59 structural protein phrog_346 minor tail protein tail -1 26495 28267
YP_008058831.1 NC_021324_p5 hypothetical protein phrog_5017 unknown function unknown function 1 1506 1820
YP_008058923.1 NC_021324_p97 hypothetical protein phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism -1 52475 52789
YP_008058892.1 NC_021324_p66 hypothetical protein phrog_1543 minor tail protein tail -1 31347 31529
YP_008058916.1 NC_021324_p90 hypothetical protein singleton unknown function unknown function 1 48292 48966
YP_008058900.1 NC_021324_p74 hypothetical protein phrog_123 tail terminator connector -1 37902 38348
YP_008058862.1 NC_021324_p36 hypothetical protein phrog_221 metallo-phosphoesterase other 1 13912 14679
YP_008058832.1 NC_021324_p6 hypothetical protein phrog_2985 unknown function unknown function 1 2088 2243
YP_008058910.1 NC_021324_p84 terminase phrog_9 terminase large subunit head and packaging -1 44133 45557
YP_008058915.1 NC_021324_p89 hypothetical protein phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism -1 48193 48774
YP_008058844.1 NC_021324_p18 repressor protein phrog_357 transcriptional repressor transcription regulation 1 6260 6772
YP_008058847.1 NC_021324_p21 hypothetical protein phrog_1311 unknown function unknown function 1 7514 7651
YP_008058913.1 NC_021324_p87 hypothetical protein singleton unknown function unknown function 1 46370 47155
YP_008058841.1 NC_021324_p15 hypothetical protein phrog_1720 unknown function unknown function 1 5236 5403
YP_008058893.1 NC_021324_p67 minor tail protein phrog_106 minor tail protein tail -1 31548 33605
YP_008058914.1 NC_021324_p88 lysin A phrog_317 endolysin lysis -1 46799 47959
YP_008058828.1 NC_021324_p2 hypothetical protein phrog_8345 unknown function unknown function 1 580 819
YP_008058838.1 NC_021324_p12 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision 1 4460 4627
YP_008058894.1 NC_021324_p68 hypothetical protein singleton unknown function unknown function 1 32367 33566
YP_008058873.1 NC_021324_p47 hypothetical protein phrog_1860 unknown function unknown function 1 19857 20003
YP_008058842.1 NC_021324_p16 hypothetical protein phrog_7977 unknown function unknown function 1 5437 5706
YP_008058884.1 NC_021324_p58 hypothetical protein singleton unknown function unknown function 1 25369 26526
YP_008058866.1 NC_021324_p40 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism 1 16147 16638
YP_008058857.1 NC_021324_p31 hypothetical protein phrog_22335 unknown function unknown function 1 11921 12148
YP_008058917.1 NC_021324_p91 hypothetical protein phrog_747 unknown function unknown function -1 48774 49031
YP_008058871.1 NC_021324_p45 hypothetical protein singleton unknown function unknown function 1 19505 19648
YP_008058899.1 NC_021324_p73 major tail protein phrog_117 major tail protein tail -1 37042 37893
YP_008058921.1 NC_021324_p95 hypothetical protein phrog_2830 unknown function unknown function -1 51576 51887
YP_008058898.1 NC_021324_p72 hypothetical protein phrog_330 tail assembly chaperone tail -1 36543 36920
YP_008058860.1 NC_021324_p34 hypothetical protein phrog_1167 phosphofructokinase other 1 13170 13736
YP_008058918.1 NC_021324_p92 hypothetical protein phrog_1718 tail protein tail -1 49039 49299
YP_008058905.1 NC_021324_p79 head structural protein phrog_10 major head protein head and packaging -1 40155 40823
YP_008058897.1 NC_021324_p71 hypothetical protein phrog_3656 tail assembly chaperone tail -1 36121 36492
YP_008058856.1 NC_021324_p30 hypothetical protein phrog_397 unknown function unknown function 1 11787 11921
YP_008058859.1 NC_021324_p33 DNA topoisomerase-primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 12703 13173
YP_008058883.1 NC_021324_p57 beta lactamase phrog_382 minor tail protein with lysin activity tail -1 25024 26502
YP_008058855.1 NC_021324_p29 Endo VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism 1 11314 11790
YP_008058920.1 NC_021324_p94 tail fiber-like protein phrog_1197 tail protein tail -1 50033 51103
YP_008058880.1 NC_021324_p54 hypothetical protein phrog_20812 unknown function unknown function -1 24195 24413
YP_008058849.1 NC_021324_p23 hypothetical protein singleton unknown function unknown function -1 8213 8659
YP_008058888.1 NC_021324_p62 hypothetical protein phrog_352 minor tail protein tail -1 29061 29507
YP_008058878.1 NC_021324_p52 hypothetical protein singleton unknown function unknown function 1 22866 23330
YP_008058881.1 NC_021324_p55 hypothetical protein phrog_1560 unknown function unknown function -1 24410 24601
YP_008058834.1 NC_021324_p8 S-adenosylmethionine-dependent methyltransferases phrog_363 DNA methyltransferase other 1 2802 3581
YP_008058902.1 NC_021324_p76 hypothetical protein phrog_320 head closure Hc1 connector -1 38747 39109
YP_008058887.1 NC_021324_p61 hypothetical protein phrog_981 minor tail protein tail -1 28717 29064
YP_008058872.1 NC_021324_p46 hypothetical protein phrog_1971 unknown function unknown function 1 19645 19911
YP_008058837.1 NC_021324_p11 hypothetical protein phrog_2093 unknown function unknown function 1 4335 4463
YP_008058836.1 NC_021324_p10 hypothetical protein phrog_932 unknown function unknown function 1 4167 4316
YP_008058853.1 NC_021324_p27 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 9948 10769
YP_008058858.1 NC_021324_p32 hypothetical protein phrog_1783 unknown function unknown function 1 12148 12312
YP_008058845.1 NC_021324_p19 hypothetical protein phrog_1809 unknown function unknown function 1 6814 7209
YP_008058904.1 NC_021324_p78 hypothetical protein phrog_1857 head-tail connector protein connector -1 39558 40076
YP_008058829.1 NC_021324_p3 hypothetical protein phrog_828 unknown function unknown function 1 881 1090
YP_008058907.1 NC_021324_p81 hypothetical protein phrog_233 head scaffolding protein head and packaging -1 41185 41697
YP_008058874.1 NC_021324_p48 hypothetical protein singleton unknown function unknown function -1 20122 20388
YP_008058877.1 NC_021324_p51 integrase phrog_95 integrase integration and excision -1 21383 22951
YP_008058850.1 NC_021324_p24 hypothetical protein phrog_2184 unknown function unknown function 1 8908 9153
YP_008058833.1 NC_021324_p7 hypothetical protein phrog_3414 unknown function unknown function 1 2543 2827
YP_008058865.1 NC_021324_p39 hypothetical protein phrog_2094 unknown function unknown function 1 15783 16112
YP_008058891.1 NC_021324_p65 hypothetical protein singleton unknown function unknown function 1 30368 30934
YP_008058889.1 NC_021324_p63 hypothetical protein singleton unknown function unknown function 1 29506 30081
YP_008058863.1 NC_021324_p37 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision 1 14609 14824
YP_008058870.1 NC_021324_p44 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 18829 19266
YP_008058886.1 NC_021324_p60 hypothetical protein singleton unknown function unknown function 1 27519 28280
YP_008058911.1 NC_021324_p85 hypothetical protein singleton unknown function unknown function 1 45622 45810
YP_008058875.1 NC_021324_p49 hypothetical protein phrog_1966 unknown function unknown function 1 20595 20819
YP_008058851.1 NC_021324_p25 hypothetical protein phrog_520 unknown function unknown function 1 9123 9443
YP_008058830.1 NC_021324_p4 hypothetical protein phrog_5533 unknown function unknown function 1 1321 1506
YP_008058864.1 NC_021324_p38 hypothetical protein phrog_354 sigma-K factor transcription regulation 1 14817 15608