Genomic map of Staphylococcus phage StauST398-1 (NC_021326)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021326
Definition
Staphylococcus phage StauST398-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus.
DB of origin
REFSEQ
Length
45242
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
69
%GC
34.46
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008058992.1 NC_021326_p19 tape measure protein phrog_58 tail length tape measure protein tail -1 16912 19881
YP_008058981.1 NC_021326_p8 hypothetical protein phrog_1262 unknown function unknown function -1 5834 6229
YP_008059020.1 NC_021326_p47 DnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism -1 33100 33879
YP_008059042.1 NC_021326_p69 hypothetical protein phrog_1176 unknown function unknown function 1 44587 44769
YP_008059038.1 NC_021326_p65 repressor phrog_4 transcriptional repressor transcription regulation 1 42375 43088
YP_008059037.1 NC_021326_p64 DNA-binding protein phrog_3 transcriptional repressor transcription regulation -1 41979 42242
YP_008059019.1 NC_021326_p46 hypothetical protein phrog_809 transcriptional regulator transcription regulation -1 32945 33106
YP_008059022.1 NC_021326_p49 hypothetical protein phrog_2232 unknown function unknown function 1 34724 35572
YP_008058978.1 NC_021326_p5 hypothetical protein phrog_6149 unknown function unknown function 1 3487 4044
YP_008058997.1 NC_021326_p24 major tail protein phrog_5 tail completion or Neck1 protein connector -1 21799 22149
YP_008059040.1 NC_021326_p67 hypothetical protein phrog_6563 unknown function unknown function 1 44042 44383
YP_008059023.1 NC_021326_p50 hypothetical protein phrog_398 unknown function unknown function -1 35679 36350
YP_008059026.1 NC_021326_p53 bacteriophage resistance factor phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism -1 37717 38196
YP_008059029.1 NC_021326_p56 hypothetical protein phrog_369 unknown function unknown function -1 38874 39035
YP_008059041.1 NC_021326_p68 hypothetical protein phrog_17436 unknown function unknown function 1 44442 44531
YP_008058975.1 NC_021326_p2 hypothetical protein phrog_19469 unknown function unknown function 1 1937 2245
YP_008059021.1 NC_021326_p48 phage replication protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism -1 33889 34659
YP_008059017.1 NC_021326_p44 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 32296 32700
YP_008058976.1 NC_021326_p3 hypothetical protein phrog_20340 unknown function unknown function 1 2293 2484
YP_008058990.1 NC_021326_p17 minor structural protein phrog_663 minor head protein head and packaging -1 14065 15951
YP_008058984.1 NC_021326_p11 hypothetical protein phrog_276 unknown function unknown function -1 9431 9730
YP_008058994.1 NC_021326_p21 hypothetical protein phrog_183 tail chaperone protein tail -1 20246 20740
YP_008058986.1 NC_021326_p13 hypothetical protein singleton unknown function unknown function -1 9954 10088
YP_008059005.1 NC_021326_p32 large terminase subunit phrog_2 terminase large subunit head and packaging -1 27074 28060
YP_008058980.1 NC_021326_p7 holin protein phrog_263 holin lysis -1 5503 5778
YP_008058998.1 NC_021326_p25 head-tail adaptor phrog_25 head closure Hc1 connector -1 22199 22534
YP_008059007.1 NC_021326_p34 hypothetical protein phrog_1058 unknown function unknown function -1 29122 29523
YP_008059000.1 NC_021326_p27 rho terminator factor phrog_390 Arc-like repressor transcription regulation -1 22841 23167
YP_008059003.1 NC_021326_p30 head morphogenesis protein phrog_115 minor head protein head and packaging -1 24723 25445
YP_008059006.1 NC_021326_p33 small terminase subunit phrog_1595 terminase small subunit head and packaging -1 28275 28646
YP_008058993.1 NC_021326_p20 tail assembly protein phrog_1404 tail protein tail -1 19884 20201
YP_008058987.1 NC_021326_p14 hypothetical protein singleton unknown function unknown function 1 10048 10362
YP_008059030.1 NC_021326_p57 hypothetical protein phrog_5920 unknown function unknown function -1 39049 39258
YP_008059011.1 NC_021326_p38 dimeric dUTPase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism -1 30320 30853
YP_008059039.1 NC_021326_p66 exonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 43104 44036
YP_008059002.1 NC_021326_p29 scaffolding protein phrog_194 head scaffolding protein head and packaging -1 24029 24625
YP_008058983.1 NC_021326_p10 tail tip protein phrog_759 tail associated cell-wall hydrolase other -1 7420 9294
YP_008059001.1 NC_021326_p28 major capsid protein phrog_544 major head protein head and packaging -1 23184 24008
YP_008059004.1 NC_021326_p31 portal protein phrog_64 portal protein head and packaging -1 25642 26979
YP_008059024.1 NC_021326_p51 single strand DNA binding protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 36363 36914
YP_008059009.1 NC_021326_p36 hypothetical protein phrog_301 secreted protein other -1 29694 30080
YP_008059036.1 NC_021326_p63 hypothetical protein phrog_750 unknown function unknown function 1 41430 41759
YP_008059013.1 NC_021326_p40 hypothetical protein phrog_266 unknown function unknown function -1 31193 31444
YP_008059018.1 NC_021326_p45 hypothetical protein phrog_433 unknown function unknown function -1 32711 32932
YP_008059010.1 NC_021326_p37 hypothetical protein phrog_278 transcriptional regulator transcription regulation -1 30077 30283
YP_008058999.1 NC_021326_p26 phage gp6-like head-tail connector protein phrog_1161 head-tail adaptor connector -1 22527 22841
YP_008058982.1 NC_021326_p9 phage tail fiber phrog_1125 tail fiber protein tail -1 6235 7407
YP_008059025.1 NC_021326_p52 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 36944 37717
YP_008059028.1 NC_021326_p55 hypothetical protein phrog_2182 unknown function unknown function -1 38452 38781
YP_008059012.1 NC_021326_p39 hypothetical protein phrog_4872 unknown function unknown function -1 30868 31029
YP_008059035.1 NC_021326_p62 anti repressor phrog_63 anti-repressor Ant transcription regulation -1 40627 41379
YP_008058995.1 NC_021326_p22 phage major tail protein phrog_238 major tail protein tail -1 20802 21362
YP_008058989.1 NC_021326_p16 minor structural protein phrog_287 minor tail protein tail -1 12154 14052
YP_008059008.1 NC_021326_p35 integrase regulator phrog_152 RinB-like transcriptional activator transcription regulation -1 29524 29697
YP_008058985.1 NC_021326_p12 hypothetical protein phrog_23700 unknown function unknown function -1 9771 9854
YP_008059032.1 NC_021326_p59 hypothetical protein phrog_2366 unknown function unknown function 1 40041 40250
YP_008059016.1 NC_021326_p43 hypothetical protein phrog_299 unknown function unknown function -1 32106 32291
YP_008059033.1 NC_021326_p60 hypothetical protein phrog_1263 unknown function unknown function -1 40240 40383
YP_008058974.1 NC_021326_p1 integrase phrog_1 integrase integration and excision 1 239 1276
YP_008058991.1 NC_021326_p18 phage tail protein phrog_33 distal tail protein Dit tail -1 15962 16570
YP_008058996.1 NC_021326_p23 hypothetical protein phrog_176 tail terminator connector -1 21349 21786
YP_008059014.1 NC_021326_p41 hypothetical protein phrog_258 virulence associated other -1 31485 31733
YP_008058988.1 NC_021326_p15 hypothetical protein phrog_257 minor tail protein tail -1 10331 12154
YP_008058977.1 NC_021326_p4 complement inhibitor SCIN phrog_4954 complement inhibitor other -1 2537 2887
YP_008058979.1 NC_021326_p6 amidase phrog_489 endolysin lysis -1 4104 5375
YP_008059031.1 NC_021326_p58 prophage antirepressor phrog_463 anti-repressor transcription regulation -1 39283 39984
YP_008059015.1 NC_021326_p42 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism -1 31734 32042
YP_008059034.1 NC_021326_p61 hypothetical protein phrog_845 unknown function unknown function -1 40414 40611
YP_008059027.1 NC_021326_p54 hypothetical protein phrog_401 unknown function unknown function -1 38211 38471