| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021326 |
Definition |
Staphylococcus phage StauST398-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus. |
DB of origin |
REFSEQ |
Length |
45242 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
69 |
%GC |
34.46 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008058992.1 | NC_021326_p19 | tape measure protein | phrog_58 | tail length tape measure protein | tail | -1 | 16912 | 19881 |
| YP_008058981.1 | NC_021326_p8 | hypothetical protein | phrog_1262 | unknown function | unknown function | -1 | 5834 | 6229 |
| YP_008059020.1 | NC_021326_p47 | DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | -1 | 33100 | 33879 |
| YP_008059042.1 | NC_021326_p69 | hypothetical protein | phrog_1176 | unknown function | unknown function | 1 | 44587 | 44769 |
| YP_008059038.1 | NC_021326_p65 | repressor | phrog_4 | transcriptional repressor | transcription regulation | 1 | 42375 | 43088 |
| YP_008059037.1 | NC_021326_p64 | DNA-binding protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 41979 | 42242 |
| YP_008059019.1 | NC_021326_p46 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | -1 | 32945 | 33106 |
| YP_008059022.1 | NC_021326_p49 | hypothetical protein | phrog_2232 | unknown function | unknown function | 1 | 34724 | 35572 |
| YP_008058978.1 | NC_021326_p5 | hypothetical protein | phrog_6149 | unknown function | unknown function | 1 | 3487 | 4044 |
| YP_008058997.1 | NC_021326_p24 | major tail protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 21799 | 22149 |
| YP_008059040.1 | NC_021326_p67 | hypothetical protein | phrog_6563 | unknown function | unknown function | 1 | 44042 | 44383 |
| YP_008059023.1 | NC_021326_p50 | hypothetical protein | phrog_398 | unknown function | unknown function | -1 | 35679 | 36350 |
| YP_008059026.1 | NC_021326_p53 | bacteriophage resistance factor | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | -1 | 37717 | 38196 |
| YP_008059029.1 | NC_021326_p56 | hypothetical protein | phrog_369 | unknown function | unknown function | -1 | 38874 | 39035 |
| YP_008059041.1 | NC_021326_p68 | hypothetical protein | phrog_17436 | unknown function | unknown function | 1 | 44442 | 44531 |
| YP_008058975.1 | NC_021326_p2 | hypothetical protein | phrog_19469 | unknown function | unknown function | 1 | 1937 | 2245 |
| YP_008059021.1 | NC_021326_p48 | phage replication protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | -1 | 33889 | 34659 |
| YP_008059017.1 | NC_021326_p44 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 32296 | 32700 |
| YP_008058976.1 | NC_021326_p3 | hypothetical protein | phrog_20340 | unknown function | unknown function | 1 | 2293 | 2484 |
| YP_008058990.1 | NC_021326_p17 | minor structural protein | phrog_663 | minor head protein | head and packaging | -1 | 14065 | 15951 |
| YP_008058984.1 | NC_021326_p11 | hypothetical protein | phrog_276 | unknown function | unknown function | -1 | 9431 | 9730 |
| YP_008058994.1 | NC_021326_p21 | hypothetical protein | phrog_183 | tail chaperone protein | tail | -1 | 20246 | 20740 |
| YP_008058986.1 | NC_021326_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9954 | 10088 |
| YP_008059005.1 | NC_021326_p32 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 27074 | 28060 |
| YP_008058980.1 | NC_021326_p7 | holin protein | phrog_263 | holin | lysis | -1 | 5503 | 5778 |
| YP_008058998.1 | NC_021326_p25 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | -1 | 22199 | 22534 |
| YP_008059007.1 | NC_021326_p34 | hypothetical protein | phrog_1058 | unknown function | unknown function | -1 | 29122 | 29523 |
| YP_008059000.1 | NC_021326_p27 | rho terminator factor | phrog_390 | Arc-like repressor | transcription regulation | -1 | 22841 | 23167 |
| YP_008059003.1 | NC_021326_p30 | head morphogenesis protein | phrog_115 | minor head protein | head and packaging | -1 | 24723 | 25445 |
| YP_008059006.1 | NC_021326_p33 | small terminase subunit | phrog_1595 | terminase small subunit | head and packaging | -1 | 28275 | 28646 |
| YP_008058993.1 | NC_021326_p20 | tail assembly protein | phrog_1404 | tail protein | tail | -1 | 19884 | 20201 |
| YP_008058987.1 | NC_021326_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10048 | 10362 |
| YP_008059030.1 | NC_021326_p57 | hypothetical protein | phrog_5920 | unknown function | unknown function | -1 | 39049 | 39258 |
| YP_008059011.1 | NC_021326_p38 | dimeric dUTPase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 30320 | 30853 |
| YP_008059039.1 | NC_021326_p66 | exonuclease | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 43104 | 44036 |
| YP_008059002.1 | NC_021326_p29 | scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | -1 | 24029 | 24625 |
| YP_008058983.1 | NC_021326_p10 | tail tip protein | phrog_759 | tail associated cell-wall hydrolase | other | -1 | 7420 | 9294 |
| YP_008059001.1 | NC_021326_p28 | major capsid protein | phrog_544 | major head protein | head and packaging | -1 | 23184 | 24008 |
| YP_008059004.1 | NC_021326_p31 | portal protein | phrog_64 | portal protein | head and packaging | -1 | 25642 | 26979 |
| YP_008059024.1 | NC_021326_p51 | single strand DNA binding protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 36363 | 36914 |
| YP_008059009.1 | NC_021326_p36 | hypothetical protein | phrog_301 | secreted protein | other | -1 | 29694 | 30080 |
| YP_008059036.1 | NC_021326_p63 | hypothetical protein | phrog_750 | unknown function | unknown function | 1 | 41430 | 41759 |
| YP_008059013.1 | NC_021326_p40 | hypothetical protein | phrog_266 | unknown function | unknown function | -1 | 31193 | 31444 |
| YP_008059018.1 | NC_021326_p45 | hypothetical protein | phrog_433 | unknown function | unknown function | -1 | 32711 | 32932 |
| YP_008059010.1 | NC_021326_p37 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | -1 | 30077 | 30283 |
| YP_008058999.1 | NC_021326_p26 | phage gp6-like head-tail connector protein | phrog_1161 | head-tail adaptor | connector | -1 | 22527 | 22841 |
| YP_008058982.1 | NC_021326_p9 | phage tail fiber | phrog_1125 | tail fiber protein | tail | -1 | 6235 | 7407 |
| YP_008059025.1 | NC_021326_p52 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 36944 | 37717 |
| YP_008059028.1 | NC_021326_p55 | hypothetical protein | phrog_2182 | unknown function | unknown function | -1 | 38452 | 38781 |
| YP_008059012.1 | NC_021326_p39 | hypothetical protein | phrog_4872 | unknown function | unknown function | -1 | 30868 | 31029 |
| YP_008059035.1 | NC_021326_p62 | anti repressor | phrog_63 | anti-repressor Ant | transcription regulation | -1 | 40627 | 41379 |
| YP_008058995.1 | NC_021326_p22 | phage major tail protein | phrog_238 | major tail protein | tail | -1 | 20802 | 21362 |
| YP_008058989.1 | NC_021326_p16 | minor structural protein | phrog_287 | minor tail protein | tail | -1 | 12154 | 14052 |
| YP_008059008.1 | NC_021326_p35 | integrase regulator | phrog_152 | RinB-like transcriptional activator | transcription regulation | -1 | 29524 | 29697 |
| YP_008058985.1 | NC_021326_p12 | hypothetical protein | phrog_23700 | unknown function | unknown function | -1 | 9771 | 9854 |
| YP_008059032.1 | NC_021326_p59 | hypothetical protein | phrog_2366 | unknown function | unknown function | 1 | 40041 | 40250 |
| YP_008059016.1 | NC_021326_p43 | hypothetical protein | phrog_299 | unknown function | unknown function | -1 | 32106 | 32291 |
| YP_008059033.1 | NC_021326_p60 | hypothetical protein | phrog_1263 | unknown function | unknown function | -1 | 40240 | 40383 |
| YP_008058974.1 | NC_021326_p1 | integrase | phrog_1 | integrase | integration and excision | 1 | 239 | 1276 |
| YP_008058991.1 | NC_021326_p18 | phage tail protein | phrog_33 | distal tail protein Dit | tail | -1 | 15962 | 16570 |
| YP_008058996.1 | NC_021326_p23 | hypothetical protein | phrog_176 | tail terminator | connector | -1 | 21349 | 21786 |
| YP_008059014.1 | NC_021326_p41 | hypothetical protein | phrog_258 | virulence associated | other | -1 | 31485 | 31733 |
| YP_008058988.1 | NC_021326_p15 | hypothetical protein | phrog_257 | minor tail protein | tail | -1 | 10331 | 12154 |
| YP_008058977.1 | NC_021326_p4 | complement inhibitor SCIN | phrog_4954 | complement inhibitor | other | -1 | 2537 | 2887 |
| YP_008058979.1 | NC_021326_p6 | amidase | phrog_489 | endolysin | lysis | -1 | 4104 | 5375 |
| YP_008059031.1 | NC_021326_p58 | prophage antirepressor | phrog_463 | anti-repressor | transcription regulation | -1 | 39283 | 39984 |
| YP_008059015.1 | NC_021326_p42 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | -1 | 31734 | 32042 |
| YP_008059034.1 | NC_021326_p61 | hypothetical protein | phrog_845 | unknown function | unknown function | -1 | 40414 | 40611 |
| YP_008059027.1 | NC_021326_p54 | hypothetical protein | phrog_401 | unknown function | unknown function | -1 | 38211 | 38471 |