Genomic map of Halovirus HCTV-5 (NC_021327)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021327
Definition
Halovirus HCTV-5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; unclassified viruses; unclassified DNA viruses; unclassified archaeal dsDNA viruses; Haloviruses.
DB of origin
REFSEQ
Length
102105
Host Name
Haloarcula californiae
Host domain
Archaea
Is prophage?
undef
Number of proteins
166
%GC
57.59
Number of singletons
33
Number of paralogs
7

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008059056.1 NC_021327_p14 hypothetical protein singleton unknown function unknown function -1 4056 4223
YP_008059141.1 NC_021327_p99 hypothetical protein phrog_24900 unknown function unknown function -1 56611 57654
YP_008059095.1 NC_021327_p53 hypothetical protein phrog_25017 unknown function unknown function -1 26825 27082
YP_008059161.1 NC_021327_p119 hypothetical protein phrog_26555 unknown function unknown function 1 78902 79279
YP_008059138.1 NC_021327_p96 hypothetical protein phrog_25687 unknown function unknown function -1 53754 54611
YP_008059134.1 NC_021327_p92 replication factor C small subunit phrog_168 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism -1 50491 51474
YP_008059044.1 NC_021327_p2 hypothetical protein singleton unknown function unknown function 1 653 1138
YP_008059125.1 NC_021327_p83 AdoMet-MTase phrog_56 DNA methyltransferase other -1 43038 43892
YP_008059052.1 NC_021327_p10 hypothetical protein phrog_14974 unknown function unknown function -1 3279 3431
YP_008059121.1 NC_021327_p79 hypothetical protein phrog_31918 unknown function unknown function -1 41270 41611
YP_008059101.1 NC_021327_p59 hypothetical protein phrog_23795 unknown function unknown function -1 29210 31441
YP_008059204.1 NC_021327_p162 hypothetical protein singleton unknown function unknown function 1 100164 100643
YP_008059116.1 NC_021327_p74 QueD phrog_2389 QueD-like 6-pyruvoyl-tetrahydropterin synthase moron, auxiliary metabolic gene and host takeover -1 38862 39320
YP_008059148.1 NC_021327_p106 portal protein phrog_18178 portal protein head and packaging 1 62624 64486
YP_008059100.1 NC_021327_p58 hypothetical protein singleton unknown function unknown function -1 29049 29210
YP_008059153.1 NC_021327_p111 sialidase singleton glycoside hydrolase other 1 67992 69929
YP_008059164.1 NC_021327_p122 hypothetical protein phrog_24068 unknown function unknown function 1 80053 80385
YP_008059060.1 NC_021327_p18 hypothetical protein singleton unknown function unknown function -1 5339 5596
YP_008059129.1 NC_021327_p87 DNA polymerase elongation subunit (family B) phrog_262 DNA polymerase DNA, RNA and nucleotide metabolism -1 45823 48564
YP_008059078.1 NC_021327_p36 hypothetical protein phrog_36173 unknown function unknown function -1 17305 17688
YP_008059142.1 NC_021327_p100 RadA phrog_8337 DNA repair protein DNA, RNA and nucleotide metabolism 1 57888 58799
YP_008059085.1 NC_021327_p43 hypothetical protein phrog_3301 pyrophosphatase other -1 21946 22257
YP_008059093.1 NC_021327_p51 hypothetical protein phrog_14974 unknown function unknown function -1 26427 26579
YP_008059066.1 NC_021327_p24 hypothetical protein phrog_24432 unknown function unknown function 1 7419 7811
YP_008059201.1 NC_021327_p159 hypothetical protein phrog_22958 unknown function unknown function 1 99571 99726
YP_008059149.1 NC_021327_p107 HNH protein phrog_8446 HNH endonuclease DNA, RNA and nucleotide metabolism 1 64479 65225
YP_008059053.1 NC_021327_p11 hypothetical protein phrog_32068 unknown function unknown function -1 3424 3708
YP_008059186.1 NC_021327_p144 hypothetical protein phrog_22070 unknown function unknown function 1 95457 95696
YP_008059155.1 NC_021327_p113 zeta toxin and ParB nuclease domain protein phrog_24083 unknown function unknown function 1 70811 74692
YP_008059198.1 NC_021327_p156 hypothetical protein phrog_29741 unknown function unknown function 1 99029 99202
YP_008059054.1 NC_021327_p12 hypothetical protein phrog_30219 unknown function unknown function -1 3734 3925
YP_008059127.1 NC_021327_p85 hypothetical protein singleton unknown function unknown function -1 45132 45329
YP_008059115.1 NC_021327_p73 hypothetical protein phrog_35563 unknown function unknown function -1 38728 38862
YP_008059185.1 NC_021327_p143 hypothetical protein phrog_24869 unknown function unknown function 1 94594 95460
YP_008059197.1 NC_021327_p155 hypothetical protein phrog_25102 unknown function unknown function 1 98835 99035
YP_008059108.1 NC_021327_p66 hypothetical protein phrog_38803 unknown function unknown function -1 35235 35438
YP_008059173.1 NC_021327_p131 hypothetical protein phrog_21793 unknown function unknown function 1 85889 87319
YP_008059124.1 NC_021327_p82 hypothetical protein singleton unknown function unknown function -1 42598 42732
YP_008059119.1 NC_021327_p77 hypothetical protein phrog_27747 unknown function unknown function -1 40634 41050
YP_008059174.1 NC_021327_p132 hypothetical protein phrog_18987 unknown function unknown function 1 87312 88094
YP_008059106.1 NC_021327_p64 hypothetical protein phrog_26694 unknown function unknown function -1 33998 34444
YP_008059126.1 NC_021327_p84 replication factor C large subunit phrog_11838 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism -1 43895 45139
YP_008059203.1 NC_021327_p161 hypothetical protein singleton unknown function unknown function 1 99890 100111
YP_008059075.1 NC_021327_p33 hypothetical protein phrog_24962 unknown function unknown function 1 15504 15647
YP_008059167.1 NC_021327_p125 hypothetical protein phrog_19972 unknown function unknown function 1 81676 82146
YP_008059067.1 NC_021327_p25 ribonucleotide reductase phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 7814 10792
YP_008059122.1 NC_021327_p80 QueF phrog_5949 GTP cyclohydrolase other -1 41611 42072
YP_008059131.1 NC_021327_p89 PD-(D/E)XK nuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 49197 49994
YP_008059200.1 NC_021327_p158 hypothetical protein phrog_30460 unknown function unknown function 1 99387 99578
YP_008059063.1 NC_021327_p21 hypothetical protein singleton unknown function unknown function 1 6294 6563
YP_008059180.1 NC_021327_p138 hypothetical protein singleton unknown function unknown function -1 92727 92918
YP_008059158.1 NC_021327_p116 hypothetical protein phrog_27094 unknown function unknown function 1 75392 75583
YP_008059188.1 NC_021327_p146 hypothetical protein phrog_36606 unknown function unknown function 1 95910 96092
YP_008059156.1 NC_021327_p114 LAGLIDADG endonuclease phrog_33155 HNH endonuclease DNA, RNA and nucleotide metabolism -1 74693 75166
YP_008059135.1 NC_021327_p93 TMP kinase phrog_761 thymidylate kinase other -1 51541 52131
YP_008059061.1 NC_021327_p19 hypothetical protein singleton unknown function unknown function 1 5648 5857
YP_008059094.1 NC_021327_p52 hypothetical protein phrog_26288 unknown function unknown function -1 26572 26832
YP_008059152.1 NC_021327_p110 HNH protein phrog_8446 HNH endonuclease DNA, RNA and nucleotide metabolism 1 67233 67976
YP_008059098.1 NC_021327_p56 HNH protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 27925 28401
YP_008059107.1 NC_021327_p65 hypothetical protein phrog_27319 unknown function unknown function -1 34502 35164
YP_008059090.1 NC_021327_p48 AdoMet-MTase phrog_56 DNA methyltransferase other -1 24224 25132
YP_008059047.1 NC_021327_p5 hypothetical protein phrog_29449 unknown function unknown function -1 1515 1832
YP_008059194.1 NC_021327_p152 trimeric dUTPase phrog_1663 dCTP deaminase DNA, RNA and nucleotide metabolism -1 97555 98196
YP_008059096.1 NC_021327_p54 hypothetical protein phrog_22920 unknown function unknown function -1 27079 27543
YP_008059043.1 NC_021327_p1 hypothetical protein singleton unknown function unknown function 1 399 620
YP_008059057.1 NC_021327_p15 hypothetical protein phrog_23249 unknown function unknown function -1 4508 4759
YP_008059128.1 NC_021327_p86 hypothetical protein phrog_23962 unknown function unknown function -1 45332 45829
YP_008059133.1 NC_021327_p91 hypothetical protein phrog_23435 unknown function unknown function -1 50306 50494
YP_008059196.1 NC_021327_p154 hypothetical protein singleton unknown function unknown function 1 98624 98857
YP_008059123.1 NC_021327_p81 LAGLIDADG endonuclease phrog_11023 homing endonuclease with LAGLIDADG motif DNA, RNA and nucleotide metabolism -1 42116 42601
YP_008059048.1 NC_021327_p6 hypothetical protein phrog_32627 unknown function unknown function -1 1895 2467
YP_008059202.1 NC_021327_p160 hypothetical protein singleton unknown function unknown function 1 99713 99874
YP_008059097.1 NC_021327_p55 hypothetical protein phrog_24115 unknown function unknown function -1 27536 27925
YP_008059189.1 NC_021327_p147 hypothetical protein phrog_13954 unknown function unknown function 1 96085 96348
YP_008059087.1 NC_021327_p45 RtcB phrog_1075 tRNA splicing ligase DNA, RNA and nucleotide metabolism -1 22390 23850
YP_008059159.1 NC_021327_p117 hypothetical protein phrog_23555 head maturation protease head and packaging 1 75620 77494
YP_008059166.1 NC_021327_p124 hypothetical protein phrog_21196 unknown function unknown function 1 81065 81676
YP_008059050.1 NC_021327_p8 hypothetical protein singleton unknown function unknown function -1 2806 2979
YP_008059084.1 NC_021327_p42 HNH protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 21480 21962
YP_008059151.1 NC_021327_p109 gpF-like protein singleton unknown function unknown function 1 66183 67196
YP_008059104.1 NC_021327_p62 hypothetical protein phrog_25479 unknown function unknown function -1 33140 33601
YP_008059192.1 NC_021327_p150 hypothetical protein singleton unknown function unknown function 1 96915 97352
YP_008059069.1 NC_021327_p27 hypothetical protein phrog_36547 unknown function unknown function 1 11332 11790
YP_008059046.1 NC_021327_p4 hypothetical protein phrog_35109 unknown function unknown function -1 1312 1518
YP_008059117.1 NC_021327_p75 QueC phrog_1550 QueC-like queuosine biosynthesis moron, auxiliary metabolic gene and host takeover -1 39317 40081
YP_008059137.1 NC_021327_p95 hypothetical protein phrog_9660 unknown function unknown function -1 52588 53739
YP_008059206.1 NC_021327_p164 hypothetical protein singleton unknown function unknown function -1 101287 101430
YP_008059169.1 NC_021327_p127 tail assembly chaperone phrog_35486 tail assembly chaperone tail 1 83232 83986
YP_008059045.1 NC_021327_p3 hypothetical protein phrog_26667 unknown function unknown function -1 1148 1315
YP_008059132.1 NC_021327_p90 hypothetical protein phrog_26527 unknown function unknown function -1 49987 50304
YP_008059139.1 NC_021327_p97 RadA phrog_27403 unknown function unknown function -1 54604 55101
YP_008059160.1 NC_021327_p118 major capsid protein phrog_24667 major head protein head and packaging 1 77510 78883
YP_008059193.1 NC_021327_p151 hypothetical protein phrog_26532 unknown function unknown function 1 97349 97558
YP_008059083.1 NC_021327_p41 hypothetical protein phrog_23905 unknown function unknown function -1 20906 21478
YP_008059112.1 NC_021327_p70 hypothetical protein phrog_22123 unknown function unknown function -1 37385 37513
YP_008059065.1 NC_021327_p23 hypothetical protein phrog_19679 unknown function unknown function 1 7112 7429
YP_008059105.1 NC_021327_p63 hypothetical protein phrog_25612 unknown function unknown function -1 33579 34031
YP_008059172.1 NC_021327_p130 hypothetical protein phrog_20371 unknown function unknown function 1 85427 85882
YP_008059146.1 NC_021327_p104 terminase large subunit phrog_2 terminase large subunit head and packaging 1 60594 62039
YP_008059187.1 NC_021327_p145 hypothetical protein phrog_34530 unknown function unknown function 1 95728 95919
YP_008059059.1 NC_021327_p17 hypothetical protein phrog_33212 unknown function unknown function -1 4854 5339
YP_008059073.1 NC_021327_p31 hypothetical protein phrog_22071 unknown function unknown function 1 13638 14957
YP_008059113.1 NC_021327_p71 QueE phrog_2076 QueE-like radical SAM domain moron, auxiliary metabolic gene and host takeover -1 37510 38295
YP_008059111.1 NC_021327_p69 hypothetical protein phrog_22165 unknown function unknown function -1 37213 37392
YP_008059205.1 NC_021327_p163 GIY-YIG nuclease singleton homing endonuclease with GIY-YIG motif DNA, RNA and nucleotide metabolism 1 100646 101233
YP_008059077.1 NC_021327_p35 DNA polymerase II small subunit phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 16016 17245
YP_008059088.1 NC_021327_p46 hypothetical protein singleton unknown function unknown function -1 23843 24073
YP_008059150.1 NC_021327_p108 ADP-ribosyltransferase singleton ADP-ribosyltransferase moron, auxiliary metabolic gene and host takeover 1 65222 66190
YP_008059074.1 NC_021327_p32 hypothetical protein phrog_27443 unknown function unknown function 1 15001 15504
YP_008059140.1 NC_021327_p98 hypothetical protein phrog_27930 unknown function unknown function -1 55094 56614
YP_008059114.1 NC_021327_p72 hypothetical protein phrog_28580 unknown function unknown function -1 38292 38735
YP_008059049.1 NC_021327_p7 hypothetical protein singleton unknown function unknown function 1 2543 2800
YP_008059184.1 NC_021327_p142 hypothetical protein phrog_3106 HNH endonuclease DNA, RNA and nucleotide metabolism -1 93964 94341
YP_008059170.1 NC_021327_p128 tail assembly chaperone phrog_32593 tail assembly chaperone tail 1 83232 83648
YP_008059181.1 NC_021327_p139 hypothetical protein phrog_23116 unknown function unknown function -1 92911 93267
YP_008059179.1 NC_021327_p137 hypothetical protein singleton unknown function unknown function 1 92479 92655
YP_008059091.1 NC_021327_p49 Hef and HNH endonuclease phrog_24545 HNH endonuclease DNA, RNA and nucleotide metabolism -1 25125 26303
YP_008059176.1 NC_021327_p134 hypothetical protein phrog_20556 baseplate protein tail 1 89100 90596
YP_008059154.1 NC_021327_p112 integrase phrog_216 integrase integration and excision -1 69989 70690
YP_008059171.1 NC_021327_p129 tape measure phrog_15478 tail length tape measure protein tail 1 83988 85430
YP_008059082.1 NC_021327_p40 hypothetical protein phrog_16678 unknown function unknown function -1 20163 20903
YP_008059199.1 NC_021327_p157 hypothetical protein phrog_27644 unknown function unknown function 1 99199 99390
YP_008059208.1 NC_021327_p166 hypothetical protein singleton unknown function unknown function -1 101738 101890
YP_008059072.1 NC_021327_p30 hypothetical protein phrog_25575 unknown function unknown function 1 12310 13494
YP_008059136.1 NC_021327_p94 hypothetical protein phrog_26211 unknown function unknown function -1 52134 52586
YP_008059102.1 NC_021327_p60 hypothetical protein phrog_30928 unknown function unknown function -1 31513 31701
YP_008059062.1 NC_021327_p20 hypothetical protein phrog_27877 unknown function unknown function 1 5966 6292
YP_008059103.1 NC_021327_p61 hypothetical protein phrog_249 porphyrin biosynthesis moron, auxiliary metabolic gene and host takeover -1 31729 33066
YP_008059070.1 NC_021327_p28 hypothetical protein phrog_32830 unknown function unknown function 1 11783 12055
YP_008059064.1 NC_021327_p22 HNH protein phrog_7545 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6642 7115
YP_008059190.1 NC_021327_p148 hypothetical protein phrog_18378 unknown function unknown function 1 96350 96535
YP_008059071.1 NC_021327_p29 hypothetical protein phrog_37747 unknown function unknown function 1 12057 12224
YP_008059182.1 NC_021327_p140 hypothetical protein phrog_22410 unknown function unknown function 1 93351 93539
YP_008059099.1 NC_021327_p57 hypothetical protein phrog_27711 unknown function unknown function -1 28404 28838
YP_008059055.1 NC_021327_p13 hypothetical protein phrog_34015 unknown function unknown function -1 3922 4059
YP_008059147.1 NC_021327_p105 HNH protein phrog_1271 HNH endonuclease DNA, RNA and nucleotide metabolism 1 62033 62620
YP_008059092.1 NC_021327_p50 hypothetical protein phrog_36117 unknown function unknown function -1 26300 26437
YP_008059110.1 NC_021327_p68 GTP cyclohydrolase I phrog_2197 GTP cyclohydrolase other -1 36571 37200
YP_008059089.1 NC_021327_p47 hypothetical protein singleton unknown function unknown function -1 24070 24240
YP_008059175.1 NC_021327_p133 hypothetical protein phrog_21822 unknown function unknown function 1 88094 89086
YP_008059143.1 NC_021327_p101 hypothetical protein singleton unknown function unknown function 1 58893 59141
YP_008059145.1 NC_021327_p103 HNH protein phrog_1271 HNH endonuclease DNA, RNA and nucleotide metabolism 1 60047 60604
YP_008059081.1 NC_021327_p39 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 19032 19985
YP_008059165.1 NC_021327_p123 hypothetical protein phrog_17057 unknown function unknown function 1 80385 81065
YP_008059168.1 NC_021327_p126 tail tube phrog_290 minor tail protein tail 1 82164 83177
YP_008059079.1 NC_021327_p37 hypothetical protein phrog_420 unknown function unknown function -1 17690 18271
YP_008059163.1 NC_021327_p121 hypothetical protein phrog_23144 unknown function unknown function 1 79637 80050
YP_008059120.1 NC_021327_p78 hypothetical protein phrog_35988 unknown function unknown function -1 41050 41265
YP_008059178.1 NC_021327_p136 hypothetical protein singleton unknown function unknown function 1 91710 92423
YP_008059191.1 NC_021327_p149 hypothetical protein phrog_36937 unknown function unknown function 1 96532 96918
YP_008059183.1 NC_021327_p141 RNase HI phrog_22885 Rnase H DNA, RNA and nucleotide metabolism 1 93536 93967
YP_008059086.1 NC_021327_p44 hypothetical protein singleton unknown function unknown function -1 22250 22393
YP_008059051.1 NC_021327_p9 hypothetical protein phrog_37701 unknown function unknown function -1 3022 3282
YP_008059144.1 NC_021327_p102 hypothetical protein phrog_26615 unknown function unknown function 1 59388 60050
YP_008059177.1 NC_021327_p135 hypothetical protein phrog_18503 unknown function unknown function 1 90599 91708
YP_008059207.1 NC_021327_p165 hypothetical protein singleton unknown function unknown function -1 101427 101741
YP_008059118.1 NC_021327_p76 HNH protein phrog_7545 HNH endonuclease DNA, RNA and nucleotide metabolism -1 40139 40621
YP_008059076.1 NC_021327_p34 hypothetical protein phrog_25632 unknown function unknown function 1 15644 15898
YP_008059068.1 NC_021327_p26 hypothetical protein singleton unknown function unknown function 1 10861 11298
YP_008059058.1 NC_021327_p16 hypothetical protein singleton unknown function unknown function -1 4756 4857
YP_008059162.1 NC_021327_p120 hypothetical protein phrog_26402 unknown function unknown function 1 79298 79630
YP_008059080.1 NC_021327_p38 hypothetical protein phrog_29037 endonuclease DNA, RNA and nucleotide metabolism -1 18268 18993
YP_008059195.1 NC_021327_p153 hypothetical protein phrog_2470 membrane protein moron, auxiliary metabolic gene and host takeover 1 98298 98627
YP_008059130.1 NC_021327_p88 HNH protein phrog_1271 HNH endonuclease DNA, RNA and nucleotide metabolism -1 48586 49197
YP_008059157.1 NC_021327_p115 hypothetical protein singleton unknown function unknown function -1 75365 75532
YP_008059109.1 NC_021327_p67 hypothetical protein phrog_23010 unknown function unknown function -1 35454 36569