Genomic map of Halovirus HCTV-1 (NC_021330)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021330
Definition
Halovirus HCTV-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; unclassified viruses; unclassified DNA viruses; unclassified archaeal dsDNA viruses; Haloviruses.
DB of origin
REFSEQ
Length
103257
Host Name
Haloarcula californiae
Host domain
Archaea
Is prophage?
undef
Number of proteins
160
%GC
56.95
Number of singletons
61
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008059632.1 NC_021330_p70 hypothetical protein phrog_28580 unknown function unknown function -1 39924 40367
YP_008059714.1 NC_021330_p152 hypothetical protein phrog_25102 unknown function unknown function 1 100951 101166
YP_008059619.1 NC_021330_p57 hypothetical protein phrog_25479 unknown function unknown function -1 32333 32782
YP_008059585.1 NC_021330_p23 hypothetical protein singleton unknown function unknown function 1 6722 6934
YP_008059700.1 NC_021330_p138 hypothetical protein singleton unknown function unknown function 1 97077 97451
YP_008059682.1 NC_021330_p120 hypothetical protein phrog_18409 minor tail protein tail 1 81834 82814
YP_008059575.1 NC_021330_p13 hypothetical protein phrog_26667 unknown function unknown function -1 3961 4158
YP_008059592.1 NC_021330_p30 hypothetical protein phrog_22071 unknown function unknown function 1 13114 14388
YP_008059617.1 NC_021330_p55 hypothetical protein phrog_23795 unknown function unknown function -1 28638 30827
YP_008059589.1 NC_021330_p27 hypothetical protein phrog_36547 unknown function unknown function 1 10799 11338
YP_008059572.1 NC_021330_p10 hypothetical protein singleton unknown function unknown function -1 3154 3480
YP_008059599.1 NC_021330_p37 hypothetical protein singleton unknown function unknown function -1 17634 17843
YP_008059717.1 NC_021330_p155 hypothetical protein singleton unknown function unknown function 1 101437 101691
YP_008059568.1 NC_021330_p6 hypothetical protein phrog_8677 unknown function unknown function -1 2182 2445
YP_008059713.1 NC_021330_p151 hypothetical protein singleton unknown function unknown function 1 100802 100954
YP_008059624.1 NC_021330_p62 hypothetical protein phrog_34487 unknown function unknown function -1 35319 35534
YP_008059679.1 NC_021330_p117 hypothetical protein singleton unknown function unknown function 1 80510 81058
YP_008059574.1 NC_021330_p12 hypothetical protein phrog_37701 unknown function unknown function -1 3714 3968
YP_008059613.1 NC_021330_p51 hypothetical protein phrog_25017 unknown function unknown function -1 26862 27119
YP_008059710.1 NC_021330_p148 hypothetical protein singleton unknown function unknown function 1 100251 100394
YP_008059573.1 NC_021330_p11 hypothetical protein singleton unknown function unknown function -1 3532 3717
YP_008059596.1 NC_021330_p34 DNA polymerase II small subunit phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 15397 16626
YP_008059680.1 NC_021330_p118 hypothetical protein singleton unknown function unknown function 1 81055 81543
YP_008059640.1 NC_021330_p78 hypothetical protein singleton unknown function unknown function -1 44218 44463
YP_008059586.1 NC_021330_p24 hypothetical protein phrog_19679 unknown function unknown function 1 7047 7421
YP_008059582.1 NC_021330_p20 hypothetical protein singleton unknown function unknown function -1 5945 6142
YP_008059703.1 NC_021330_p141 hypothetical protein phrog_33428 unknown function unknown function 1 97815 98291
YP_008059705.1 NC_021330_p143 hypothetical protein singleton unknown function unknown function 1 98524 99066
YP_008059600.1 NC_021330_p38 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 17854 18603
YP_008059678.1 NC_021330_p116 hypothetical protein phrog_17057 unknown function unknown function 1 79839 80510
YP_008059609.1 NC_021330_p47 RtcB phrog_1075 tRNA splicing ligase DNA, RNA and nucleotide metabolism -1 24321 25772
YP_008059595.1 NC_021330_p33 hypothetical protein phrog_25632 unknown function unknown function 1 15070 15312
YP_008059661.1 NC_021330_p99 RadA phrog_8337 DNA repair protein DNA, RNA and nucleotide metabolism 1 59230 60141
YP_008059669.1 NC_021330_p107 gpF-like protein singleton unknown function unknown function 1 69991 70881
YP_008059618.1 NC_021330_p56 hypothetical protein phrog_249 porphyrin biosynthesis moron, auxiliary metabolic gene and host takeover -1 30920 32257
YP_008059708.1 NC_021330_p146 hypothetical protein singleton unknown function unknown function 1 100005 100139
YP_008059642.1 NC_021330_p80 hypothetical protein singleton unknown function unknown function -1 44938 45138
YP_008059565.1 NC_021330_p3 hypothetical protein singleton unknown function unknown function -1 1267 1512
YP_008059636.1 NC_021330_p74 hypothetical protein phrog_27747 unknown function unknown function -1 41785 42189
YP_008059687.1 NC_021330_p125 tape measure singleton tail length tape measure protein tail 1 84476 86338
YP_008059693.1 NC_021330_p131 hypothetical protein singleton unknown function unknown function -1 94324 94581
YP_008059702.1 NC_021330_p140 hypothetical protein phrog_18378 unknown function unknown function 1 97618 97812
YP_008059570.1 NC_021330_p8 hypothetical protein singleton unknown function unknown function -1 2690 3052
YP_008059623.1 NC_021330_p61 hypothetical protein phrog_29634 unknown function unknown function 1 34617 35315
YP_008059601.1 NC_021330_p39 hypothetical protein phrog_17792 unknown function unknown function 1 18734 19180
YP_008059563.1 NC_021330_p1 hypothetical protein phrog_30207 unknown function unknown function 1 120 464
YP_008059670.1 NC_021330_p108 zeta toxin domain protein phrog_24083 unknown function unknown function 1 70928 74560
YP_008059566.1 NC_021330_p4 hypothetical protein singleton unknown function unknown function -1 1502 1765
YP_008059666.1 NC_021330_p104 portal protein phrog_18178 portal protein head and packaging 1 62969 64837
YP_008059644.1 NC_021330_p82 hypothetical protein singleton unknown function unknown function -1 46366 46527
YP_008059648.1 NC_021330_p86 PD-(D/E)XK nuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 50068 50865
YP_008059616.1 NC_021330_p54 hypothetical protein phrog_27711 unknown function unknown function -1 27958 28383
YP_008059685.1 NC_021330_p123 hypothetical protein singleton unknown function unknown function 1 83537 83677
YP_008059660.1 NC_021330_p98 hypothetical protein phrog_24900 unknown function unknown function -1 57954 59045
YP_008059686.1 NC_021330_p124 hypothetical protein singleton unknown function unknown function 1 83677 84474
YP_008059610.1 NC_021330_p48 Hef nuclease phrog_24545 HNH endonuclease DNA, RNA and nucleotide metabolism -1 25769 26458
YP_008059615.1 NC_021330_p53 hypothetical protein phrog_24115 unknown function unknown function -1 27570 27956
YP_008059646.1 NC_021330_p84 DNA polymerase elongation subunit (family B) phrog_262 DNA polymerase DNA, RNA and nucleotide metabolism -1 47021 49747
YP_008059663.1 NC_021330_p101 hypothetical protein singleton unknown function unknown function -1 60297 60557
YP_008059649.1 NC_021330_p87 hypothetical protein phrog_26527 unknown function unknown function -1 50862 51173
YP_008059597.1 NC_021330_p35 hypothetical protein singleton unknown function unknown function 1 16632 17000
YP_008059628.1 NC_021330_p66 hypothetical protein phrog_22165 unknown function unknown function -1 38208 38372
YP_008059622.1 NC_021330_p60 hypothetical protein phrog_27319 unknown function unknown function -1 33698 34357
YP_008059650.1 NC_021330_p88 hypothetical protein phrog_23435 unknown function unknown function -1 51177 51380
YP_008059656.1 NC_021330_p94 hypothetical protein phrog_9660 unknown function unknown function -1 53939 55090
YP_008059674.1 NC_021330_p112 hypothetical protein phrog_26555 unknown function unknown function 1 78361 78738
YP_008059614.1 NC_021330_p52 hypothetical protein phrog_22920 unknown function unknown function -1 27116 27577
YP_008059593.1 NC_021330_p31 hypothetical protein phrog_27443 unknown function unknown function 1 14526 14936
YP_008059698.1 NC_021330_p136 hypothetical protein phrog_22070 unknown function unknown function 1 96577 96801
YP_008059576.1 NC_021330_p14 hypothetical protein phrog_33212 unknown function unknown function -1 4158 4643
YP_008059633.1 NC_021330_p71 hypothetical protein singleton unknown function unknown function -1 40360 40515
YP_008059709.1 NC_021330_p147 hypothetical protein singleton unknown function unknown function 1 100132 100254
YP_008059696.1 NC_021330_p134 hypothetical protein phrog_24869 unknown function unknown function 1 95481 96335
YP_008059602.1 NC_021330_p40 hypothetical protein singleton unknown function unknown function 1 19192 20409
YP_008059612.1 NC_021330_p50 hypothetical protein phrog_26288 unknown function unknown function -1 26603 26869
YP_008059707.1 NC_021330_p145 trimeric dUTPase phrog_1663 dCTP deaminase DNA, RNA and nucleotide metabolism -1 99257 99904
YP_008059684.1 NC_021330_p122 tail assembly chaperone singleton tail assembly chaperone tail 1 82817 83386
YP_008059607.1 NC_021330_p45 hypothetical protein phrog_23905 unknown function unknown function -1 23429 24010
YP_008059692.1 NC_021330_p130 hypothetical protein singleton unknown function unknown function -1 93678 94103
YP_008059606.1 NC_021330_p44 hypothetical protein singleton unknown function unknown function -1 23242 23436
YP_008059701.1 NC_021330_p139 hypothetical protein singleton unknown function unknown function 1 97448 97621
YP_008059691.1 NC_021330_p129 hypothetical protein singleton unknown function unknown function 1 92891 93703
YP_008059591.1 NC_021330_p29 hypothetical protein phrog_25575 unknown function unknown function 1 11824 13005
YP_008059722.1 NC_021330_p160 hypothetical protein phrog_30207 unknown function unknown function 1 102662 102982
YP_008059652.1 NC_021330_p90 hypothetical protein phrog_36299 unknown function unknown function -1 52436 52621
YP_008059718.1 NC_021330_p156 hypothetical protein singleton unknown function unknown function 1 101684 101869
YP_008059643.1 NC_021330_p81 replication factor C large subunit phrog_11838 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism -1 45107 46369
YP_008059620.1 NC_021330_p58 hypothetical protein phrog_25612 unknown function unknown function -1 32760 33179
YP_008059625.1 NC_021330_p63 hypothetical protein phrog_23010 unknown function unknown function -1 35642 36805
YP_008059603.1 NC_021330_p41 hypothetical protein singleton unknown function unknown function 1 20411 21961
YP_008059590.1 NC_021330_p28 hypothetical protein singleton unknown function unknown function 1 11335 11721
YP_008059655.1 NC_021330_p93 hypothetical protein phrog_26211 unknown function unknown function -1 53428 53904
YP_008059580.1 NC_021330_p18 hypothetical protein phrog_23249 unknown function unknown function -1 5466 5717
YP_008059711.1 NC_021330_p149 hypothetical protein singleton unknown function unknown function 1 100391 100618
YP_008059577.1 NC_021330_p15 hypothetical protein phrog_14974 unknown function unknown function -1 4732 5013
YP_008059587.1 NC_021330_p25 hypothetical protein phrog_24432 unknown function unknown function 1 7418 7810
YP_008059704.1 NC_021330_p142 hypothetical protein singleton unknown function unknown function 1 98288 98527
YP_008059690.1 NC_021330_p128 hypothetical protein phrog_4175 poly-gamma-glutamate hydrolase other 1 89757 92894
YP_008059668.1 NC_021330_p106 hypothetical protein singleton unknown function unknown function 1 67967 69994
YP_008059695.1 NC_021330_p133 RNAse HI phrog_22885 Rnase H DNA, RNA and nucleotide metabolism 1 94808 95239
YP_008059598.1 NC_021330_p36 hypothetical protein phrog_420 unknown function unknown function -1 17041 17637
YP_008059578.1 NC_021330_p16 hypothetical protein phrog_28572 unknown function unknown function -1 5080 5217
YP_008059638.1 NC_021330_p76 hypothetical protein singleton unknown function unknown function -1 42735 43859
YP_008059699.1 NC_021330_p137 hypothetical protein singleton unknown function unknown function 1 96858 96965
YP_008059641.1 NC_021330_p79 hypothetical protein phrog_31282 unknown function unknown function -1 44456 44935
YP_008059689.1 NC_021330_p127 hypothetical protein singleton unknown function unknown function 1 88438 89757
YP_008059635.1 NC_021330_p73 QueC phrog_1550 QueC-like queuosine biosynthesis moron, auxiliary metabolic gene and host takeover -1 40959 41726
YP_008059665.1 NC_021330_p103 terminase large subunit phrog_2 terminase large subunit head and packaging 1 61514 62962
YP_008059594.1 NC_021330_p32 hypothetical protein phrog_24962 unknown function unknown function 1 14936 15073
YP_008059608.1 NC_021330_p46 hypothetical protein phrog_3301 pyrophosphatase other -1 24013 24324
YP_008059712.1 NC_021330_p150 hypothetical protein phrog_27644 unknown function unknown function 1 100615 100812
YP_008059673.1 NC_021330_p111 major capsid protein phrog_24667 major head protein head and packaging 1 76960 78342
YP_008059637.1 NC_021330_p75 QueF phrog_5949 GTP cyclohydrolase other -1 42186 42647
YP_008059654.1 NC_021330_p92 TMP kinase phrog_761 thymidylate kinase other -1 52835 53425
YP_008059588.1 NC_021330_p26 ribonucleotide reductase phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 7803 10751
YP_008059658.1 NC_021330_p96 RadA phrog_27403 unknown function unknown function -1 55962 56474
YP_008059581.1 NC_021330_p19 hypothetical protein singleton unknown function unknown function -1 5710 5952
YP_008059697.1 NC_021330_p135 hypothetical protein phrog_34761 unknown function unknown function 1 96335 96580
YP_008059645.1 NC_021330_p83 hypothetical protein phrog_23962 unknown function unknown function -1 46530 47027
YP_008059694.1 NC_021330_p132 hypothetical protein phrog_22410 unknown function unknown function 1 94650 94811
YP_008059720.1 NC_021330_p158 hypothetical protein singleton unknown function unknown function 1 101980 102105
YP_008059605.1 NC_021330_p43 hypothetical protein phrog_16678 unknown function unknown function -1 22500 23240
YP_008059719.1 NC_021330_p157 hypothetical protein singleton unknown function unknown function 1 101859 101993
YP_008059706.1 NC_021330_p144 hypothetical protein phrog_26532 unknown function unknown function 1 99063 99266
YP_008059664.1 NC_021330_p102 hypothetical protein phrog_26615 unknown function unknown function 1 60816 61517
YP_008059584.1 NC_021330_p22 hypothetical protein phrog_27877 unknown function unknown function 1 6409 6738
YP_008059621.1 NC_021330_p59 hypothetical protein phrog_26694 unknown function unknown function -1 33181 33642
YP_008059579.1 NC_021330_p17 hypothetical protein singleton unknown function unknown function -1 5210 5398
YP_008059629.1 NC_021330_p67 hypothetical protein phrog_22123 unknown function unknown function -1 38362 38484
YP_008059627.1 NC_021330_p65 hypothetical protein phrog_4899 unknown function unknown function -1 37446 38141
YP_008059630.1 NC_021330_p68 QueE phrog_2076 QueE-like radical SAM domain moron, auxiliary metabolic gene and host takeover -1 38486 39274
YP_008059653.1 NC_021330_p91 hypothetical protein singleton unknown function unknown function -1 52618 52842
YP_008059676.1 NC_021330_p114 hypothetical protein phrog_23144 unknown function unknown function 1 79065 79508
YP_008059677.1 NC_021330_p115 hypothetical protein phrog_24068 unknown function unknown function 1 79510 79839
YP_008059639.1 NC_021330_p77 hypothetical protein singleton unknown function unknown function -1 43923 44129
YP_008059634.1 NC_021330_p72 QueD phrog_2389 QueD-like 6-pyruvoyl-tetrahydropterin synthase moron, auxiliary metabolic gene and host takeover -1 40508 40966
YP_008059571.1 NC_021330_p9 hypothetical protein singleton unknown function unknown function -1 3045 3161
YP_008059716.1 NC_021330_p154 hypothetical protein singleton unknown function unknown function 1 101301 101444
YP_008059671.1 NC_021330_p109 hypothetical protein phrog_27094 unknown function unknown function 1 74790 74951
YP_008059675.1 NC_021330_p113 hypothetical protein phrog_26402 unknown function unknown function 1 78756 79058
YP_008059681.1 NC_021330_p119 hypothetical protein singleton unknown function unknown function 1 81540 81785
YP_008059688.1 NC_021330_p126 hypothetical protein singleton unknown function unknown function 1 86338 88431
YP_008059672.1 NC_021330_p110 hypothetical protein phrog_23555 head maturation protease head and packaging 1 74951 76948
YP_008059647.1 NC_021330_p85 hypothetical protein phrog_8048 HNH endonuclease DNA, RNA and nucleotide metabolism -1 49769 50065
YP_008059564.1 NC_021330_p2 hypothetical protein singleton unknown function unknown function -1 891 1283
YP_008059604.1 NC_021330_p42 hypothetical protein singleton unknown function unknown function 1 21963 22373
YP_008059721.1 NC_021330_p159 hypothetical protein singleton unknown function unknown function 1 102089 102250
YP_008059659.1 NC_021330_p97 hypothetical protein phrog_27930 unknown function unknown function -1 56467 57951
YP_008059651.1 NC_021330_p89 replication factor C small subunit phrog_168 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism -1 51380 52408
YP_008059631.1 NC_021330_p69 HNH protein phrog_1271 HNH endonuclease DNA, RNA and nucleotide metabolism -1 39271 39927
YP_008059657.1 NC_021330_p95 hypothetical protein phrog_25687 unknown function unknown function -1 55112 55969
YP_008059569.1 NC_021330_p7 hypothetical protein singleton unknown function unknown function -1 2445 2690
YP_008059567.1 NC_021330_p5 hypothetical protein singleton unknown function unknown function -1 1808 2116
YP_008059715.1 NC_021330_p153 hypothetical protein phrog_22958 unknown function unknown function 1 101156 101311
YP_008059662.1 NC_021330_p100 hypothetical protein singleton unknown function unknown function -1 60145 60297
YP_008059683.1 NC_021330_p121 tail assembly chaperone singleton unknown function unknown function 1 82817 83544
YP_008059611.1 NC_021330_p49 hypothetical protein phrog_14974 unknown function unknown function -1 26455 26610
YP_008059667.1 NC_021330_p105 hypothetical protein phrog_32688 unknown function unknown function 1 64830 67970
YP_008059583.1 NC_021330_p21 hypothetical protein singleton unknown function unknown function -1 6139 6333
YP_008059626.1 NC_021330_p64 GTP cyclohydrolase I phrog_2197 GTP cyclohydrolase other -1 36807 37433