Genomic map of Shigella phage pSf-1 (NC_021331)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021331
Definition
Shigella phage pSf-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tempevirinae; Hanrivervirus; Shigella virus pSf1.
DB of origin
REFSEQ
Length
51821
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
94
%GC
44.02
Number of singletons
26
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008059804.1 NC_021331_p82 protein of an unannotated phage phrog_31 central tail fiber J tail 1 41091 44543
YP_008059757.1 NC_021331_p35 protein of an unannotated phage phrog_31863 unknown function unknown function 1 17446 17694
YP_008059727.1 NC_021331_p5 protein of an unannotated phage phrog_824 unknown function unknown function 1 4890 5309
YP_008059778.1 NC_021331_p56 protein of an unannotated phage phrog_303 unknown function unknown function 1 23985 24215
YP_008059742.1 NC_021331_p20 protein of an unannotated phage phrog_2684 unknown function unknown function -1 12488 12874
YP_008059776.1 NC_021331_p54 protein of an unannotated phage phrog_11097 unknown function unknown function 1 23523 23771
YP_008059779.1 NC_021331_p57 protein of an unannotated phage singleton unknown function unknown function 1 24293 24595
YP_008059781.1 NC_021331_p59 protein of an unannotated phage singleton unknown function unknown function 1 24734 24973
YP_008059770.1 NC_021331_p48 protein of an unannotated phage singleton unknown function unknown function 1 21970 22371
YP_008059752.1 NC_021331_p30 protein of an unannotated phage singleton unknown function unknown function -1 15785 16030
YP_008059805.1 NC_021331_p83 protein of an unannotated phage phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover -1 44570 45526
YP_008059739.1 NC_021331_p17 protein of an unannotated phage phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 10103 10615
YP_008059777.1 NC_021331_p55 protein of an unannotated phage phrog_1312 unknown function unknown function 1 23857 23985
YP_008059815.1 NC_021331_p93 protein of an unannotated phage singleton unknown function unknown function -1 50899 51585
YP_008059774.1 NC_021331_p52 protein of an unannotated phage phrog_8758 unknown function unknown function 1 22951 23238
YP_008059761.1 NC_021331_p39 protein of an unannotated phage phrog_5579 unknown function unknown function 1 19232 19384
YP_008059737.1 NC_021331_p15 protein of an unannotated phage singleton unknown function unknown function -1 9585 9698
YP_008059748.1 NC_021331_p26 protein of an unannotated phage phrog_7421 unknown function unknown function -1 14729 14923
YP_008059814.1 NC_021331_p92 protein of an unannotated phage phrog_9288 unknown function unknown function -1 50018 50719
YP_008059758.1 NC_021331_p36 protein of an unannotated phage phrog_7717 unknown function unknown function 1 17777 17962
YP_008059775.1 NC_021331_p53 protein of an unannotated phage phrog_5684 unknown function unknown function 1 23314 23526
YP_008059796.1 NC_021331_p74 protein of an unannotated phage phrog_584 major tail protein tail 1 34424 35086
YP_008059813.1 NC_021331_p91 protein of an unannotated phage phrog_9157 unknown function unknown function -1 49645 49968
YP_008059766.1 NC_021331_p44 protein of an unannotated phage singleton unknown function unknown function 1 20762 20932
YP_008059786.1 NC_021331_p64 protein of an unannotated phage phrog_324 head morphogenesis head and packaging 1 28490 29254
YP_008059782.1 NC_021331_p60 protein of an unannotated phage singleton unknown function unknown function 1 25054 25524
YP_008059736.1 NC_021331_p14 protein of an unannotated phage phrog_10679 unknown function unknown function -1 9291 9512
YP_008059769.1 NC_021331_p47 protein of an unannotated phage phrog_139 deoxynucleoside monophosphate kinase other 1 21309 21899
YP_008059816.1 NC_021331_p94 protein of an unannotated phage singleton unknown function unknown function -1 51578 51796
YP_008059733.1 NC_021331_p11 protein of an unannotated phage phrog_2877 holin lysis 1 8174 8389
YP_008059771.1 NC_021331_p49 protein of an unannotated phage singleton unknown function unknown function 1 22358 22489
YP_008059788.1 NC_021331_p66 protein of an unannotated phage phrog_1989 unknown function unknown function 1 30383 30895
YP_008059808.1 NC_021331_p86 protein of an unannotated phage phrog_11265 tail length tape measure protein tail 1 47403 47681
YP_008059791.1 NC_021331_p69 protein of an unannotated phage phrog_2716 unknown function unknown function 1 32490 32762
YP_008059795.1 NC_021331_p73 protein of an unannotated phage phrog_179 tail terminator connector 1 34020 34418
YP_008059783.1 NC_021331_p61 protein of an unannotated phage phrog_38 terminase large subunit head and packaging 1 25574 27142
YP_008059723.1 NC_021331_p1 protein of an unannotated phage phrog_510 DNA primase DNA, RNA and nucleotide metabolism -1 1308 2240
YP_008059767.1 NC_021331_p45 protein of an unannotated phage phrog_9755 unknown function unknown function 1 20929 21114
YP_008059754.1 NC_021331_p32 protein of an unannotated phage singleton unknown function unknown function 1 16506 16631
YP_008059806.1 NC_021331_p84 protein of an unannotated phage phrog_4281 unknown function unknown function -1 45529 45759
YP_008059729.1 NC_021331_p7 protein of an unannotated phage phrog_2676 unknown function unknown function 1 6090 6329
YP_008059725.1 NC_021331_p3 protein of an unannotated phage phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 2859 4541
YP_008059728.1 NC_021331_p6 protein of an unannotated phage phrog_111 DNA methyltransferase other 1 5384 6085
YP_008059803.1 NC_021331_p81 protein of an unannotated phage phrog_32 tail assembly protein tail 1 40477 41010
YP_008059793.1 NC_021331_p71 protein of an unannotated phage phrog_161 head closure Hc1 connector 1 33223 33594
YP_008059740.1 NC_021331_p18 protein of an unannotated phage phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism -1 10620 12203
YP_008059799.1 NC_021331_p77 protein of an unannotated phage phrog_24 tail length tape measure protein tail 1 35854 38526
YP_008059731.1 NC_021331_p9 protein of an unannotated phage phrog_2817 unknown function unknown function 1 6571 6813
YP_008059784.1 NC_021331_p62 protein of an unannotated phage phrog_15615 virion structural protein head and packaging 1 27211 27984
YP_008059763.1 NC_021331_p41 protein of an unannotated phage singleton unknown function unknown function 1 19671 19892
YP_008059807.1 NC_021331_p85 protein of an unannotated phage phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 46260 47321
YP_008059755.1 NC_021331_p33 protein of an unannotated phage singleton unknown function unknown function 1 16975 17292
YP_008059750.1 NC_021331_p28 protein of an unannotated phage phrog_4653 unknown function unknown function -1 15275 15427
YP_008059811.1 NC_021331_p89 protein of an unannotated phage phrog_7239 unknown function unknown function -1 48895 49152
YP_008059762.1 NC_021331_p40 protein of an unannotated phage singleton unknown function unknown function 1 19454 19684
YP_008059743.1 NC_021331_p21 protein of an unannotated phage singleton unknown function unknown function -1 13005 13655
YP_008059738.1 NC_021331_p16 protein of an unannotated phage phrog_2794 unknown function unknown function -1 9706 10098
YP_008059760.1 NC_021331_p38 protein of an unannotated phage phrog_7116 unknown function unknown function 1 18262 19155
YP_008059745.1 NC_021331_p23 protein of an unannotated phage singleton unknown function unknown function -1 13885 13998
YP_008059732.1 NC_021331_p10 protein of an unannotated phage phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 6912 8027
YP_008059724.1 NC_021331_p2 protein of an unannotated phage phrog_2856 transcriptional regulator transcription regulation -1 2296 2769
YP_008059790.1 NC_021331_p68 protein of an unannotated phage phrog_264 major head protein head and packaging 1 31458 32432
YP_008059749.1 NC_021331_p27 protein of an unannotated phage phrog_1972 unknown function unknown function -1 14995 15285
YP_008059768.1 NC_021331_p46 protein of an unannotated phage singleton unknown function unknown function 1 21170 21334
YP_008059809.1 NC_021331_p87 protein of an unannotated phage phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 47727 48383
YP_008059802.1 NC_021331_p80 protein of an unannotated phage phrog_30 minor tail protein tail 1 39702 40433
YP_008059759.1 NC_021331_p37 protein of an unannotated phage phrog_3623 unknown function unknown function 1 17978 18163
YP_008059812.1 NC_021331_p90 protein of an unannotated phage phrog_8329 unknown function unknown function -1 49139 49630
YP_008059756.1 NC_021331_p34 protein of an unannotated phage singleton unknown function unknown function 1 17322 17444
YP_008059730.1 NC_021331_p8 protein of an unannotated phage phrog_2180 unknown function unknown function 1 6402 6581
YP_008059751.1 NC_021331_p29 protein of an unannotated phage singleton unknown function unknown function -1 15505 15771
YP_008059780.1 NC_021331_p58 protein of an unannotated phage phrog_2919 unknown function unknown function 1 24585 24737
YP_008059746.1 NC_021331_p24 protein of an unannotated phage phrog_4344 unknown function unknown function -1 14046 14273
YP_008059789.1 NC_021331_p67 protein of an unannotated phage phrog_1989 unknown function unknown function 1 30985 31374
YP_008059765.1 NC_021331_p43 protein of an unannotated phage singleton unknown function unknown function 1 20440 20601
YP_008059772.1 NC_021331_p50 protein of an unannotated phage singleton unknown function unknown function 1 22471 22734
YP_008059810.1 NC_021331_p88 protein of an unannotated phage phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 48428 48880
YP_008059794.1 NC_021331_p72 protein of an unannotated phage phrog_169 tail completion or Neck1 protein connector 1 33587 34030
YP_008059787.1 NC_021331_p65 protein of an unannotated phage phrog_530 head maturation protease head and packaging 1 29258 30370
YP_008059785.1 NC_021331_p63 protein of an unannotated phage singleton unknown function unknown function 1 28074 28490
YP_008059798.1 NC_021331_p76 protein of an unannotated phage phrog_680 tail length tape measure protein tail 1 35623 35814
YP_008059792.1 NC_021331_p70 protein of an unannotated phage phrog_302 virion structural protein head and packaging 1 32810 33226
YP_008059753.1 NC_021331_p31 protein of an unannotated phage phrog_6147 unknown function unknown function -1 16027 16299
YP_008059747.1 NC_021331_p25 protein of an unannotated phage singleton unknown function unknown function -1 14448 14729
YP_008059797.1 NC_021331_p75 protein of an unannotated phage phrog_569 tail length tape measure protein tail 1 35186 35503
YP_008059773.1 NC_021331_p51 protein of an unannotated phage singleton unknown function unknown function 1 22731 22907
YP_008059726.1 NC_021331_p4 protein of an unannotated phage singleton unknown function unknown function 1 4538 4903
YP_008059801.1 NC_021331_p79 protein of an unannotated phage phrog_18 minor tail protein tail 1 38941 39702
YP_008059744.1 NC_021331_p22 protein of an unannotated phage phrog_9323 unknown function unknown function -1 13640 13888
YP_008059741.1 NC_021331_p19 protein of an unannotated phage singleton unknown function unknown function -1 12271 12402
YP_008059734.1 NC_021331_p12 protein of an unannotated phage phrog_7 endolysin lysis 1 8389 8877
YP_008059800.1 NC_021331_p78 protein of an unannotated phage phrog_14 minor tail protein tail 1 38529 38879
YP_008059764.1 NC_021331_p42 protein of an unannotated phage phrog_415 polynucleotide kinase other 1 19904 20443
YP_008059735.1 NC_021331_p13 protein of an unannotated phage phrog_1804 Rz-like spanin lysis 1 8880 9296