| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021331 |
Definition |
Shigella phage pSf-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tempevirinae; Hanrivervirus; Shigella virus pSf1. |
DB of origin |
REFSEQ |
Length |
51821 |
Host Name |
Shigella flexneri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
44.02 |
Number of singletons |
26 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008059804.1 | NC_021331_p82 | protein of an unannotated phage | phrog_31 | central tail fiber J | tail | 1 | 41091 | 44543 |
| YP_008059757.1 | NC_021331_p35 | protein of an unannotated phage | phrog_31863 | unknown function | unknown function | 1 | 17446 | 17694 |
| YP_008059727.1 | NC_021331_p5 | protein of an unannotated phage | phrog_824 | unknown function | unknown function | 1 | 4890 | 5309 |
| YP_008059778.1 | NC_021331_p56 | protein of an unannotated phage | phrog_303 | unknown function | unknown function | 1 | 23985 | 24215 |
| YP_008059742.1 | NC_021331_p20 | protein of an unannotated phage | phrog_2684 | unknown function | unknown function | -1 | 12488 | 12874 |
| YP_008059776.1 | NC_021331_p54 | protein of an unannotated phage | phrog_11097 | unknown function | unknown function | 1 | 23523 | 23771 |
| YP_008059779.1 | NC_021331_p57 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 24293 | 24595 |
| YP_008059781.1 | NC_021331_p59 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 24734 | 24973 |
| YP_008059770.1 | NC_021331_p48 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 21970 | 22371 |
| YP_008059752.1 | NC_021331_p30 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 15785 | 16030 |
| YP_008059805.1 | NC_021331_p83 | protein of an unannotated phage | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 44570 | 45526 |
| YP_008059739.1 | NC_021331_p17 | protein of an unannotated phage | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 10103 | 10615 |
| YP_008059777.1 | NC_021331_p55 | protein of an unannotated phage | phrog_1312 | unknown function | unknown function | 1 | 23857 | 23985 |
| YP_008059815.1 | NC_021331_p93 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 50899 | 51585 |
| YP_008059774.1 | NC_021331_p52 | protein of an unannotated phage | phrog_8758 | unknown function | unknown function | 1 | 22951 | 23238 |
| YP_008059761.1 | NC_021331_p39 | protein of an unannotated phage | phrog_5579 | unknown function | unknown function | 1 | 19232 | 19384 |
| YP_008059737.1 | NC_021331_p15 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 9585 | 9698 |
| YP_008059748.1 | NC_021331_p26 | protein of an unannotated phage | phrog_7421 | unknown function | unknown function | -1 | 14729 | 14923 |
| YP_008059814.1 | NC_021331_p92 | protein of an unannotated phage | phrog_9288 | unknown function | unknown function | -1 | 50018 | 50719 |
| YP_008059758.1 | NC_021331_p36 | protein of an unannotated phage | phrog_7717 | unknown function | unknown function | 1 | 17777 | 17962 |
| YP_008059775.1 | NC_021331_p53 | protein of an unannotated phage | phrog_5684 | unknown function | unknown function | 1 | 23314 | 23526 |
| YP_008059796.1 | NC_021331_p74 | protein of an unannotated phage | phrog_584 | major tail protein | tail | 1 | 34424 | 35086 |
| YP_008059813.1 | NC_021331_p91 | protein of an unannotated phage | phrog_9157 | unknown function | unknown function | -1 | 49645 | 49968 |
| YP_008059766.1 | NC_021331_p44 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 20762 | 20932 |
| YP_008059786.1 | NC_021331_p64 | protein of an unannotated phage | phrog_324 | head morphogenesis | head and packaging | 1 | 28490 | 29254 |
| YP_008059782.1 | NC_021331_p60 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 25054 | 25524 |
| YP_008059736.1 | NC_021331_p14 | protein of an unannotated phage | phrog_10679 | unknown function | unknown function | -1 | 9291 | 9512 |
| YP_008059769.1 | NC_021331_p47 | protein of an unannotated phage | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 21309 | 21899 |
| YP_008059816.1 | NC_021331_p94 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 51578 | 51796 |
| YP_008059733.1 | NC_021331_p11 | protein of an unannotated phage | phrog_2877 | holin | lysis | 1 | 8174 | 8389 |
| YP_008059771.1 | NC_021331_p49 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 22358 | 22489 |
| YP_008059788.1 | NC_021331_p66 | protein of an unannotated phage | phrog_1989 | unknown function | unknown function | 1 | 30383 | 30895 |
| YP_008059808.1 | NC_021331_p86 | protein of an unannotated phage | phrog_11265 | tail length tape measure protein | tail | 1 | 47403 | 47681 |
| YP_008059791.1 | NC_021331_p69 | protein of an unannotated phage | phrog_2716 | unknown function | unknown function | 1 | 32490 | 32762 |
| YP_008059795.1 | NC_021331_p73 | protein of an unannotated phage | phrog_179 | tail terminator | connector | 1 | 34020 | 34418 |
| YP_008059783.1 | NC_021331_p61 | protein of an unannotated phage | phrog_38 | terminase large subunit | head and packaging | 1 | 25574 | 27142 |
| YP_008059723.1 | NC_021331_p1 | protein of an unannotated phage | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 1308 | 2240 |
| YP_008059767.1 | NC_021331_p45 | protein of an unannotated phage | phrog_9755 | unknown function | unknown function | 1 | 20929 | 21114 |
| YP_008059754.1 | NC_021331_p32 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 16506 | 16631 |
| YP_008059806.1 | NC_021331_p84 | protein of an unannotated phage | phrog_4281 | unknown function | unknown function | -1 | 45529 | 45759 |
| YP_008059729.1 | NC_021331_p7 | protein of an unannotated phage | phrog_2676 | unknown function | unknown function | 1 | 6090 | 6329 |
| YP_008059725.1 | NC_021331_p3 | protein of an unannotated phage | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 2859 | 4541 |
| YP_008059728.1 | NC_021331_p6 | protein of an unannotated phage | phrog_111 | DNA methyltransferase | other | 1 | 5384 | 6085 |
| YP_008059803.1 | NC_021331_p81 | protein of an unannotated phage | phrog_32 | tail assembly protein | tail | 1 | 40477 | 41010 |
| YP_008059793.1 | NC_021331_p71 | protein of an unannotated phage | phrog_161 | head closure Hc1 | connector | 1 | 33223 | 33594 |
| YP_008059740.1 | NC_021331_p18 | protein of an unannotated phage | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 10620 | 12203 |
| YP_008059799.1 | NC_021331_p77 | protein of an unannotated phage | phrog_24 | tail length tape measure protein | tail | 1 | 35854 | 38526 |
| YP_008059731.1 | NC_021331_p9 | protein of an unannotated phage | phrog_2817 | unknown function | unknown function | 1 | 6571 | 6813 |
| YP_008059784.1 | NC_021331_p62 | protein of an unannotated phage | phrog_15615 | virion structural protein | head and packaging | 1 | 27211 | 27984 |
| YP_008059763.1 | NC_021331_p41 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 19671 | 19892 |
| YP_008059807.1 | NC_021331_p85 | protein of an unannotated phage | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 46260 | 47321 |
| YP_008059755.1 | NC_021331_p33 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 16975 | 17292 |
| YP_008059750.1 | NC_021331_p28 | protein of an unannotated phage | phrog_4653 | unknown function | unknown function | -1 | 15275 | 15427 |
| YP_008059811.1 | NC_021331_p89 | protein of an unannotated phage | phrog_7239 | unknown function | unknown function | -1 | 48895 | 49152 |
| YP_008059762.1 | NC_021331_p40 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 19454 | 19684 |
| YP_008059743.1 | NC_021331_p21 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 13005 | 13655 |
| YP_008059738.1 | NC_021331_p16 | protein of an unannotated phage | phrog_2794 | unknown function | unknown function | -1 | 9706 | 10098 |
| YP_008059760.1 | NC_021331_p38 | protein of an unannotated phage | phrog_7116 | unknown function | unknown function | 1 | 18262 | 19155 |
| YP_008059745.1 | NC_021331_p23 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 13885 | 13998 |
| YP_008059732.1 | NC_021331_p10 | protein of an unannotated phage | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 6912 | 8027 |
| YP_008059724.1 | NC_021331_p2 | protein of an unannotated phage | phrog_2856 | transcriptional regulator | transcription regulation | -1 | 2296 | 2769 |
| YP_008059790.1 | NC_021331_p68 | protein of an unannotated phage | phrog_264 | major head protein | head and packaging | 1 | 31458 | 32432 |
| YP_008059749.1 | NC_021331_p27 | protein of an unannotated phage | phrog_1972 | unknown function | unknown function | -1 | 14995 | 15285 |
| YP_008059768.1 | NC_021331_p46 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 21170 | 21334 |
| YP_008059809.1 | NC_021331_p87 | protein of an unannotated phage | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 47727 | 48383 |
| YP_008059802.1 | NC_021331_p80 | protein of an unannotated phage | phrog_30 | minor tail protein | tail | 1 | 39702 | 40433 |
| YP_008059759.1 | NC_021331_p37 | protein of an unannotated phage | phrog_3623 | unknown function | unknown function | 1 | 17978 | 18163 |
| YP_008059812.1 | NC_021331_p90 | protein of an unannotated phage | phrog_8329 | unknown function | unknown function | -1 | 49139 | 49630 |
| YP_008059756.1 | NC_021331_p34 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 17322 | 17444 |
| YP_008059730.1 | NC_021331_p8 | protein of an unannotated phage | phrog_2180 | unknown function | unknown function | 1 | 6402 | 6581 |
| YP_008059751.1 | NC_021331_p29 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 15505 | 15771 |
| YP_008059780.1 | NC_021331_p58 | protein of an unannotated phage | phrog_2919 | unknown function | unknown function | 1 | 24585 | 24737 |
| YP_008059746.1 | NC_021331_p24 | protein of an unannotated phage | phrog_4344 | unknown function | unknown function | -1 | 14046 | 14273 |
| YP_008059789.1 | NC_021331_p67 | protein of an unannotated phage | phrog_1989 | unknown function | unknown function | 1 | 30985 | 31374 |
| YP_008059765.1 | NC_021331_p43 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 20440 | 20601 |
| YP_008059772.1 | NC_021331_p50 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 22471 | 22734 |
| YP_008059810.1 | NC_021331_p88 | protein of an unannotated phage | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 48428 | 48880 |
| YP_008059794.1 | NC_021331_p72 | protein of an unannotated phage | phrog_169 | tail completion or Neck1 protein | connector | 1 | 33587 | 34030 |
| YP_008059787.1 | NC_021331_p65 | protein of an unannotated phage | phrog_530 | head maturation protease | head and packaging | 1 | 29258 | 30370 |
| YP_008059785.1 | NC_021331_p63 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 28074 | 28490 |
| YP_008059798.1 | NC_021331_p76 | protein of an unannotated phage | phrog_680 | tail length tape measure protein | tail | 1 | 35623 | 35814 |
| YP_008059792.1 | NC_021331_p70 | protein of an unannotated phage | phrog_302 | virion structural protein | head and packaging | 1 | 32810 | 33226 |
| YP_008059753.1 | NC_021331_p31 | protein of an unannotated phage | phrog_6147 | unknown function | unknown function | -1 | 16027 | 16299 |
| YP_008059747.1 | NC_021331_p25 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 14448 | 14729 |
| YP_008059797.1 | NC_021331_p75 | protein of an unannotated phage | phrog_569 | tail length tape measure protein | tail | 1 | 35186 | 35503 |
| YP_008059773.1 | NC_021331_p51 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 22731 | 22907 |
| YP_008059726.1 | NC_021331_p4 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 4538 | 4903 |
| YP_008059801.1 | NC_021331_p79 | protein of an unannotated phage | phrog_18 | minor tail protein | tail | 1 | 38941 | 39702 |
| YP_008059744.1 | NC_021331_p22 | protein of an unannotated phage | phrog_9323 | unknown function | unknown function | -1 | 13640 | 13888 |
| YP_008059741.1 | NC_021331_p19 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 12271 | 12402 |
| YP_008059734.1 | NC_021331_p12 | protein of an unannotated phage | phrog_7 | endolysin | lysis | 1 | 8389 | 8877 |
| YP_008059800.1 | NC_021331_p78 | protein of an unannotated phage | phrog_14 | minor tail protein | tail | 1 | 38529 | 38879 |
| YP_008059764.1 | NC_021331_p42 | protein of an unannotated phage | phrog_415 | polynucleotide kinase | other | 1 | 19904 | 20443 |
| YP_008059735.1 | NC_021331_p13 | protein of an unannotated phage | phrog_1804 | Rz-like spanin | lysis | 1 | 8880 | 9296 |