Genomic map of Staphylococcus phage StauST398-3 (NC_021332)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021332
Definition
Staphylococcus phage StauST398-3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus.
DB of origin
REFSEQ
Length
41392
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
69
%GC
35.59
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008059860.1 NC_021332_p44 hypothetical protein phrog_16691 unknown function unknown function 1 20460 20693
YP_008059859.1 NC_021332_p43 hypothetical protein phrog_115 minor head protein head and packaging 1 19506 20456
YP_008059869.1 NC_021332_p53 hypothetical protein phrog_183 tail chaperone protein tail 1 24627 25139
YP_008059817.1 NC_021332_p1 site-specific recombinase phrog_1 integrase integration and excision -1 78 1127
YP_008059832.1 NC_021332_p16 hypothetical protein phrog_6493 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 7385 8140
YP_008059830.1 NC_021332_p14 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 6276 6704
YP_008059874.1 NC_021332_p58 hypothetical protein phrog_287 minor tail protein tail 1 31223 33121
YP_008059820.1 NC_021332_p4 hypothetical protein phrog_87 metallo-protease other -1 2220 2678
YP_008059877.1 NC_021332_p61 hypothetical protein phrog_23700 unknown function unknown function 1 35421 35504
YP_008059846.1 NC_021332_p30 hypothetical protein phrog_4380 unknown function unknown function 1 12864 13415
YP_008059831.1 NC_021332_p15 hypothetical protein phrog_398 unknown function unknown function 1 6718 7392
YP_008059852.1 NC_021332_p36 hypothetical protein phrog_301 secreted protein other 1 14926 15312
YP_008059829.1 NC_021332_p13 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 5638 6276
YP_008059870.1 NC_021332_p54 hypothetical protein phrog_12040 unknown function unknown function 1 25319 25468
YP_008059861.1 NC_021332_p45 hypothetical protein phrog_172 head scaffolding protein head and packaging 1 20797 21381
YP_008059845.1 NC_021332_p29 possible sensor protein phrog_98 unknown function unknown function 1 12523 12867
YP_008059818.1 NC_021332_p2 hypothetical protein phrog_4037 unknown function unknown function -1 1189 1704
YP_008059824.1 NC_021332_p8 hypothetical protein phrog_5920 unknown function unknown function 1 4187 4396
YP_008059844.1 NC_021332_p28 hypothetical protein phrog_467 unknown function unknown function 1 12116 12523
YP_008059819.1 NC_021332_p3 hypothetical protein phrog_5375 unknown function unknown function -1 1708 2199
YP_008059836.1 NC_021332_p20 hypothetical protein phrog_3161 unknown function unknown function 1 9767 9946
YP_008059858.1 NC_021332_p42 phage portal protein phrog_64 portal protein head and packaging 1 18113 19537
YP_008059848.1 NC_021332_p32 hypothetical protein phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 13755 14261
YP_008059822.1 NC_021332_p6 Cro-like protein singleton transcriptional repressor transcription regulation 1 3243 3398
YP_008059862.1 NC_021332_p46 phage major head protein phrog_10 major head protein head and packaging 1 21398 22312
YP_008059828.1 NC_021332_p12 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 5159 5638
YP_008059821.1 NC_021332_p5 repressor protein phrog_8 transcriptional regulator transcription regulation -1 2700 3026
YP_008059884.1 NC_021332_p68 hypothetical protein phrog_1529 unknown function unknown function 1 40805 40999
YP_008059843.1 NC_021332_p27 hypothetical protein phrog_1241 unknown function unknown function 1 11898 12113
YP_008059841.1 NC_021332_p25 hypothetical protein phrog_236 nucleotide kinase other 1 11390 11644
YP_008059875.1 NC_021332_p59 hypothetical protein phrog_257 minor tail protein tail 1 33121 34944
YP_008059838.1 NC_021332_p22 resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 10180 10587
YP_008059834.1 NC_021332_p18 helicase DnaB phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8493 9734
YP_008059871.1 NC_021332_p55 hypothetical protein phrog_58 tail length tape measure protein tail 1 25499 28357
YP_008059850.1 NC_021332_p34 hypothetical protein phrog_1122 unknown function unknown function 1 14501 14704
YP_008059849.1 NC_021332_p33 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 14298 14504
YP_008059842.1 NC_021332_p26 hypothetical protein phrog_258 virulence associated other 1 11650 11892
YP_008059827.1 NC_021332_p11 hypothetical protein phrog_3119 unknown function unknown function 1 4930 5166
YP_008059865.1 NC_021332_p49 hypothetical protein phrog_25 head closure Hc1 connector 1 22835 23170
YP_008059823.1 NC_021332_p7 transcription antirepressor phrog_463 anti-repressor transcription regulation 1 3437 4162
YP_008059876.1 NC_021332_p60 hypothetical protein phrog_300 tail fiber protein tail 1 34944 35321
YP_008059835.1 NC_021332_p19 hypothetical protein singleton unknown function unknown function 1 9691 9774
YP_008059857.1 NC_021332_p41 phage terminase large subunit phrog_2 terminase large subunit head and packaging 1 16893 18116
YP_008059854.1 NC_021332_p38 hypothetical protein phrog_1367 unknown function unknown function 1 15483 15629
YP_008059864.1 NC_021332_p48 hypothetical protein phrog_1161 head-tail adaptor connector 1 22473 22823
YP_008059855.1 NC_021332_p39 phage transcriptional activator phrog_36 transcriptional regulator transcription regulation 1 15653 16075
YP_008059866.1 NC_021332_p50 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 23187 23564
YP_008059880.1 NC_021332_p64 hypothetical protein phrog_24886 unknown function unknown function 1 37868 38281
YP_008059882.1 NC_021332_p66 hypothetical protein phrog_635 endolysin lysis 1 38755 40200
YP_008059825.1 NC_021332_p9 hypothetical protein phrog_13915 unknown function unknown function -1 4429 4539
YP_008059883.1 NC_021332_p67 hypothetical protein singleton unknown function unknown function 1 40678 40779
YP_008059879.1 NC_021332_p63 hypothetical protein phrog_759 tail associated cell-wall hydrolase other 1 36161 37855
YP_008059851.1 NC_021332_p35 hypothetical protein phrog_555 unknown function unknown function 1 14715 14933
YP_008059873.1 NC_021332_p57 phage minor structural protein phrog_663 minor head protein head and packaging 1 29324 31210
YP_008059826.1 NC_021332_p10 hypothetical protein phrog_401 unknown function unknown function 1 4626 4922
YP_008059837.1 NC_021332_p21 hypothetical protein phrog_433 unknown function unknown function 1 9949 10170
YP_008059833.1 NC_021332_p17 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 8140 8496
YP_008059856.1 NC_021332_p40 hypothetical protein phrog_1595 terminase small subunit head and packaging 1 16583 16900
YP_008059881.1 NC_021332_p65 phage holin phrog_962 holin lysis 1 38337 38774
YP_008059868.1 NC_021332_p52 hypothetical protein phrog_238 major tail protein tail 1 24003 24560
YP_008059872.1 NC_021332_p56 hypothetical protein phrog_33 distal tail protein Dit tail 1 28450 29313
YP_008059878.1 NC_021332_p62 hypothetical protein phrog_276 unknown function unknown function 1 35587 35844
YP_008059847.1 NC_021332_p31 hypothetical protein phrog_4872 unknown function unknown function 1 13579 13740
YP_008059840.1 NC_021332_p24 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 10815 11390
YP_008059863.1 NC_021332_p47 hypothetical protein phrog_2406 unknown function unknown function 1 22321 22467
YP_008059867.1 NC_021332_p51 tail protein phrog_176 tail terminator connector 1 23577 24002
YP_008059885.1 NC_021332_p69 hypothetical protein phrog_16907 unknown function unknown function 1 41014 41214
YP_008059853.1 NC_021332_p37 phage associated transcriptional activator phrog_152 RinB-like transcriptional activator transcription regulation 1 15309 15482
YP_008059839.1 NC_021332_p23 hypothetical protein phrog_299 unknown function unknown function 1 10587 10772