| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021332 |
Definition |
Staphylococcus phage StauST398-3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus. |
DB of origin |
REFSEQ |
Length |
41392 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
69 |
%GC |
35.59 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008059860.1 | NC_021332_p44 | hypothetical protein | phrog_16691 | unknown function | unknown function | 1 | 20460 | 20693 |
| YP_008059859.1 | NC_021332_p43 | hypothetical protein | phrog_115 | minor head protein | head and packaging | 1 | 19506 | 20456 |
| YP_008059869.1 | NC_021332_p53 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 24627 | 25139 |
| YP_008059817.1 | NC_021332_p1 | site-specific recombinase | phrog_1 | integrase | integration and excision | -1 | 78 | 1127 |
| YP_008059832.1 | NC_021332_p16 | hypothetical protein | phrog_6493 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 7385 | 8140 |
| YP_008059830.1 | NC_021332_p14 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 6276 | 6704 |
| YP_008059874.1 | NC_021332_p58 | hypothetical protein | phrog_287 | minor tail protein | tail | 1 | 31223 | 33121 |
| YP_008059820.1 | NC_021332_p4 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 2220 | 2678 |
| YP_008059877.1 | NC_021332_p61 | hypothetical protein | phrog_23700 | unknown function | unknown function | 1 | 35421 | 35504 |
| YP_008059846.1 | NC_021332_p30 | hypothetical protein | phrog_4380 | unknown function | unknown function | 1 | 12864 | 13415 |
| YP_008059831.1 | NC_021332_p15 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 6718 | 7392 |
| YP_008059852.1 | NC_021332_p36 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 14926 | 15312 |
| YP_008059829.1 | NC_021332_p13 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5638 | 6276 |
| YP_008059870.1 | NC_021332_p54 | hypothetical protein | phrog_12040 | unknown function | unknown function | 1 | 25319 | 25468 |
| YP_008059861.1 | NC_021332_p45 | hypothetical protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 20797 | 21381 |
| YP_008059845.1 | NC_021332_p29 | possible sensor protein | phrog_98 | unknown function | unknown function | 1 | 12523 | 12867 |
| YP_008059818.1 | NC_021332_p2 | hypothetical protein | phrog_4037 | unknown function | unknown function | -1 | 1189 | 1704 |
| YP_008059824.1 | NC_021332_p8 | hypothetical protein | phrog_5920 | unknown function | unknown function | 1 | 4187 | 4396 |
| YP_008059844.1 | NC_021332_p28 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 12116 | 12523 |
| YP_008059819.1 | NC_021332_p3 | hypothetical protein | phrog_5375 | unknown function | unknown function | -1 | 1708 | 2199 |
| YP_008059836.1 | NC_021332_p20 | hypothetical protein | phrog_3161 | unknown function | unknown function | 1 | 9767 | 9946 |
| YP_008059858.1 | NC_021332_p42 | phage portal protein | phrog_64 | portal protein | head and packaging | 1 | 18113 | 19537 |
| YP_008059848.1 | NC_021332_p32 | hypothetical protein | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 13755 | 14261 |
| YP_008059822.1 | NC_021332_p6 | Cro-like protein | singleton | transcriptional repressor | transcription regulation | 1 | 3243 | 3398 |
| YP_008059862.1 | NC_021332_p46 | phage major head protein | phrog_10 | major head protein | head and packaging | 1 | 21398 | 22312 |
| YP_008059828.1 | NC_021332_p12 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 5159 | 5638 |
| YP_008059821.1 | NC_021332_p5 | repressor protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2700 | 3026 |
| YP_008059884.1 | NC_021332_p68 | hypothetical protein | phrog_1529 | unknown function | unknown function | 1 | 40805 | 40999 |
| YP_008059843.1 | NC_021332_p27 | hypothetical protein | phrog_1241 | unknown function | unknown function | 1 | 11898 | 12113 |
| YP_008059841.1 | NC_021332_p25 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 11390 | 11644 |
| YP_008059875.1 | NC_021332_p59 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 33121 | 34944 |
| YP_008059838.1 | NC_021332_p22 | resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 10180 | 10587 |
| YP_008059834.1 | NC_021332_p18 | helicase DnaB | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8493 | 9734 |
| YP_008059871.1 | NC_021332_p55 | hypothetical protein | phrog_58 | tail length tape measure protein | tail | 1 | 25499 | 28357 |
| YP_008059850.1 | NC_021332_p34 | hypothetical protein | phrog_1122 | unknown function | unknown function | 1 | 14501 | 14704 |
| YP_008059849.1 | NC_021332_p33 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 14298 | 14504 |
| YP_008059842.1 | NC_021332_p26 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 11650 | 11892 |
| YP_008059827.1 | NC_021332_p11 | hypothetical protein | phrog_3119 | unknown function | unknown function | 1 | 4930 | 5166 |
| YP_008059865.1 | NC_021332_p49 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 22835 | 23170 |
| YP_008059823.1 | NC_021332_p7 | transcription antirepressor | phrog_463 | anti-repressor | transcription regulation | 1 | 3437 | 4162 |
| YP_008059876.1 | NC_021332_p60 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 34944 | 35321 |
| YP_008059835.1 | NC_021332_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9691 | 9774 |
| YP_008059857.1 | NC_021332_p41 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 16893 | 18116 |
| YP_008059854.1 | NC_021332_p38 | hypothetical protein | phrog_1367 | unknown function | unknown function | 1 | 15483 | 15629 |
| YP_008059864.1 | NC_021332_p48 | hypothetical protein | phrog_1161 | head-tail adaptor | connector | 1 | 22473 | 22823 |
| YP_008059855.1 | NC_021332_p39 | phage transcriptional activator | phrog_36 | transcriptional regulator | transcription regulation | 1 | 15653 | 16075 |
| YP_008059866.1 | NC_021332_p50 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 23187 | 23564 |
| YP_008059880.1 | NC_021332_p64 | hypothetical protein | phrog_24886 | unknown function | unknown function | 1 | 37868 | 38281 |
| YP_008059882.1 | NC_021332_p66 | hypothetical protein | phrog_635 | endolysin | lysis | 1 | 38755 | 40200 |
| YP_008059825.1 | NC_021332_p9 | hypothetical protein | phrog_13915 | unknown function | unknown function | -1 | 4429 | 4539 |
| YP_008059883.1 | NC_021332_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40678 | 40779 |
| YP_008059879.1 | NC_021332_p63 | hypothetical protein | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 36161 | 37855 |
| YP_008059851.1 | NC_021332_p35 | hypothetical protein | phrog_555 | unknown function | unknown function | 1 | 14715 | 14933 |
| YP_008059873.1 | NC_021332_p57 | phage minor structural protein | phrog_663 | minor head protein | head and packaging | 1 | 29324 | 31210 |
| YP_008059826.1 | NC_021332_p10 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 4626 | 4922 |
| YP_008059837.1 | NC_021332_p21 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 9949 | 10170 |
| YP_008059833.1 | NC_021332_p17 | hypothetical protein | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 8140 | 8496 |
| YP_008059856.1 | NC_021332_p40 | hypothetical protein | phrog_1595 | terminase small subunit | head and packaging | 1 | 16583 | 16900 |
| YP_008059881.1 | NC_021332_p65 | phage holin | phrog_962 | holin | lysis | 1 | 38337 | 38774 |
| YP_008059868.1 | NC_021332_p52 | hypothetical protein | phrog_238 | major tail protein | tail | 1 | 24003 | 24560 |
| YP_008059872.1 | NC_021332_p56 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 28450 | 29313 |
| YP_008059878.1 | NC_021332_p62 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 35587 | 35844 |
| YP_008059847.1 | NC_021332_p31 | hypothetical protein | phrog_4872 | unknown function | unknown function | 1 | 13579 | 13740 |
| YP_008059840.1 | NC_021332_p24 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 10815 | 11390 |
| YP_008059863.1 | NC_021332_p47 | hypothetical protein | phrog_2406 | unknown function | unknown function | 1 | 22321 | 22467 |
| YP_008059867.1 | NC_021332_p51 | tail protein | phrog_176 | tail terminator | connector | 1 | 23577 | 24002 |
| YP_008059885.1 | NC_021332_p69 | hypothetical protein | phrog_16907 | unknown function | unknown function | 1 | 41014 | 41214 |
| YP_008059853.1 | NC_021332_p37 | phage associated transcriptional activator | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 15309 | 15482 |
| YP_008059839.1 | NC_021332_p23 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 10587 | 10772 |