| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021339 |
Definition |
Streptomyces phage Zemlya, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Likavirus. |
DB of origin |
REFSEQ |
Length |
51077 |
Host Name |
Streptomyces lividans |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
76 |
%GC |
65.67 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008060238.1 | NC_021339_p5 | thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 1664 | 1915 |
| YP_008060299.1 | NC_021339_p66 | hypothetical protein | phrog_4867 | unknown function | unknown function | -1 | 45256 | 45612 |
| YP_008060248.1 | NC_021339_p15 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9554 | 10057 |
| YP_008060296.1 | NC_021339_p63 | hypothetical protein | phrog_9416 | unknown function | unknown function | -1 | 44379 | 44654 |
| YP_008060271.1 | NC_021339_p38 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 27972 | 28334 |
| YP_008060289.1 | NC_021339_p56 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 41525 | 42043 |
| YP_008060249.1 | NC_021339_p16 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 10074 | 10829 |
| YP_008060290.1 | NC_021339_p57 | hypothetical protein | phrog_3424 | unknown function | unknown function | -1 | 42040 | 42273 |
| YP_008060240.1 | NC_021339_p7 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2376 | 4022 |
| YP_008060244.1 | NC_021339_p11 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 7220 | 8305 |
| YP_008060256.1 | NC_021339_p23 | hypothetical protein | phrog_4013 | unknown function | unknown function | 1 | 17368 | 19353 |
| YP_008060280.1 | NC_021339_p47 | hypothetical protein | phrog_3512 | sigma factor | transcription regulation | 1 | 31668 | 32066 |
| YP_008060258.1 | NC_021339_p25 | hypothetical protein | phrog_988 | tail protein | tail | 1 | 19928 | 21274 |
| YP_008060237.1 | NC_021339_p4 | hypothetical protein | phrog_3555 | unknown function | unknown function | 1 | 1428 | 1658 |
| YP_008060279.1 | NC_021339_p46 | hypothetical protein | phrog_1340 | unknown function | unknown function | 1 | 31315 | 31671 |
| YP_008060282.1 | NC_021339_p49 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 32513 | 34603 |
| YP_008060264.1 | NC_021339_p31 | hypothetical protein | phrog_5250 | unknown function | unknown function | 1 | 24001 | 24303 |
| YP_008060273.1 | NC_021339_p40 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28485 | 28904 |
| YP_008060259.1 | NC_021339_p26 | hypothetical protein | phrog_3534 | unknown function | unknown function | 1 | 21274 | 21627 |
| YP_008060254.1 | NC_021339_p21 | hypothetical protein | phrog_538 | minor tail protein | tail | 1 | 15855 | 17066 |
| YP_008060304.1 | NC_021339_p71 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 47384 | 47803 |
| YP_008060306.1 | NC_021339_p73 | hypothetical protein | phrog_4313 | unknown function | unknown function | -1 | 48037 | 49014 |
| YP_008060278.1 | NC_021339_p45 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 30098 | 31288 |
| YP_008060277.1 | NC_021339_p44 | hypothetical protein | phrog_3979 | unknown function | unknown function | 1 | 29887 | 30105 |
| YP_008060307.1 | NC_021339_p74 | hypothetical protein | phrog_3994 | unknown function | unknown function | -1 | 49135 | 49611 |
| YP_008060263.1 | NC_021339_p30 | immunity repressor | phrog_3929 | transcriptional repressor | transcription regulation | 1 | 23412 | 23864 |
| YP_008060276.1 | NC_021339_p43 | hypothetical protein | phrog_6217 | unknown function | unknown function | 1 | 29732 | 29890 |
| YP_008060284.1 | NC_021339_p51 | serine integrase | phrog_95 | integrase | integration and excision | 1 | 35100 | 36743 |
| YP_008060308.1 | NC_021339_p75 | hypothetical protein | phrog_4485 | unknown function | unknown function | -1 | 49655 | 49774 |
| YP_008060287.1 | NC_021339_p54 | hypothetical protein | phrog_5971 | unknown function | unknown function | -1 | 37838 | 37990 |
| YP_008060286.1 | NC_021339_p53 | hypothetical protein | phrog_4071 | unknown function | unknown function | -1 | 37563 | 37835 |
| YP_008060305.1 | NC_021339_p72 | hypothetical protein | phrog_4275 | unknown function | unknown function | -1 | 47817 | 47942 |
| YP_008060247.1 | NC_021339_p14 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 9156 | 9554 |
| YP_008060292.1 | NC_021339_p59 | hypothetical protein | phrog_4024 | unknown function | unknown function | -1 | 42800 | 43213 |
| YP_008060267.1 | NC_021339_p34 | hypothetical protein | phrog_8950 | unknown function | unknown function | 1 | 25913 | 26059 |
| YP_008060266.1 | NC_021339_p33 | hypothetical protein | phrog_3912 | unknown function | unknown function | 1 | 25392 | 25916 |
| YP_008060235.1 | NC_021339_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 703 | 1014 |
| YP_008060303.1 | NC_021339_p70 | hypothetical protein | phrog_4239 | unknown function | unknown function | -1 | 46848 | 47258 |
| YP_008060285.1 | NC_021339_p52 | hypothetical protein | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 36853 | 37566 |
| YP_008060301.1 | NC_021339_p68 | HNH domain protein | phrog_4842 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 46085 | 46540 |
| YP_008060288.1 | NC_021339_p55 | DNA polymerase III subunit alpha | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 38030 | 41509 |
| YP_008060260.1 | NC_021339_p27 | hypothetical protein | phrog_1493 | endolysin | lysis | 1 | 21653 | 22741 |
| YP_008060245.1 | NC_021339_p12 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8375 | 8824 |
| YP_008060241.1 | NC_021339_p8 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 4055 | 5491 |
| YP_008060251.1 | NC_021339_p18 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 10950 | 11273 |
| YP_008060268.1 | NC_021339_p35 | hypothetical protein | phrog_1288 | unknown function | unknown function | 1 | 26104 | 26541 |
| YP_008060309.1 | NC_021339_p76 | hypothetical protein | phrog_2563 | unknown function | unknown function | -1 | 49872 | 50282 |
| YP_008060270.1 | NC_021339_p37 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 27028 | 27903 |
| YP_008060252.1 | NC_021339_p19 | tape measure | phrog_305 | tail length tape measure protein | tail | 1 | 11666 | 14989 |
| YP_008060298.1 | NC_021339_p65 | hypothetical protein | phrog_4785 | unknown function | unknown function | -1 | 44911 | 45171 |
| YP_008060253.1 | NC_021339_p20 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 14993 | 15850 |
| YP_008060295.1 | NC_021339_p62 | hypothetical protein | phrog_3991 | unknown function | unknown function | -1 | 44140 | 44382 |
| YP_008060262.1 | NC_021339_p29 | hypothetical protein | phrog_4061 | unknown function | unknown function | -1 | 23062 | 23325 |
| YP_008060283.1 | NC_021339_p50 | Lsr2-like protein | phrog_6509 | Lsr2-like DNA bridging protein | DNA, RNA and nucleotide metabolism | 1 | 34650 | 34880 |
| YP_008060255.1 | NC_021339_p22 | hypothetical protein | phrog_1276 | unknown function | unknown function | 1 | 17070 | 17366 |
| YP_008060281.1 | NC_021339_p48 | hypothetical protein | phrog_4123 | unknown function | unknown function | 1 | 32063 | 32416 |
| YP_008060239.1 | NC_021339_p6 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1930 | 2355 |
| YP_008060265.1 | NC_021339_p32 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 24300 | 25271 |
| YP_008060246.1 | NC_021339_p13 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 8821 | 9156 |
| YP_008060275.1 | NC_021339_p42 | hypothetical protein | phrog_4022 | unknown function | unknown function | 1 | 29400 | 29735 |
| YP_008060291.1 | NC_021339_p58 | hypothetical protein | phrog_3965 | unknown function | unknown function | -1 | 42285 | 42716 |
| YP_008060293.1 | NC_021339_p60 | dNMP kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 43254 | 43841 |
| YP_008060234.1 | NC_021339_p1 | hypothetical protein | phrog_4207 | unknown function | unknown function | -1 | 91 | 297 |
| YP_008060294.1 | NC_021339_p61 | hypothetical protein | phrog_5209 | unknown function | unknown function | -1 | 43838 | 44143 |
| YP_008060236.1 | NC_021339_p3 | hypothetical protein | phrog_18964 | unknown function | unknown function | 1 | 1171 | 1350 |
| YP_008060250.1 | NC_021339_p17 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 10950 | 11662 |
| YP_008060257.1 | NC_021339_p24 | hypothetical protein | phrog_4817 | unknown function | unknown function | 1 | 19353 | 19853 |
| YP_008060242.1 | NC_021339_p9 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 5488 | 6600 |
| YP_008060302.1 | NC_021339_p69 | hypothetical protein | phrog_3908 | unknown function | unknown function | -1 | 46643 | 46846 |
| YP_008060272.1 | NC_021339_p39 | hypothetical protein | phrog_4673 | unknown function | unknown function | 1 | 28331 | 28483 |
| YP_008060274.1 | NC_021339_p41 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28738 | 29403 |
| YP_008060300.1 | NC_021339_p67 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 45627 | 45998 |
| YP_008060243.1 | NC_021339_p10 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6604 | 7149 |
| YP_008060269.1 | NC_021339_p36 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 26609 | 27091 |
| YP_008060261.1 | NC_021339_p28 | hypothetical protein | phrog_4092 | unknown function | unknown function | 1 | 22738 | 23007 |
| YP_008060297.1 | NC_021339_p64 | hypothetical protein | phrog_9778 | unknown function | unknown function | -1 | 44738 | 44914 |