| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021534 |
Definition |
Vibrio phage pYD38-A genomic sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Roufvirus; unclassified Roufvirus. |
DB of origin |
REFSEQ |
Length |
47552 |
Host Name |
Vibrio sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
47.28 |
Number of singletons |
14 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008126241.1 | NC_021534_p77 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 47199 | 47552 |
| YP_008126184.1 | NC_021534_p20 | hypothetical protein | phrog_1785 | unknown function | unknown function | -1 | 9709 | 9948 |
| YP_008126198.1 | NC_021534_p34 | hypothetical protein | phrog_17303 | unknown function | unknown function | -1 | 16923 | 17120 |
| YP_008126211.1 | NC_021534_p47 | hypothetical protein | phrog_12906 | unknown function | unknown function | -1 | 23084 | 23290 |
| YP_008126234.1 | NC_021534_p70 | hypothetical protein | phrog_791 | unknown function | unknown function | -1 | 43275 | 43982 |
| YP_008126195.1 | NC_021534_p31 | hypothetical protein | phrog_20630 | unknown function | unknown function | 1 | 14293 | 14487 |
| YP_008126207.1 | NC_021534_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21684 | 21842 |
| YP_008126182.1 | NC_021534_p18 | hypothetical protein | phrog_1687 | MarR family transcrition regulator | transcription regulation | -1 | 9029 | 9499 |
| YP_008126191.1 | NC_021534_p27 | hypothetical protein | phrog_13249 | holin | lysis | -1 | 12256 | 12489 |
| YP_008126174.1 | NC_021534_p10 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4323 | 4565 |
| YP_008126168.1 | NC_021534_p4 | hypothetical protein | phrog_13738 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 1310 | 1597 |
| YP_008126181.1 | NC_021534_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 8751 | 9041 |
| YP_008126199.1 | NC_021534_p35 | hypothetical protein | phrog_26819 | unknown function | unknown function | -1 | 17120 | 17302 |
| YP_008126173.1 | NC_021534_p9 | hypothetical protein | phrog_5335 | unknown function | unknown function | -1 | 3798 | 4310 |
| YP_008126226.1 | NC_021534_p62 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33166 | 33669 |
| YP_008126216.1 | NC_021534_p52 | hypothetical protein | phrog_35306 | unknown function | unknown function | 1 | 24883 | 25140 |
| YP_008126194.1 | NC_021534_p30 | hypothetical protein | phrog_7798 | unknown function | unknown function | 1 | 13437 | 14291 |
| YP_008126224.1 | NC_021534_p60 | hypothetical protein | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 31139 | 32095 |
| YP_008126193.1 | NC_021534_p29 | hypothetical protein | phrog_2315 | unknown function | unknown function | 1 | 13019 | 13309 |
| YP_008126229.1 | NC_021534_p65 | hypothetical protein | phrog_469 | tail protein | tail | -1 | 36193 | 38649 |
| YP_008126220.1 | NC_021534_p56 | endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 28054 | 28575 |
| YP_008126192.1 | NC_021534_p28 | lysozyme | phrog_7 | endolysin | lysis | -1 | 12486 | 12920 |
| YP_008126233.1 | NC_021534_p69 | tail length tape measure protein | phrog_1107 | tail length tape measure protein | tail | -1 | 39982 | 43275 |
| YP_008126196.1 | NC_021534_p32 | hypothetical protein | phrog_758 | head morphogenesis | head and packaging | -1 | 14500 | 15396 |
| YP_008126185.1 | NC_021534_p21 | hypothetical protein | phrog_15697 | unknown function | unknown function | -1 | 9945 | 10136 |
| YP_008126205.1 | NC_021534_p41 | hypothetical protein | phrog_9747 | unknown function | unknown function | -1 | 20969 | 21409 |
| YP_008126178.1 | NC_021534_p14 | hypothetical protein | phrog_766 | head decoration | head and packaging | -1 | 6359 | 6823 |
| YP_008126239.1 | NC_021534_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46235 | 46522 |
| YP_008126218.1 | NC_021534_p54 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 26694 | 26924 |
| YP_008126203.1 | NC_021534_p39 | hypothetical protein | phrog_415 | polynucleotide kinase | other | 1 | 18039 | 18329 |
| YP_008126217.1 | NC_021534_p53 | hypothetical protein | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 25141 | 26694 |
| YP_008126227.1 | NC_021534_p63 | hypothetical protein | phrog_19895 | unknown function | unknown function | -1 | 33729 | 33998 |
| YP_008126240.1 | NC_021534_p76 | hypothetical protein | phrog_782 | unknown function | unknown function | -1 | 46819 | 47202 |
| YP_008126183.1 | NC_021534_p19 | hypothetical protein | phrog_599 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 9489 | 9716 |
| YP_008126187.1 | NC_021534_p23 | hypothetical protein | phrog_14963 | unknown function | unknown function | 1 | 10531 | 10731 |
| YP_008126232.1 | NC_021534_p68 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | -1 | 39512 | 39982 |
| YP_008126206.1 | NC_021534_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21490 | 21684 |
| YP_008126170.1 | NC_021534_p6 | hypothetical protein | phrog_1033 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 2241 | 3056 |
| YP_008126188.1 | NC_021534_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10731 | 10913 |
| YP_008126225.1 | NC_021534_p61 | hypothetical protein | phrog_1366 | unknown function | unknown function | 1 | 32119 | 33156 |
| YP_008126230.1 | NC_021534_p66 | hypothetical protein | phrog_329 | minor tail protein | tail | -1 | 38621 | 39079 |
| YP_008126179.1 | NC_021534_p15 | hypothetical protein | phrog_760 | unknown function | unknown function | -1 | 6823 | 8223 |
| YP_008126167.1 | NC_021534_p3 | hypothetical protein | phrog_786 | unknown function | unknown function | -1 | 940 | 1296 |
| YP_008126171.1 | NC_021534_p7 | hypothetical protein | phrog_4439 | unknown function | unknown function | 1 | 3056 | 3229 |
| YP_008126180.1 | NC_021534_p16 | hypothetical protein | phrog_14549 | unknown function | unknown function | -1 | 8406 | 8750 |
| YP_008126228.1 | NC_021534_p64 | hypothetical protein | phrog_14442 | tail protein | tail | -1 | 33998 | 35548 |
| YP_008126197.1 | NC_021534_p33 | hypothetical protein | phrog_146 | portal protein | head and packaging | -1 | 15425 | 16873 |
| YP_008126202.1 | NC_021534_p38 | hypothetical protein | phrog_13301 | unknown function | unknown function | -1 | 17711 | 17950 |
| YP_008126186.1 | NC_021534_p22 | hypothetical protein | singleton | unknown function | unknown function | -1 | 10220 | 10435 |
| YP_008126214.1 | NC_021534_p50 | hypothetical protein | phrog_16924 | unknown function | unknown function | -1 | 24010 | 24210 |
| YP_008126166.1 | NC_021534_p2 | hypothetical protein | phrog_797 | unknown function | unknown function | -1 | 477 | 821 |
| YP_008126201.1 | NC_021534_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17559 | 17714 |
| YP_008126189.1 | NC_021534_p25 | hypothetical protein | phrog_17775 | unknown function | unknown function | 1 | 10910 | 11389 |
| YP_008126213.1 | NC_021534_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23716 | 23994 |
| YP_008126169.1 | NC_021534_p5 | hypothetical protein | phrog_1273 | unknown function | unknown function | 1 | 1827 | 2120 |
| YP_008126200.1 | NC_021534_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17302 | 17520 |
| YP_008126176.1 | NC_021534_p12 | hypothetical protein | phrog_322 | unknown function | unknown function | -1 | 4841 | 5215 |
| YP_008126165.1 | NC_021534_p1 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 57 | 473 |
| YP_008126204.1 | NC_021534_p40 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 18350 | 20869 |
| YP_008126231.1 | NC_021534_p67 | hypothetical protein | phrog_396 | minor tail protein | tail | -1 | 39042 | 39512 |
| YP_008126238.1 | NC_021534_p74 | major tail subunit | phrog_853 | major tail protein | tail | -1 | 45314 | 46069 |
| YP_008126212.1 | NC_021534_p48 | hypothetical protein | phrog_492 | unknown function | unknown function | -1 | 23287 | 23709 |
| YP_008126215.1 | NC_021534_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 24192 | 24413 |
| YP_008126237.1 | NC_021534_p73 | hypothetical protein | phrog_6022 | unknown function | unknown function | 1 | 44981 | 45250 |
| YP_008126219.1 | NC_021534_p55 | DNA primase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 26938 | 27831 |
| YP_008126175.1 | NC_021534_p11 | hypothetical protein | phrog_2138 | unknown function | unknown function | -1 | 4654 | 4848 |
| YP_008126209.1 | NC_021534_p45 | hypothetical protein | phrog_9107 | unknown function | unknown function | -1 | 22621 | 22836 |
| YP_008126221.1 | NC_021534_p57 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 28575 | 30500 |
| YP_008126177.1 | NC_021534_p13 | hypothetical protein | phrog_771 | virion structural protein | head and packaging | -1 | 5259 | 6347 |
| YP_008126222.1 | NC_021534_p58 | hypothetical protein | phrog_824 | unknown function | unknown function | 1 | 30487 | 30903 |
| YP_008126223.1 | NC_021534_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30945 | 31139 |
| YP_008126236.1 | NC_021534_p72 | HNH-endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44517 | 44978 |
| YP_008126190.1 | NC_021534_p26 | hypothetical protein | phrog_2536 | Rz-like spanin | lysis | -1 | 11889 | 12269 |
| YP_008126172.1 | NC_021534_p8 | hypothetical protein | phrog_3007 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 3229 | 3765 |
| YP_008126210.1 | NC_021534_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22836 | 23087 |
| YP_008126235.1 | NC_021534_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44076 | 44375 |
| YP_008126208.1 | NC_021534_p44 | hypothetical protein | phrog_60 | unknown function | unknown function | -1 | 21935 | 22624 |