Genomic map of Vibrio phage pYD38-A (NC_021534)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021534
Definition
Vibrio phage pYD38-A genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Roufvirus; unclassified Roufvirus.
DB of origin
REFSEQ
Length
47552
Host Name
Vibrio sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
77
%GC
47.28
Number of singletons
14
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008126241.1 NC_021534_p77 hypothetical protein phrog_5 tail completion or Neck1 protein connector -1 47199 47552
YP_008126184.1 NC_021534_p20 hypothetical protein phrog_1785 unknown function unknown function -1 9709 9948
YP_008126198.1 NC_021534_p34 hypothetical protein phrog_17303 unknown function unknown function -1 16923 17120
YP_008126211.1 NC_021534_p47 hypothetical protein phrog_12906 unknown function unknown function -1 23084 23290
YP_008126234.1 NC_021534_p70 hypothetical protein phrog_791 unknown function unknown function -1 43275 43982
YP_008126195.1 NC_021534_p31 hypothetical protein phrog_20630 unknown function unknown function 1 14293 14487
YP_008126207.1 NC_021534_p43 hypothetical protein singleton unknown function unknown function -1 21684 21842
YP_008126182.1 NC_021534_p18 hypothetical protein phrog_1687 MarR family transcrition regulator transcription regulation -1 9029 9499
YP_008126191.1 NC_021534_p27 hypothetical protein phrog_13249 holin lysis -1 12256 12489
YP_008126174.1 NC_021534_p10 hypothetical protein singleton unknown function unknown function -1 4323 4565
YP_008126168.1 NC_021534_p4 hypothetical protein phrog_13738 membrane protein moron, auxiliary metabolic gene and host takeover -1 1310 1597
YP_008126181.1 NC_021534_p17 hypothetical protein singleton unknown function unknown function -1 8751 9041
YP_008126199.1 NC_021534_p35 hypothetical protein phrog_26819 unknown function unknown function -1 17120 17302
YP_008126173.1 NC_021534_p9 hypothetical protein phrog_5335 unknown function unknown function -1 3798 4310
YP_008126226.1 NC_021534_p62 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 33166 33669
YP_008126216.1 NC_021534_p52 hypothetical protein phrog_35306 unknown function unknown function 1 24883 25140
YP_008126194.1 NC_021534_p30 hypothetical protein phrog_7798 unknown function unknown function 1 13437 14291
YP_008126224.1 NC_021534_p60 hypothetical protein phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 31139 32095
YP_008126193.1 NC_021534_p29 hypothetical protein phrog_2315 unknown function unknown function 1 13019 13309
YP_008126229.1 NC_021534_p65 hypothetical protein phrog_469 tail protein tail -1 36193 38649
YP_008126220.1 NC_021534_p56 endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 28054 28575
YP_008126192.1 NC_021534_p28 lysozyme phrog_7 endolysin lysis -1 12486 12920
YP_008126233.1 NC_021534_p69 tail length tape measure protein phrog_1107 tail length tape measure protein tail -1 39982 43275
YP_008126196.1 NC_021534_p32 hypothetical protein phrog_758 head morphogenesis head and packaging -1 14500 15396
YP_008126185.1 NC_021534_p21 hypothetical protein phrog_15697 unknown function unknown function -1 9945 10136
YP_008126205.1 NC_021534_p41 hypothetical protein phrog_9747 unknown function unknown function -1 20969 21409
YP_008126178.1 NC_021534_p14 hypothetical protein phrog_766 head decoration head and packaging -1 6359 6823
YP_008126239.1 NC_021534_p75 hypothetical protein singleton unknown function unknown function -1 46235 46522
YP_008126218.1 NC_021534_p54 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 26694 26924
YP_008126203.1 NC_021534_p39 hypothetical protein phrog_415 polynucleotide kinase other 1 18039 18329
YP_008126217.1 NC_021534_p53 hypothetical protein phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism 1 25141 26694
YP_008126227.1 NC_021534_p63 hypothetical protein phrog_19895 unknown function unknown function -1 33729 33998
YP_008126240.1 NC_021534_p76 hypothetical protein phrog_782 unknown function unknown function -1 46819 47202
YP_008126183.1 NC_021534_p19 hypothetical protein phrog_599 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 9489 9716
YP_008126187.1 NC_021534_p23 hypothetical protein phrog_14963 unknown function unknown function 1 10531 10731
YP_008126232.1 NC_021534_p68 hypothetical protein phrog_384 virion structural protein head and packaging -1 39512 39982
YP_008126206.1 NC_021534_p42 hypothetical protein singleton unknown function unknown function -1 21490 21684
YP_008126170.1 NC_021534_p6 hypothetical protein phrog_1033 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 2241 3056
YP_008126188.1 NC_021534_p24 hypothetical protein singleton unknown function unknown function 1 10731 10913
YP_008126225.1 NC_021534_p61 hypothetical protein phrog_1366 unknown function unknown function 1 32119 33156
YP_008126230.1 NC_021534_p66 hypothetical protein phrog_329 minor tail protein tail -1 38621 39079
YP_008126179.1 NC_021534_p15 hypothetical protein phrog_760 unknown function unknown function -1 6823 8223
YP_008126167.1 NC_021534_p3 hypothetical protein phrog_786 unknown function unknown function -1 940 1296
YP_008126171.1 NC_021534_p7 hypothetical protein phrog_4439 unknown function unknown function 1 3056 3229
YP_008126180.1 NC_021534_p16 hypothetical protein phrog_14549 unknown function unknown function -1 8406 8750
YP_008126228.1 NC_021534_p64 hypothetical protein phrog_14442 tail protein tail -1 33998 35548
YP_008126197.1 NC_021534_p33 hypothetical protein phrog_146 portal protein head and packaging -1 15425 16873
YP_008126202.1 NC_021534_p38 hypothetical protein phrog_13301 unknown function unknown function -1 17711 17950
YP_008126186.1 NC_021534_p22 hypothetical protein singleton unknown function unknown function -1 10220 10435
YP_008126214.1 NC_021534_p50 hypothetical protein phrog_16924 unknown function unknown function -1 24010 24210
YP_008126166.1 NC_021534_p2 hypothetical protein phrog_797 unknown function unknown function -1 477 821
YP_008126201.1 NC_021534_p37 hypothetical protein singleton unknown function unknown function -1 17559 17714
YP_008126189.1 NC_021534_p25 hypothetical protein phrog_17775 unknown function unknown function 1 10910 11389
YP_008126213.1 NC_021534_p49 hypothetical protein singleton unknown function unknown function -1 23716 23994
YP_008126169.1 NC_021534_p5 hypothetical protein phrog_1273 unknown function unknown function 1 1827 2120
YP_008126200.1 NC_021534_p36 hypothetical protein singleton unknown function unknown function -1 17302 17520
YP_008126176.1 NC_021534_p12 hypothetical protein phrog_322 unknown function unknown function -1 4841 5215
YP_008126165.1 NC_021534_p1 hypothetical protein phrog_5 tail completion or Neck1 protein connector -1 57 473
YP_008126204.1 NC_021534_p40 large terminase subunit phrog_2 terminase large subunit head and packaging -1 18350 20869
YP_008126231.1 NC_021534_p67 hypothetical protein phrog_396 minor tail protein tail -1 39042 39512
YP_008126238.1 NC_021534_p74 major tail subunit phrog_853 major tail protein tail -1 45314 46069
YP_008126212.1 NC_021534_p48 hypothetical protein phrog_492 unknown function unknown function -1 23287 23709
YP_008126215.1 NC_021534_p51 hypothetical protein singleton unknown function unknown function -1 24192 24413
YP_008126237.1 NC_021534_p73 hypothetical protein phrog_6022 unknown function unknown function 1 44981 45250
YP_008126219.1 NC_021534_p55 DNA primase phrog_510 DNA primase DNA, RNA and nucleotide metabolism -1 26938 27831
YP_008126175.1 NC_021534_p11 hypothetical protein phrog_2138 unknown function unknown function -1 4654 4848
YP_008126209.1 NC_021534_p45 hypothetical protein phrog_9107 unknown function unknown function -1 22621 22836
YP_008126221.1 NC_021534_p57 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 28575 30500
YP_008126177.1 NC_021534_p13 hypothetical protein phrog_771 virion structural protein head and packaging -1 5259 6347
YP_008126222.1 NC_021534_p58 hypothetical protein phrog_824 unknown function unknown function 1 30487 30903
YP_008126223.1 NC_021534_p59 hypothetical protein singleton unknown function unknown function 1 30945 31139
YP_008126236.1 NC_021534_p72 HNH-endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44517 44978
YP_008126190.1 NC_021534_p26 hypothetical protein phrog_2536 Rz-like spanin lysis -1 11889 12269
YP_008126172.1 NC_021534_p8 hypothetical protein phrog_3007 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 3229 3765
YP_008126210.1 NC_021534_p46 hypothetical protein singleton unknown function unknown function -1 22836 23087
YP_008126235.1 NC_021534_p71 hypothetical protein singleton unknown function unknown function 1 44076 44375
YP_008126208.1 NC_021534_p44 hypothetical protein phrog_60 unknown function unknown function -1 21935 22624