Genomic map of Mycobacterium phage Job42 (NC_021538)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021538
Definition
Mycobacterium phage Job42, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
REFSEQ
Length
59626
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
106
%GC
61.15
Number of singletons
1
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008126596.1 NC_021538_p6 scaffolding protein phrog_4638 head scaffolding protein head and packaging 1 4408 4944
YP_008126626.1 NC_021538_p36 holin phrog_443 holin lysis 1 30532 30765
YP_008126603.1 NC_021538_p13 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8408 9344
YP_008126662.1 NC_021538_p72 hypothetical protein phrog_6193 unknown function unknown function 1 48905 49030
YP_008126692.1 NC_021538_p102 hypothetical protein phrog_28092 unknown function unknown function 1 56748 57050
YP_008126673.1 NC_021538_p83 hypothetical protein phrog_4396 unknown function unknown function 1 52254 52382
YP_008126616.1 NC_021538_p26 hypothetical protein phrog_2012 minor tail protein tail 1 25315 25953
YP_008126637.1 NC_021538_p47 HTH DNA binding domain (Cro) phrog_3 transcriptional repressor transcription regulation 1 36451 36663
YP_008126656.1 NC_021538_p66 hypothetical protein phrog_5168 unknown function unknown function 1 43280 43744
YP_008126608.1 NC_021538_p18 minor tail protein phrog_106 minor tail protein tail 1 14721 16430
YP_008126668.1 NC_021538_p78 hypothetical protein phrog_2730 unknown function unknown function 1 50803 51006
YP_008126601.1 NC_021538_p11 hypothetical protein phrog_813 head-tail adaptor connector 1 6948 7352
YP_008126634.1 NC_021538_p44 integrase, (Y-int) phrog_1 integrase integration and excision 1 33592 34893
YP_008126664.1 NC_021538_p74 hypothetical protein phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 49242 50147
YP_008126611.1 NC_021538_p21 minor tail protein phrog_346 minor tail protein tail 1 19082 21619
YP_008126625.1 NC_021538_p35 lysin B phrog_102 endolysin lysis 1 29517 30518
YP_008126604.1 NC_021538_p14 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8408 8959
YP_008126651.1 NC_021538_p61 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 41920 42201
YP_008126635.1 NC_021538_p45 hypothetical protein phrog_1948 unknown function unknown function -1 34975 35427
YP_008126663.1 NC_021538_p73 hypothetical protein phrog_5500 unknown function unknown function 1 49027 49245
YP_008126617.1 NC_021538_p27 hypothetical protein phrog_754 minor tail protein tail 1 25950 26804
YP_008126621.1 NC_021538_p31 hypothetical protein phrog_1172 unknown function unknown function 1 27602 27754
YP_008126659.1 NC_021538_p69 DNA methylase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 45077 48589
YP_008126695.1 NC_021538_p105 hypothetical protein phrog_1693 unknown function unknown function 1 58721 58927
YP_008126647.1 NC_021538_p57 hypothetical protein phrog_1849 unknown function unknown function 1 40322 40603
YP_008126658.1 NC_021538_p68 HNH endonuclease domain protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44715 45080
YP_008126691.1 NC_021538_p101 hypothetical protein phrog_2057 unknown function unknown function 1 56590 56751
YP_008126648.1 NC_021538_p58 hypothetical protein phrog_658 unknown function unknown function 1 40600 40947
YP_008126622.1 NC_021538_p32 hypothetical protein phrog_747 unknown function unknown function 1 27828 28049
YP_008126629.1 NC_021538_p39 DnaQ-like protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 31381 32202
YP_008126652.1 NC_021538_p62 HTH DNA binding protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 42198 42563
YP_008126624.1 NC_021538_p34 lysin A phrog_700 endolysin lysis 1 28216 29517
YP_008126633.1 NC_021538_p43 DNA binding domain protein phrog_66 excisionase and transcriptional regulator integration and excision -1 32966 33160
YP_008126598.1 NC_021538_p8 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 5928 6299
YP_008126679.1 NC_021538_p89 hypothetical protein phrog_1545 unknown function unknown function 1 53454 53594
YP_008126619.1 NC_021538_p29 hypothetical protein phrog_411 unknown function unknown function 1 27153 27449
YP_008126669.1 NC_021538_p79 hypothetical protein phrog_1943 unknown function unknown function 1 51003 51203
YP_008126597.1 NC_021538_p7 major capsid protein phrog_10 major head protein head and packaging 1 5007 5915
YP_008126606.1 NC_021538_p16 tapemeasure phrog_1942 tail length tape measure protein tail 1 9901 13389
YP_008126681.1 NC_021538_p91 hypothetical protein phrog_2278 unknown function unknown function 1 53770 53931
YP_008126678.1 NC_021538_p88 hypothetical protein phrog_1091 unknown function unknown function 1 53278 53457
YP_008126612.1 NC_021538_p22 D-ala-D-ala carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 21616 23502
YP_008126665.1 NC_021538_p75 hypothetical protein phrog_4296 unknown function unknown function 1 50144 50506
YP_008126594.1 NC_021538_p4 portal protein phrog_104 portal protein head and packaging 1 2198 3619
YP_008126676.1 NC_021538_p86 hypothetical protein phrog_1901 unknown function unknown function 1 52824 53018
YP_008126610.1 NC_021538_p20 minor tail protein phrog_732 minor tail protein tail 1 18234 19085
YP_008126643.1 NC_021538_p53 hypothetical protein phrog_27299 unknown function unknown function 1 38833 39057
YP_008126645.1 NC_021538_p55 hypothetical protein phrog_780 unknown function unknown function 1 39394 39636
YP_008126672.1 NC_021538_p82 hypothetical protein phrog_722 unknown function unknown function 1 51811 52257
YP_008126666.1 NC_021538_p76 hypothetical protein phrog_2080 unknown function unknown function 1 50499 50723
YP_008126599.1 NC_021538_p9 hypothetical protein phrog_763 head-tail adaptor connector 1 6296 6625
YP_008126641.1 NC_021538_p51 hypothetical protein phrog_2021 unknown function unknown function 1 38265 38648
YP_008126683.1 NC_021538_p93 GIY-YIG endonuclease phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 54041 54568
YP_008126595.1 NC_021538_p5 capsid maturation protease phrog_193 head maturation protease head and packaging 1 3603 4328
YP_008126630.1 NC_021538_p40 hypothetical protein phrog_1791 unknown function unknown function 1 32218 32508
YP_008126618.1 NC_021538_p28 hypothetical protein singleton unknown function unknown function -1 26865 27005
YP_008126607.1 NC_021538_p17 transposase phrog_506 transposase integration and excision -1 13390 14610
YP_008126694.1 NC_021538_p104 hypothetical protein phrog_26719 unknown function unknown function 1 58503 58718
YP_008126674.1 NC_021538_p84 hypothetical protein phrog_647 unknown function unknown function 1 52418 52702
YP_008126661.1 NC_021538_p71 hypothetical protein phrog_1311 unknown function unknown function 1 48732 48908
YP_008126655.1 NC_021538_p65 hypothetical protein phrog_2060 DNA methyltransferase other 1 42942 43283
YP_008126592.1 NC_021538_p2 hypothetical protein phrog_4479 terminase small subunit head and packaging 1 444 698
YP_008126591.1 NC_021538_p1 HNH endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 41 373
YP_008126690.1 NC_021538_p100 hypothetical protein phrog_1385 unknown function unknown function 1 56355 56597
YP_008126646.1 NC_021538_p56 hypothetical protein phrog_1797 unknown function unknown function 1 39633 40247
YP_008126632.1 NC_021538_p42 hypothetical protein phrog_2437 unknown function unknown function -1 32765 32914
YP_008126605.1 NC_021538_p15 HNH endonuclease phrog_3593 HNH endonuclease DNA, RNA and nucleotide metabolism 1 9341 9901
YP_008126677.1 NC_021538_p87 hypothetical protein phrog_6625 unknown function unknown function 1 53018 53281
YP_008126631.1 NC_021538_p41 hypothetical protein phrog_1839 unknown function unknown function 1 32501 32593
YP_008126675.1 NC_021538_p85 hypothetical protein phrog_4152 unknown function unknown function 1 52699 52827
YP_008126685.1 NC_021538_p95 hypothetical protein phrog_33189 unknown function unknown function 1 55277 55381
YP_008126654.1 NC_021538_p64 hypothetical protein phrog_1834 unknown function unknown function 1 42715 42945
YP_008126640.1 NC_021538_p50 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 38024 38221
YP_008126620.1 NC_021538_p30 hypothetical protein phrog_932 unknown function unknown function 1 27456 27605
YP_008126593.1 NC_021538_p3 terminase phrog_2 terminase large subunit head and packaging 1 670 2157
YP_008126653.1 NC_021538_p63 hypothetical protein phrog_2078 unknown function unknown function 1 42560 42715
YP_008126682.1 NC_021538_p92 hypothetical protein phrog_6194 unknown function unknown function 1 53928 54044
YP_008126660.1 NC_021538_p70 hypothetical protein phrog_2704 unknown function unknown function 1 48586 48735
YP_008126650.1 NC_021538_p60 hypothetical protein phrog_2096 unknown function unknown function 1 41411 41923
YP_008126636.1 NC_021538_p46 immunity repressor phrog_2838 transcriptional repressor transcription regulation -1 35691 36416
YP_008126688.1 NC_021538_p98 hypothetical protein phrog_3813 unknown function unknown function 1 55703 55960
YP_008126693.1 NC_021538_p103 glycosyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 57057 58493
YP_008126657.1 NC_021538_p67 hypothetical protein phrog_1366 unknown function unknown function 1 43741 44718
YP_008126602.1 NC_021538_p12 major tail subunit phrog_476 major tail protein tail 1 7462 8271
YP_008126639.1 NC_021538_p49 hypothetical protein phrog_2025 unknown function unknown function 1 37722 37937
YP_008126687.1 NC_021538_p97 hypothetical protein phrog_1694 unknown function unknown function 1 55548 55706
YP_008126609.1 NC_021538_p19 minor tail protein phrog_110 minor tail protein tail 1 16488 18197
YP_008126670.1 NC_021538_p80 hypothetical protein phrog_722 unknown function unknown function 1 51187 51525
YP_008126638.1 NC_021538_p48 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 36721 37725
YP_008126680.1 NC_021538_p90 hypothetical protein phrog_4126 unknown function unknown function 1 53591 53773
YP_008126628.1 NC_021538_p38 hypothetical protein phrog_2004 unknown function unknown function 1 31161 31394
YP_008126615.1 NC_021538_p25 hypothetical protein phrog_2005 minor tail protein tail 1 25047 25301
YP_008126671.1 NC_021538_p81 hypothetical protein phrog_647 unknown function unknown function 1 51522 51818
YP_008126627.1 NC_021538_p37 hypothetical protein phrog_404 minor tail protein tail 1 30762 31136
YP_008126689.1 NC_021538_p99 hypothetical protein phrog_1186 unknown function unknown function 1 55957 56358
YP_008126642.1 NC_021538_p52 hypothetical protein phrog_1816 unknown function unknown function 1 38645 38836
YP_008126696.1 NC_021538_p106 glycosyltransferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 58924 59535
YP_008126623.1 NC_021538_p33 hypothetical protein phrog_5492 unknown function unknown function 1 28046 28219
YP_008126667.1 NC_021538_p77 hypothetical protein phrog_9299 unknown function unknown function 1 50720 50803
YP_008126613.1 NC_021538_p23 minor tail protein phrog_2106 minor tail protein tail 1 23499 24665
YP_008126686.1 NC_021538_p96 hypothetical protein phrog_1869 unknown function unknown function 1 55378 55542
YP_008126649.1 NC_021538_p59 WhiB phrog_1333 unknown function unknown function 1 40944 41441
YP_008126644.1 NC_021538_p54 hypothetical protein phrog_24657 unknown function unknown function 1 39054 39401
YP_008126684.1 NC_021538_p94 hypothetical protein phrog_1467 unknown function unknown function 1 54565 55236
YP_008126614.1 NC_021538_p24 hypothetical protein phrog_240 head protein head and packaging 1 24683 25024
YP_008126600.1 NC_021538_p10 hypothetical protein phrog_1929 head-tail connector protein connector 1 6632 6958