| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021538 |
Definition |
Mycobacterium phage Job42, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
59626 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
106 |
%GC |
61.15 |
Number of singletons |
1 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008126596.1 | NC_021538_p6 | scaffolding protein | phrog_4638 | head scaffolding protein | head and packaging | 1 | 4408 | 4944 |
| YP_008126626.1 | NC_021538_p36 | holin | phrog_443 | holin | lysis | 1 | 30532 | 30765 |
| YP_008126603.1 | NC_021538_p13 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8408 | 9344 |
| YP_008126662.1 | NC_021538_p72 | hypothetical protein | phrog_6193 | unknown function | unknown function | 1 | 48905 | 49030 |
| YP_008126692.1 | NC_021538_p102 | hypothetical protein | phrog_28092 | unknown function | unknown function | 1 | 56748 | 57050 |
| YP_008126673.1 | NC_021538_p83 | hypothetical protein | phrog_4396 | unknown function | unknown function | 1 | 52254 | 52382 |
| YP_008126616.1 | NC_021538_p26 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 25315 | 25953 |
| YP_008126637.1 | NC_021538_p47 | HTH DNA binding domain (Cro) | phrog_3 | transcriptional repressor | transcription regulation | 1 | 36451 | 36663 |
| YP_008126656.1 | NC_021538_p66 | hypothetical protein | phrog_5168 | unknown function | unknown function | 1 | 43280 | 43744 |
| YP_008126608.1 | NC_021538_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 14721 | 16430 |
| YP_008126668.1 | NC_021538_p78 | hypothetical protein | phrog_2730 | unknown function | unknown function | 1 | 50803 | 51006 |
| YP_008126601.1 | NC_021538_p11 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 6948 | 7352 |
| YP_008126634.1 | NC_021538_p44 | integrase, (Y-int) | phrog_1 | integrase | integration and excision | 1 | 33592 | 34893 |
| YP_008126664.1 | NC_021538_p74 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 49242 | 50147 |
| YP_008126611.1 | NC_021538_p21 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 19082 | 21619 |
| YP_008126625.1 | NC_021538_p35 | lysin B | phrog_102 | endolysin | lysis | 1 | 29517 | 30518 |
| YP_008126604.1 | NC_021538_p14 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8408 | 8959 |
| YP_008126651.1 | NC_021538_p61 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 41920 | 42201 |
| YP_008126635.1 | NC_021538_p45 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 34975 | 35427 |
| YP_008126663.1 | NC_021538_p73 | hypothetical protein | phrog_5500 | unknown function | unknown function | 1 | 49027 | 49245 |
| YP_008126617.1 | NC_021538_p27 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 25950 | 26804 |
| YP_008126621.1 | NC_021538_p31 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 27602 | 27754 |
| YP_008126659.1 | NC_021538_p69 | DNA methylase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 45077 | 48589 |
| YP_008126695.1 | NC_021538_p105 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 58721 | 58927 |
| YP_008126647.1 | NC_021538_p57 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 40322 | 40603 |
| YP_008126658.1 | NC_021538_p68 | HNH endonuclease domain protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44715 | 45080 |
| YP_008126691.1 | NC_021538_p101 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 56590 | 56751 |
| YP_008126648.1 | NC_021538_p58 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 40600 | 40947 |
| YP_008126622.1 | NC_021538_p32 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 27828 | 28049 |
| YP_008126629.1 | NC_021538_p39 | DnaQ-like protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 31381 | 32202 |
| YP_008126652.1 | NC_021538_p62 | HTH DNA binding protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 42198 | 42563 |
| YP_008126624.1 | NC_021538_p34 | lysin A | phrog_700 | endolysin | lysis | 1 | 28216 | 29517 |
| YP_008126633.1 | NC_021538_p43 | DNA binding domain protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 32966 | 33160 |
| YP_008126598.1 | NC_021538_p8 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 5928 | 6299 |
| YP_008126679.1 | NC_021538_p89 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 53454 | 53594 |
| YP_008126619.1 | NC_021538_p29 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 27153 | 27449 |
| YP_008126669.1 | NC_021538_p79 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 51003 | 51203 |
| YP_008126597.1 | NC_021538_p7 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5007 | 5915 |
| YP_008126606.1 | NC_021538_p16 | tapemeasure | phrog_1942 | tail length tape measure protein | tail | 1 | 9901 | 13389 |
| YP_008126681.1 | NC_021538_p91 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 53770 | 53931 |
| YP_008126678.1 | NC_021538_p88 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 53278 | 53457 |
| YP_008126612.1 | NC_021538_p22 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 21616 | 23502 |
| YP_008126665.1 | NC_021538_p75 | hypothetical protein | phrog_4296 | unknown function | unknown function | 1 | 50144 | 50506 |
| YP_008126594.1 | NC_021538_p4 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2198 | 3619 |
| YP_008126676.1 | NC_021538_p86 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 52824 | 53018 |
| YP_008126610.1 | NC_021538_p20 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 18234 | 19085 |
| YP_008126643.1 | NC_021538_p53 | hypothetical protein | phrog_27299 | unknown function | unknown function | 1 | 38833 | 39057 |
| YP_008126645.1 | NC_021538_p55 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 39394 | 39636 |
| YP_008126672.1 | NC_021538_p82 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 51811 | 52257 |
| YP_008126666.1 | NC_021538_p76 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 50499 | 50723 |
| YP_008126599.1 | NC_021538_p9 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6296 | 6625 |
| YP_008126641.1 | NC_021538_p51 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 38265 | 38648 |
| YP_008126683.1 | NC_021538_p93 | GIY-YIG endonuclease | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 54041 | 54568 |
| YP_008126595.1 | NC_021538_p5 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 3603 | 4328 |
| YP_008126630.1 | NC_021538_p40 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 32218 | 32508 |
| YP_008126618.1 | NC_021538_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26865 | 27005 |
| YP_008126607.1 | NC_021538_p17 | transposase | phrog_506 | transposase | integration and excision | -1 | 13390 | 14610 |
| YP_008126694.1 | NC_021538_p104 | hypothetical protein | phrog_26719 | unknown function | unknown function | 1 | 58503 | 58718 |
| YP_008126674.1 | NC_021538_p84 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 52418 | 52702 |
| YP_008126661.1 | NC_021538_p71 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 48732 | 48908 |
| YP_008126655.1 | NC_021538_p65 | hypothetical protein | phrog_2060 | DNA methyltransferase | other | 1 | 42942 | 43283 |
| YP_008126592.1 | NC_021538_p2 | hypothetical protein | phrog_4479 | terminase small subunit | head and packaging | 1 | 444 | 698 |
| YP_008126591.1 | NC_021538_p1 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41 | 373 |
| YP_008126690.1 | NC_021538_p100 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 56355 | 56597 |
| YP_008126646.1 | NC_021538_p56 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 39633 | 40247 |
| YP_008126632.1 | NC_021538_p42 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 32765 | 32914 |
| YP_008126605.1 | NC_021538_p15 | HNH endonuclease | phrog_3593 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9341 | 9901 |
| YP_008126677.1 | NC_021538_p87 | hypothetical protein | phrog_6625 | unknown function | unknown function | 1 | 53018 | 53281 |
| YP_008126631.1 | NC_021538_p41 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 32501 | 32593 |
| YP_008126675.1 | NC_021538_p85 | hypothetical protein | phrog_4152 | unknown function | unknown function | 1 | 52699 | 52827 |
| YP_008126685.1 | NC_021538_p95 | hypothetical protein | phrog_33189 | unknown function | unknown function | 1 | 55277 | 55381 |
| YP_008126654.1 | NC_021538_p64 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 42715 | 42945 |
| YP_008126640.1 | NC_021538_p50 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 38024 | 38221 |
| YP_008126620.1 | NC_021538_p30 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 27456 | 27605 |
| YP_008126593.1 | NC_021538_p3 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 670 | 2157 |
| YP_008126653.1 | NC_021538_p63 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 42560 | 42715 |
| YP_008126682.1 | NC_021538_p92 | hypothetical protein | phrog_6194 | unknown function | unknown function | 1 | 53928 | 54044 |
| YP_008126660.1 | NC_021538_p70 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 48586 | 48735 |
| YP_008126650.1 | NC_021538_p60 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 41411 | 41923 |
| YP_008126636.1 | NC_021538_p46 | immunity repressor | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 35691 | 36416 |
| YP_008126688.1 | NC_021538_p98 | hypothetical protein | phrog_3813 | unknown function | unknown function | 1 | 55703 | 55960 |
| YP_008126693.1 | NC_021538_p103 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 57057 | 58493 |
| YP_008126657.1 | NC_021538_p67 | hypothetical protein | phrog_1366 | unknown function | unknown function | 1 | 43741 | 44718 |
| YP_008126602.1 | NC_021538_p12 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7462 | 8271 |
| YP_008126639.1 | NC_021538_p49 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 37722 | 37937 |
| YP_008126687.1 | NC_021538_p97 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 55548 | 55706 |
| YP_008126609.1 | NC_021538_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16488 | 18197 |
| YP_008126670.1 | NC_021538_p80 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 51187 | 51525 |
| YP_008126638.1 | NC_021538_p48 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 36721 | 37725 |
| YP_008126680.1 | NC_021538_p90 | hypothetical protein | phrog_4126 | unknown function | unknown function | 1 | 53591 | 53773 |
| YP_008126628.1 | NC_021538_p38 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 31161 | 31394 |
| YP_008126615.1 | NC_021538_p25 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 25047 | 25301 |
| YP_008126671.1 | NC_021538_p81 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 51522 | 51818 |
| YP_008126627.1 | NC_021538_p37 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 30762 | 31136 |
| YP_008126689.1 | NC_021538_p99 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 55957 | 56358 |
| YP_008126642.1 | NC_021538_p52 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 38645 | 38836 |
| YP_008126696.1 | NC_021538_p106 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 58924 | 59535 |
| YP_008126623.1 | NC_021538_p33 | hypothetical protein | phrog_5492 | unknown function | unknown function | 1 | 28046 | 28219 |
| YP_008126667.1 | NC_021538_p77 | hypothetical protein | phrog_9299 | unknown function | unknown function | 1 | 50720 | 50803 |
| YP_008126613.1 | NC_021538_p23 | minor tail protein | phrog_2106 | minor tail protein | tail | 1 | 23499 | 24665 |
| YP_008126686.1 | NC_021538_p96 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 55378 | 55542 |
| YP_008126649.1 | NC_021538_p59 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 40944 | 41441 |
| YP_008126644.1 | NC_021538_p54 | hypothetical protein | phrog_24657 | unknown function | unknown function | 1 | 39054 | 39401 |
| YP_008126684.1 | NC_021538_p94 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 54565 | 55236 |
| YP_008126614.1 | NC_021538_p24 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24683 | 25024 |
| YP_008126600.1 | NC_021538_p10 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6632 | 6958 |