| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021540 |
Definition |
Vibrio phage JA-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
69278 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
34.55 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008126832.1 | NC_021540_p69 | hypothetical protein | phrog_11073 | unknown function | unknown function | 1 | 63990 | 64127 |
| YP_008126773.1 | NC_021540_p10 | DNA-directed RNA polymerase RNAP1 | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4749 | 5690 |
| YP_008126818.1 | NC_021540_p55 | hypothetical protein | phrog_2646 | unknown function | unknown function | -1 | 47346 | 47753 |
| YP_008126819.1 | NC_021540_p56 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 47763 | 49871 |
| YP_008126812.1 | NC_021540_p49 | hypothetical protein | phrog_14094 | unknown function | unknown function | 1 | 33925 | 34212 |
| YP_008126828.1 | NC_021540_p65 | phage minor structural protein | phrog_22896 | tail protein | tail | -1 | 57351 | 59777 |
| YP_008126838.1 | NC_021540_p75 | hypothetical protein | phrog_21771 | unknown function | unknown function | 1 | 65499 | 65624 |
| YP_008126805.1 | NC_021540_p42 | hypothetical protein | phrog_2573 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 27507 | 28505 |
| YP_008126834.1 | NC_021540_p71 | hypothetical protein | phrog_23035 | unknown function | unknown function | 1 | 64734 | 64847 |
| YP_008126836.1 | NC_021540_p73 | hypothetical protein | phrog_23512 | unknown function | unknown function | 1 | 65017 | 65223 |
| YP_008126779.1 | NC_021540_p16 | hypothetical protein | phrog_18917 | unknown function | unknown function | 1 | 9780 | 10076 |
| YP_008126809.1 | NC_021540_p46 | hypothetical protein | phrog_27540 | unknown function | unknown function | 1 | 30709 | 30951 |
| YP_008126782.1 | NC_021540_p19 | lipoprotein | phrog_21339 | lipoprotein | other | 1 | 11026 | 11328 |
| YP_008126831.1 | NC_021540_p68 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 63073 | 63750 |
| YP_008126800.1 | NC_021540_p37 | hypothetical protein | phrog_22607 | unknown function | unknown function | 1 | 22630 | 22797 |
| YP_008126815.1 | NC_021540_p52 | crossover junction endodeoxyribonuclease RusA | phrog_21721 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 35737 | 36534 |
| YP_008126777.1 | NC_021540_p14 | hypothetical protein | phrog_17135 | unknown function | unknown function | 1 | 8974 | 9246 |
| YP_008126796.1 | NC_021540_p33 | hypothetical protein | phrog_16335 | ATPase | other | 1 | 19548 | 19868 |
| YP_008126788.1 | NC_021540_p25 | hypothetical protein | phrog_18142 | unknown function | unknown function | 1 | 15050 | 15448 |
| YP_008126811.1 | NC_021540_p48 | hypothetical protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 31999 | 33921 |
| YP_008126817.1 | NC_021540_p54 | hypothetical protein | phrog_17660 | unknown function | unknown function | -1 | 46075 | 47343 |
| YP_008126781.1 | NC_021540_p18 | PF10947 family protein | phrog_18330 | unknown function | unknown function | 1 | 10610 | 11029 |
| YP_008126801.1 | NC_021540_p38 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 23275 | 24465 |
| YP_008126825.1 | NC_021540_p62 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 53746 | 55863 |
| YP_008126780.1 | NC_021540_p17 | hypothetical protein | phrog_37301 | unknown function | unknown function | 1 | 10472 | 10600 |
| YP_008126823.1 | NC_021540_p60 | hypothetical protein | phrog_2120 | tail length tape measure protein | tail | -1 | 52340 | 53431 |
| YP_008126804.1 | NC_021540_p41 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 26855 | 27388 |
| YP_008126820.1 | NC_021540_p57 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | -1 | 49894 | 50370 |
| YP_008126808.1 | NC_021540_p45 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 29688 | 30701 |
| YP_008126766.1 | NC_021540_p3 | hypothetical protein | phrog_2978 | unknown function | unknown function | 1 | 1939 | 2217 |
| YP_008126816.1 | NC_021540_p53 | viron-encapsulated RNA polymerase | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 37007 | 46075 |
| YP_008126765.1 | NC_021540_p2 | hypothetical protein | phrog_35822 | unknown function | unknown function | 1 | 1305 | 1532 |
| YP_008126814.1 | NC_021540_p51 | ssDNA binding protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 35015 | 35737 |
| YP_008126787.1 | NC_021540_p24 | hypothetical protein | phrog_21764 | unknown function | unknown function | 1 | 14659 | 14970 |
| YP_008126771.1 | NC_021540_p8 | hypothetical protein | phrog_18082 | unknown function | unknown function | 1 | 3422 | 3655 |
| YP_008126785.1 | NC_021540_p22 | hypothetical protein | phrog_21600 | unknown function | unknown function | 1 | 12796 | 13011 |
| YP_008126826.1 | NC_021540_p63 | hypothetical protein | phrog_18138 | unknown function | unknown function | 1 | 55933 | 56220 |
| YP_008126776.1 | NC_021540_p13 | hypothetical protein | phrog_20578 | unknown function | unknown function | 1 | 7901 | 8089 |
| YP_008126783.1 | NC_021540_p20 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 11325 | 12176 |
| YP_008126791.1 | NC_021540_p28 | PF11753 family protein | phrog_236 | nucleotide kinase | other | 1 | 16400 | 16693 |
| YP_008126784.1 | NC_021540_p21 | hypothetical protein | phrog_19571 | unknown function | unknown function | 1 | 12372 | 12530 |
| YP_008126837.1 | NC_021540_p74 | hypothetical protein | phrog_21733 | unknown function | unknown function | 1 | 65321 | 65512 |
| YP_008126824.1 | NC_021540_p61 | hypothetical protein | phrog_21748 | unknown function | unknown function | -1 | 53435 | 53746 |
| YP_008126830.1 | NC_021540_p67 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 60468 | 63080 |
| YP_008126835.1 | NC_021540_p72 | hypothetical protein | phrog_26832 | unknown function | unknown function | 1 | 64847 | 65020 |
| YP_008126789.1 | NC_021540_p26 | hypothetical protein | phrog_21935 | unknown function | unknown function | 1 | 15761 | 15901 |
| YP_008126806.1 | NC_021540_p43 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 28581 | 29189 |
| YP_008126790.1 | NC_021540_p27 | hypothetical protein | phrog_18469 | unknown function | unknown function | 1 | 15948 | 16403 |
| YP_008126822.1 | NC_021540_p59 | N4-gp56 family major capsid protein | phrog_1357 | major head protein | head and packaging | -1 | 51014 | 52327 |
| YP_008126793.1 | NC_021540_p30 | hypothetical protein | phrog_19808 | unknown function | unknown function | 1 | 16892 | 17533 |
| YP_008126772.1 | NC_021540_p9 | hypothetical protein | phrog_21216 | unknown function | unknown function | 1 | 3711 | 3977 |
| YP_008126767.1 | NC_021540_p4 | hypothetical protein | phrog_21816 | unknown function | unknown function | 1 | 2229 | 2465 |
| YP_008126813.1 | NC_021540_p50 | AAA domain protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 34216 | 34953 |
| YP_008126829.1 | NC_021540_p66 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | -1 | 59774 | 60460 |
| YP_008126827.1 | NC_021540_p64 | hypothetical protein | phrog_15833 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 56703 | 57326 |
| YP_008126839.1 | NC_021540_p76 | hypothetical protein | phrog_10915 | unknown function | unknown function | 1 | 66800 | 67039 |
| YP_008126802.1 | NC_021540_p39 | hypothetical protein | phrog_16775 | unknown function | unknown function | 1 | 24467 | 24916 |
| YP_008126810.1 | NC_021540_p47 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 31270 | 31905 |
| YP_008126775.1 | NC_021540_p12 | DNA-directed RNA polymerase RNAP2 | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5924 | 7150 |
| YP_008126770.1 | NC_021540_p7 | hypothetical protein | phrog_21563 | unknown function | unknown function | 1 | 3120 | 3308 |
| YP_008126803.1 | NC_021540_p40 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 25031 | 26710 |
| YP_008126821.1 | NC_021540_p58 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 50373 | 50957 |
| YP_008126841.1 | NC_021540_p78 | hypothetical protein | phrog_27835 | unknown function | unknown function | 1 | 67881 | 67994 |
| YP_008126792.1 | NC_021540_p29 | hypothetical protein | phrog_20360 | unknown function | unknown function | 1 | 16696 | 16878 |
| YP_008126799.1 | NC_021540_p36 | metallopeptidase domain protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 21349 | 22578 |
| YP_008126798.1 | NC_021540_p35 | hypothetical protein | phrog_1297 | ATPase | other | 1 | 20561 | 21292 |
| YP_008126797.1 | NC_021540_p34 | HNH homing endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 19995 | 20381 |
| YP_008126795.1 | NC_021540_p32 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 18892 | 19467 |
| YP_008126769.1 | NC_021540_p6 | hypothetical protein | phrog_26780 | unknown function | unknown function | 1 | 2945 | 3133 |
| YP_008126768.1 | NC_021540_p5 | hypothetical protein | phrog_24771 | unknown function | unknown function | 1 | 2691 | 2948 |
| YP_008126774.1 | NC_021540_p11 | hypothetical protein | phrog_19932 | unknown function | unknown function | 1 | 5690 | 5905 |
| YP_008126833.1 | NC_021540_p70 | hypothetical protein | phrog_11073 | unknown function | unknown function | 1 | 64450 | 64632 |
| YP_008126794.1 | NC_021540_p31 | hypothetical protein | phrog_6596 | unknown function | unknown function | 1 | 17594 | 18049 |
| YP_008126786.1 | NC_021540_p23 | hypothetical protein | phrog_11852 | unknown function | unknown function | 1 | 13318 | 13644 |
| YP_008126807.1 | NC_021540_p44 | phosphoribosyl-ATP diphosphatase | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 29239 | 29688 |
| YP_008126778.1 | NC_021540_p15 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | -1 | 9232 | 9756 |
| YP_008126764.1 | NC_021540_p1 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 808 | 1218 |
| YP_008126840.1 | NC_021540_p77 | hypothetical protein | phrog_10915 | unknown function | unknown function | 1 | 67030 | 67251 |
| YP_008126842.1 | NC_021540_p79 | hypothetical protein | phrog_21584 | unknown function | unknown function | -1 | 68192 | 68725 |