Genomic map of Vibrio phage JA-1 (NC_021540)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021540
Definition
Vibrio phage JA-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
69278
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
79
%GC
34.55
Number of singletons
0
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008126832.1 NC_021540_p69 hypothetical protein phrog_11073 unknown function unknown function 1 63990 64127
YP_008126773.1 NC_021540_p10 DNA-directed RNA polymerase RNAP1 phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism 1 4749 5690
YP_008126818.1 NC_021540_p55 hypothetical protein phrog_2646 unknown function unknown function -1 47346 47753
YP_008126819.1 NC_021540_p56 hypothetical protein phrog_2220 unknown function unknown function -1 47763 49871
YP_008126812.1 NC_021540_p49 hypothetical protein phrog_14094 unknown function unknown function 1 33925 34212
YP_008126828.1 NC_021540_p65 phage minor structural protein phrog_22896 tail protein tail -1 57351 59777
YP_008126838.1 NC_021540_p75 hypothetical protein phrog_21771 unknown function unknown function 1 65499 65624
YP_008126805.1 NC_021540_p42 hypothetical protein phrog_2573 DNA polymerase DNA, RNA and nucleotide metabolism 1 27507 28505
YP_008126834.1 NC_021540_p71 hypothetical protein phrog_23035 unknown function unknown function 1 64734 64847
YP_008126836.1 NC_021540_p73 hypothetical protein phrog_23512 unknown function unknown function 1 65017 65223
YP_008126779.1 NC_021540_p16 hypothetical protein phrog_18917 unknown function unknown function 1 9780 10076
YP_008126809.1 NC_021540_p46 hypothetical protein phrog_27540 unknown function unknown function 1 30709 30951
YP_008126782.1 NC_021540_p19 lipoprotein phrog_21339 lipoprotein other 1 11026 11328
YP_008126831.1 NC_021540_p68 hypothetical protein phrog_2109 unknown function unknown function -1 63073 63750
YP_008126800.1 NC_021540_p37 hypothetical protein phrog_22607 unknown function unknown function 1 22630 22797
YP_008126815.1 NC_021540_p52 crossover junction endodeoxyribonuclease RusA phrog_21721 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 35737 36534
YP_008126777.1 NC_021540_p14 hypothetical protein phrog_17135 unknown function unknown function 1 8974 9246
YP_008126796.1 NC_021540_p33 hypothetical protein phrog_16335 ATPase other 1 19548 19868
YP_008126788.1 NC_021540_p25 hypothetical protein phrog_18142 unknown function unknown function 1 15050 15448
YP_008126811.1 NC_021540_p48 hypothetical protein phrog_2135 DNA primase DNA, RNA and nucleotide metabolism 1 31999 33921
YP_008126817.1 NC_021540_p54 hypothetical protein phrog_17660 unknown function unknown function -1 46075 47343
YP_008126781.1 NC_021540_p18 PF10947 family protein phrog_18330 unknown function unknown function 1 10610 11029
YP_008126801.1 NC_021540_p38 DNA helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 23275 24465
YP_008126825.1 NC_021540_p62 portal protein phrog_1216 portal protein head and packaging -1 53746 55863
YP_008126780.1 NC_021540_p17 hypothetical protein phrog_37301 unknown function unknown function 1 10472 10600
YP_008126823.1 NC_021540_p60 hypothetical protein phrog_2120 tail length tape measure protein tail -1 52340 53431
YP_008126804.1 NC_021540_p41 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 26855 27388
YP_008126820.1 NC_021540_p57 hypothetical protein phrog_2050 virion structural protein head and packaging -1 49894 50370
YP_008126808.1 NC_021540_p45 hypothetical protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism 1 29688 30701
YP_008126766.1 NC_021540_p3 hypothetical protein phrog_2978 unknown function unknown function 1 1939 2217
YP_008126816.1 NC_021540_p53 viron-encapsulated RNA polymerase phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism -1 37007 46075
YP_008126765.1 NC_021540_p2 hypothetical protein phrog_35822 unknown function unknown function 1 1305 1532
YP_008126814.1 NC_021540_p51 ssDNA binding protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 35015 35737
YP_008126787.1 NC_021540_p24 hypothetical protein phrog_21764 unknown function unknown function 1 14659 14970
YP_008126771.1 NC_021540_p8 hypothetical protein phrog_18082 unknown function unknown function 1 3422 3655
YP_008126785.1 NC_021540_p22 hypothetical protein phrog_21600 unknown function unknown function 1 12796 13011
YP_008126826.1 NC_021540_p63 hypothetical protein phrog_18138 unknown function unknown function 1 55933 56220
YP_008126776.1 NC_021540_p13 hypothetical protein phrog_20578 unknown function unknown function 1 7901 8089
YP_008126783.1 NC_021540_p20 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 11325 12176
YP_008126791.1 NC_021540_p28 PF11753 family protein phrog_236 nucleotide kinase other 1 16400 16693
YP_008126784.1 NC_021540_p21 hypothetical protein phrog_19571 unknown function unknown function 1 12372 12530
YP_008126837.1 NC_021540_p74 hypothetical protein phrog_21733 unknown function unknown function 1 65321 65512
YP_008126824.1 NC_021540_p61 hypothetical protein phrog_21748 unknown function unknown function -1 53435 53746
YP_008126830.1 NC_021540_p67 terminase large subunit phrog_38 terminase large subunit head and packaging -1 60468 63080
YP_008126835.1 NC_021540_p72 hypothetical protein phrog_26832 unknown function unknown function 1 64847 65020
YP_008126789.1 NC_021540_p26 hypothetical protein phrog_21935 unknown function unknown function 1 15761 15901
YP_008126806.1 NC_021540_p43 hypothetical protein phrog_1965 unknown function unknown function 1 28581 29189
YP_008126790.1 NC_021540_p27 hypothetical protein phrog_18469 unknown function unknown function 1 15948 16403
YP_008126822.1 NC_021540_p59 N4-gp56 family major capsid protein phrog_1357 major head protein head and packaging -1 51014 52327
YP_008126793.1 NC_021540_p30 hypothetical protein phrog_19808 unknown function unknown function 1 16892 17533
YP_008126772.1 NC_021540_p9 hypothetical protein phrog_21216 unknown function unknown function 1 3711 3977
YP_008126767.1 NC_021540_p4 hypothetical protein phrog_21816 unknown function unknown function 1 2229 2465
YP_008126813.1 NC_021540_p50 AAA domain protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 34216 34953
YP_008126829.1 NC_021540_p66 hypothetical protein phrog_2125 virion structural protein head and packaging -1 59774 60460
YP_008126827.1 NC_021540_p64 hypothetical protein phrog_15833 DNA polymerase DNA, RNA and nucleotide metabolism 1 56703 57326
YP_008126839.1 NC_021540_p76 hypothetical protein phrog_10915 unknown function unknown function 1 66800 67039
YP_008126802.1 NC_021540_p39 hypothetical protein phrog_16775 unknown function unknown function 1 24467 24916
YP_008126810.1 NC_021540_p47 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 31270 31905
YP_008126775.1 NC_021540_p12 DNA-directed RNA polymerase RNAP2 phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism 1 5924 7150
YP_008126770.1 NC_021540_p7 hypothetical protein phrog_21563 unknown function unknown function 1 3120 3308
YP_008126803.1 NC_021540_p40 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 25031 26710
YP_008126821.1 NC_021540_p58 hypothetical protein phrog_2130 unknown function unknown function -1 50373 50957
YP_008126841.1 NC_021540_p78 hypothetical protein phrog_27835 unknown function unknown function 1 67881 67994
YP_008126792.1 NC_021540_p29 hypothetical protein phrog_20360 unknown function unknown function 1 16696 16878
YP_008126799.1 NC_021540_p36 metallopeptidase domain protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism 1 21349 22578
YP_008126798.1 NC_021540_p35 hypothetical protein phrog_1297 ATPase other 1 20561 21292
YP_008126797.1 NC_021540_p34 HNH homing endonuclease phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 19995 20381
YP_008126795.1 NC_021540_p32 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 18892 19467
YP_008126769.1 NC_021540_p6 hypothetical protein phrog_26780 unknown function unknown function 1 2945 3133
YP_008126768.1 NC_021540_p5 hypothetical protein phrog_24771 unknown function unknown function 1 2691 2948
YP_008126774.1 NC_021540_p11 hypothetical protein phrog_19932 unknown function unknown function 1 5690 5905
YP_008126833.1 NC_021540_p70 hypothetical protein phrog_11073 unknown function unknown function 1 64450 64632
YP_008126794.1 NC_021540_p31 hypothetical protein phrog_6596 unknown function unknown function 1 17594 18049
YP_008126786.1 NC_021540_p23 hypothetical protein phrog_11852 unknown function unknown function 1 13318 13644
YP_008126807.1 NC_021540_p44 phosphoribosyl-ATP diphosphatase phrog_671 nucleotide pyrophosphohydrolase other 1 29239 29688
YP_008126778.1 NC_021540_p15 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis -1 9232 9756
YP_008126764.1 NC_021540_p1 hypothetical protein phrog_289 GTP-binding domain other 1 808 1218
YP_008126840.1 NC_021540_p77 hypothetical protein phrog_10915 unknown function unknown function 1 67030 67251
YP_008126842.1 NC_021540_p79 hypothetical protein phrog_21584 unknown function unknown function -1 68192 68725