| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021556 |
Definition |
Mycobacterium phage Leo, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Liefievirus; unclassified Liefievirus. |
DB of origin |
REFSEQ |
Length |
39981 |
Host Name |
Mycobacterium tuberculosis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
66.86 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008129770.1 | NC_021556_p15 | hypothetical protein | phrog_3656 | tail assembly chaperone | tail | 1 | 11103 | 11480 |
| YP_008129758.1 | NC_021556_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 1905 | 3419 |
| YP_008129811.1 | NC_021556_p56 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 38522 | 38857 |
| YP_008129787.1 | NC_021556_p32 | integrase | phrog_216 | integrase | integration and excision | -1 | 27479 | 28150 |
| YP_008129778.1 | NC_021556_p23 | hypothetical protein | phrog_7598 | unknown function | unknown function | 1 | 22608 | 22928 |
| YP_008129812.1 | NC_021556_p57 | HNH endonuclease | phrog_7328 | unknown function | unknown function | 1 | 38956 | 39198 |
| YP_008129771.1 | NC_021556_p16 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 11480 | 15493 |
| YP_008129810.1 | NC_021556_p55 | hypothetical protein | phrog_5505 | unknown function | unknown function | 1 | 38308 | 38490 |
| YP_008129764.1 | NC_021556_p9 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 8330 | 8827 |
| YP_008129761.1 | NC_021556_p6 | hypothetical protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6531 | 7073 |
| YP_008129809.1 | NC_021556_p54 | hypothetical protein | phrog_5436 | unknown function | unknown function | 1 | 37517 | 38308 |
| YP_008129783.1 | NC_021556_p28 | lysin B | phrog_102 | endolysin | lysis | 1 | 24959 | 26167 |
| YP_008129803.1 | NC_021556_p48 | RuvC | phrog_7576 | unknown function | unknown function | 1 | 35019 | 35459 |
| YP_008129767.1 | NC_021556_p12 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9430 | 9873 |
| YP_008129785.1 | NC_021556_p30 | hypothetical protein | phrog_1177 | unknown function | unknown function | 1 | 26629 | 26868 |
| YP_008129780.1 | NC_021556_p25 | hypothetical protein | phrog_9511 | unknown function | unknown function | 1 | 23113 | 23388 |
| YP_008129802.1 | NC_021556_p47 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 34678 | 35022 |
| YP_008129766.1 | NC_021556_p11 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 9170 | 9433 |
| YP_008129807.1 | NC_021556_p52 | hypothetical protein | phrog_7600 | unknown function | unknown function | 1 | 36676 | 37173 |
| YP_008129776.1 | NC_021556_p21 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 20024 | 20458 |
| YP_008129801.1 | NC_021556_p46 | hypothetical protein | phrog_7826 | unknown function | unknown function | 1 | 34361 | 34681 |
| YP_008129791.1 | NC_021556_p36 | hypothetical protein | phrog_10116 | unknown function | unknown function | 1 | 29390 | 29572 |
| YP_008129797.1 | NC_021556_p42 | hypothetical protein | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 31630 | 33054 |
| YP_008129782.1 | NC_021556_p27 | lysin A | phrog_880 | endolysin | lysis | 1 | 23643 | 24959 |
| YP_008129813.1 | NC_021556_p58 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39222 | 39548 |
| YP_008129808.1 | NC_021556_p53 | hypothetical protein | phrog_11054 | unknown function | unknown function | 1 | 37263 | 37514 |
| YP_008129793.1 | NC_021556_p38 | hypothetical protein | phrog_7486 | unknown function | unknown function | 1 | 29916 | 30065 |
| YP_008129775.1 | NC_021556_p20 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 18877 | 20013 |
| YP_008129790.1 | NC_021556_p35 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 28854 | 29390 |
| YP_008129781.1 | NC_021556_p26 | hypothetical protein | phrog_8517 | unknown function | unknown function | 1 | 23388 | 23582 |
| YP_008129779.1 | NC_021556_p24 | hypothetical protein | phrog_8923 | unknown function | unknown function | 1 | 22931 | 23113 |
| YP_008129765.1 | NC_021556_p10 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 8827 | 9183 |
| YP_008129798.1 | NC_021556_p43 | hypothetical protein | phrog_7227 | unknown function | unknown function | 1 | 33057 | 33590 |
| YP_008129799.1 | NC_021556_p44 | hypothetical protein | phrog_3926 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 33791 | 34162 |
| YP_008129756.1 | NC_021556_p1 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 60 | 404 |
| YP_008129788.1 | NC_021556_p33 | RDF protein | phrog_7506 | recombination directionality factor | integration and excision | 1 | 28151 | 28396 |
| YP_008129794.1 | NC_021556_p39 | hypothetical protein | phrog_7392 | unknown function | unknown function | 1 | 30065 | 30415 |
| YP_008129804.1 | NC_021556_p49 | RuvC | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 35456 | 36046 |
| YP_008129773.1 | NC_021556_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16656 | 18419 |
| YP_008129768.1 | NC_021556_p13 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 9870 | 10484 |
| YP_008129805.1 | NC_021556_p50 | hypothetical protein | phrog_13172 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36019 | 36153 |
| YP_008129796.1 | NC_021556_p41 | hypothetical protein | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 30548 | 31633 |
| YP_008129762.1 | NC_021556_p7 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7119 | 8054 |
| YP_008129777.1 | NC_021556_p22 | minor tail protein | phrog_7565 | minor tail protein | tail | 1 | 20458 | 22593 |
| YP_008129763.1 | NC_021556_p8 | hypothetical protein | phrog_3101 | unknown function | unknown function | 1 | 8091 | 8318 |
| YP_008129760.1 | NC_021556_p5 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 6206 | 6412 |
| YP_008129792.1 | NC_021556_p37 | ASC-1-like protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 29569 | 29919 |
| YP_008129814.1 | NC_021556_p59 | hypothetical protein | phrog_3468 | unknown function | unknown function | 1 | 39642 | 39863 |
| YP_008129769.1 | NC_021556_p14 | virion protein | phrog_1861 | unknown function | unknown function | 1 | 10585 | 11094 |
| YP_008129795.1 | NC_021556_p40 | hypothetical protein | phrog_6734 | unknown function | unknown function | 1 | 30399 | 30551 |
| YP_008129789.1 | NC_021556_p34 | hypothetical protein | phrog_5081 | unknown function | unknown function | 1 | 28393 | 28791 |
| YP_008129757.1 | NC_021556_p2 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 376 | 1908 |
| YP_008129806.1 | NC_021556_p51 | hypothetical protein | phrog_9043 | unknown function | unknown function | 1 | 36174 | 36665 |
| YP_008129774.1 | NC_021556_p19 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 18419 | 18880 |
| YP_008129772.1 | NC_021556_p17 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 15493 | 16665 |
| YP_008129800.1 | NC_021556_p45 | hypothetical protein | phrog_21970 | unknown function | unknown function | 1 | 34182 | 34364 |
| YP_008129784.1 | NC_021556_p29 | hypothetical protein | phrog_7198 | holin | lysis | 1 | 26193 | 26543 |
| YP_008129786.1 | NC_021556_p31 | hypothetical protein | phrog_798 | unknown function | unknown function | 1 | 26865 | 27482 |
| YP_008129759.1 | NC_021556_p4 | hypothetical protein | phrog_1752 | head maturation protease | head and packaging | 1 | 3420 | 6209 |