Genomic map of Rhizobium phage RR1-B (NC_021557)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021557
Definition
Rhizobium phage RR1-B genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
37378
Host Name
Rhizobium radiobacter
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
58.27
Number of singletons
13
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008129823.1 NC_021557_p9 hypothetical protein phrog_2030 transcriptional regulator transcription regulation 1 7173 7736
YP_008129853.1 NC_021557_p39 hypothetical protein singleton unknown function unknown function 1 25912 26073
YP_008129829.1 NC_021557_p15 hypothetical protein phrog_12607 nucleoside deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 9423 9857
YP_008129864.1 NC_021557_p50 hypothetical protein phrog_1348 tail fiber protein tail 1 34947 35537
YP_008129819.1 NC_021557_p5 chromosome partitioning protein parB phrog_3264 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 2661 3641
YP_008129865.1 NC_021557_p51 hypothetical protein singleton unknown function unknown function 1 35763 35987
YP_008129820.1 NC_021557_p6 hypothetical protein phrog_2345 transcriptional regulator transcription regulation 1 3641 4105
YP_008129856.1 NC_021557_p42 hypothetical protein phrog_46 baseplate hub tail 1 29107 29376
YP_008129846.1 NC_021557_p32 hypothetical protein singleton unknown function unknown function 1 22147 22617
YP_008129831.1 NC_021557_p17 hypothetical protein phrog_286 unknown function unknown function 1 10287 10733
YP_008129818.1 NC_021557_p4 hypothetical protein singleton unknown function unknown function 1 1976 2539
YP_008129816.1 NC_021557_p2 hypothetical protein phrog_769 transcriptional repressor transcription regulation 1 1423 1725
YP_008129847.1 NC_021557_p33 hypothetical protein phrog_209 portal protein head and packaging 1 22614 23105
YP_008129825.1 NC_021557_p11 hypothetical protein singleton unknown function unknown function 1 8097 8303
YP_008129845.1 NC_021557_p31 hypothetical protein singleton unknown function unknown function 1 21528 22052
YP_008129837.1 NC_021557_p23 hypothetical protein phrog_756 DNA binding protein DNA, RNA and nucleotide metabolism 1 13114 13617
YP_008129840.1 NC_021557_p26 head morphogenesis protein phrog_220 minor head protein and DNA pilot head and packaging 1 16765 18225
YP_008129857.1 NC_021557_p43 hypothetical protein phrog_52 tail protein tail 1 29343 30377
YP_008129839.1 NC_021557_p25 hypothetical protein phrog_113 portal protein head and packaging 1 15266 16684
YP_008129852.1 NC_021557_p38 hypothetical protein singleton unknown function unknown function 1 25571 25909
YP_008129835.1 NC_021557_p21 hypothetical protein phrog_12264 unknown function unknown function 1 12439 12876
YP_008129834.1 NC_021557_p20 hypothetical protein phrog_181 endolysin lysis 1 11615 12469
YP_008129822.1 NC_021557_p8 hypothetical protein phrog_296 DNA transposition protein integration and excision 1 6406 7173
YP_008129860.1 NC_021557_p46 hypothetical protein phrog_43 baseplate wedge subunit tail 1 31163 31570
YP_008129849.1 NC_021557_p35 tail sheath protein phrog_23 tail sheath tail 1 23344 24603
YP_008129826.1 NC_021557_p12 hypothetical protein singleton unknown function unknown function 1 8317 8592
YP_008129854.1 NC_021557_p40 hypothetical protein phrog_58 tail length tape measure protein tail 1 26149 28629
YP_008129821.1 NC_021557_p7 transposase phrog_310 transposase integration and excision 1 4102 6378
YP_008129832.1 NC_021557_p18 hypothetical protein phrog_7191 unknown function unknown function -1 10736 11053
YP_008129841.1 NC_021557_p27 virion morphogenesis protein phrog_26 tail completion or Neck1 protein connector 1 18329 18793
YP_008129851.1 NC_021557_p37 hypothetical protein singleton unknown function unknown function 1 25172 25489
YP_008129827.1 NC_021557_p13 host-nuclease inhibitor protein phrog_491 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 8622 9137
YP_008129824.1 NC_021557_p10 hypothetical protein phrog_2119 unknown function unknown function 1 7718 8107
YP_008129817.1 NC_021557_p3 hypothetical protein singleton unknown function unknown function 1 1722 1979
YP_008129850.1 NC_021557_p36 hypothetical protein phrog_55 head closure connector 1 24619 25131
YP_008129833.1 NC_021557_p19 hypothetical protein phrog_836 late transcriptional activator transcription regulation 1 11155 11532
YP_008129815.1 NC_021557_p1 repressor phrog_4 transcriptional repressor transcription regulation -1 486 1226
YP_008129828.1 NC_021557_p14 hypothetical protein singleton unknown function unknown function 1 9148 9426
YP_008129859.1 NC_021557_p45 PAAR repeat-containing protein phrog_281 PAAR motif of membran proteins moron, auxiliary metabolic gene and host takeover 1 30789 31052
YP_008129866.1 NC_021557_p52 adenine specific DNA methyltransferase phrog_56 DNA methyltransferase other 1 36152 36949
YP_008129855.1 NC_021557_p41 hypothetical protein phrog_76 tail protein tail 1 28634 29110
YP_008129842.1 NC_021557_p28 hypothetical protein phrog_976 head maturation protease head and packaging 1 19069 20190
YP_008129830.1 NC_021557_p16 hypothetical protein singleton unknown function unknown function 1 10021 10290
YP_008129863.1 NC_021557_p49 tail fiber domain-containing protein phrog_6202 tail fiber protein tail 1 33352 34950
YP_008129838.1 NC_021557_p24 hypothetical protein phrog_38 terminase large subunit head and packaging 1 13614 15269
YP_008129862.1 NC_021557_p48 hypothetical protein phrog_48 tail protein tail 1 32689 33348
YP_008129836.1 NC_021557_p22 hypothetical protein phrog_1193 hemolysin other 1 12873 13121
YP_008129848.1 NC_021557_p34 hypothetical protein phrog_895 unknown function unknown function 1 23119 23340
YP_008129844.1 NC_021557_p30 hypothetical protein phrog_1005 major head protein head and packaging 1 20571 21515
YP_008129843.1 NC_021557_p29 hypothetical protein phrog_673 head scaffolding protein head and packaging 1 20206 20541
YP_008129861.1 NC_021557_p47 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 31596 32696
YP_008129858.1 NC_021557_p44 hypothetical protein singleton unknown function unknown function 1 30358 30789