| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021557 |
Definition |
Rhizobium phage RR1-B genomic sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
37378 |
Host Name |
Rhizobium radiobacter |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
58.27 |
Number of singletons |
13 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008129823.1 | NC_021557_p9 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 7173 | 7736 |
| YP_008129853.1 | NC_021557_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25912 | 26073 |
| YP_008129829.1 | NC_021557_p15 | hypothetical protein | phrog_12607 | nucleoside deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 9423 | 9857 |
| YP_008129864.1 | NC_021557_p50 | hypothetical protein | phrog_1348 | tail fiber protein | tail | 1 | 34947 | 35537 |
| YP_008129819.1 | NC_021557_p5 | chromosome partitioning protein parB | phrog_3264 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 2661 | 3641 |
| YP_008129865.1 | NC_021557_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35763 | 35987 |
| YP_008129820.1 | NC_021557_p6 | hypothetical protein | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 3641 | 4105 |
| YP_008129856.1 | NC_021557_p42 | hypothetical protein | phrog_46 | baseplate hub | tail | 1 | 29107 | 29376 |
| YP_008129846.1 | NC_021557_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22147 | 22617 |
| YP_008129831.1 | NC_021557_p17 | hypothetical protein | phrog_286 | unknown function | unknown function | 1 | 10287 | 10733 |
| YP_008129818.1 | NC_021557_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1976 | 2539 |
| YP_008129816.1 | NC_021557_p2 | hypothetical protein | phrog_769 | transcriptional repressor | transcription regulation | 1 | 1423 | 1725 |
| YP_008129847.1 | NC_021557_p33 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 22614 | 23105 |
| YP_008129825.1 | NC_021557_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8097 | 8303 |
| YP_008129845.1 | NC_021557_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21528 | 22052 |
| YP_008129837.1 | NC_021557_p23 | hypothetical protein | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 13114 | 13617 |
| YP_008129840.1 | NC_021557_p26 | head morphogenesis protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 16765 | 18225 |
| YP_008129857.1 | NC_021557_p43 | hypothetical protein | phrog_52 | tail protein | tail | 1 | 29343 | 30377 |
| YP_008129839.1 | NC_021557_p25 | hypothetical protein | phrog_113 | portal protein | head and packaging | 1 | 15266 | 16684 |
| YP_008129852.1 | NC_021557_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25571 | 25909 |
| YP_008129835.1 | NC_021557_p21 | hypothetical protein | phrog_12264 | unknown function | unknown function | 1 | 12439 | 12876 |
| YP_008129834.1 | NC_021557_p20 | hypothetical protein | phrog_181 | endolysin | lysis | 1 | 11615 | 12469 |
| YP_008129822.1 | NC_021557_p8 | hypothetical protein | phrog_296 | DNA transposition protein | integration and excision | 1 | 6406 | 7173 |
| YP_008129860.1 | NC_021557_p46 | hypothetical protein | phrog_43 | baseplate wedge subunit | tail | 1 | 31163 | 31570 |
| YP_008129849.1 | NC_021557_p35 | tail sheath protein | phrog_23 | tail sheath | tail | 1 | 23344 | 24603 |
| YP_008129826.1 | NC_021557_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8317 | 8592 |
| YP_008129854.1 | NC_021557_p40 | hypothetical protein | phrog_58 | tail length tape measure protein | tail | 1 | 26149 | 28629 |
| YP_008129821.1 | NC_021557_p7 | transposase | phrog_310 | transposase | integration and excision | 1 | 4102 | 6378 |
| YP_008129832.1 | NC_021557_p18 | hypothetical protein | phrog_7191 | unknown function | unknown function | -1 | 10736 | 11053 |
| YP_008129841.1 | NC_021557_p27 | virion morphogenesis protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 18329 | 18793 |
| YP_008129851.1 | NC_021557_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25172 | 25489 |
| YP_008129827.1 | NC_021557_p13 | host-nuclease inhibitor protein | phrog_491 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 8622 | 9137 |
| YP_008129824.1 | NC_021557_p10 | hypothetical protein | phrog_2119 | unknown function | unknown function | 1 | 7718 | 8107 |
| YP_008129817.1 | NC_021557_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1722 | 1979 |
| YP_008129850.1 | NC_021557_p36 | hypothetical protein | phrog_55 | head closure | connector | 1 | 24619 | 25131 |
| YP_008129833.1 | NC_021557_p19 | hypothetical protein | phrog_836 | late transcriptional activator | transcription regulation | 1 | 11155 | 11532 |
| YP_008129815.1 | NC_021557_p1 | repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 486 | 1226 |
| YP_008129828.1 | NC_021557_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9148 | 9426 |
| YP_008129859.1 | NC_021557_p45 | PAAR repeat-containing protein | phrog_281 | PAAR motif of membran proteins | moron, auxiliary metabolic gene and host takeover | 1 | 30789 | 31052 |
| YP_008129866.1 | NC_021557_p52 | adenine specific DNA methyltransferase | phrog_56 | DNA methyltransferase | other | 1 | 36152 | 36949 |
| YP_008129855.1 | NC_021557_p41 | hypothetical protein | phrog_76 | tail protein | tail | 1 | 28634 | 29110 |
| YP_008129842.1 | NC_021557_p28 | hypothetical protein | phrog_976 | head maturation protease | head and packaging | 1 | 19069 | 20190 |
| YP_008129830.1 | NC_021557_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10021 | 10290 |
| YP_008129863.1 | NC_021557_p49 | tail fiber domain-containing protein | phrog_6202 | tail fiber protein | tail | 1 | 33352 | 34950 |
| YP_008129838.1 | NC_021557_p24 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 13614 | 15269 |
| YP_008129862.1 | NC_021557_p48 | hypothetical protein | phrog_48 | tail protein | tail | 1 | 32689 | 33348 |
| YP_008129836.1 | NC_021557_p22 | hypothetical protein | phrog_1193 | hemolysin | other | 1 | 12873 | 13121 |
| YP_008129848.1 | NC_021557_p34 | hypothetical protein | phrog_895 | unknown function | unknown function | 1 | 23119 | 23340 |
| YP_008129844.1 | NC_021557_p30 | hypothetical protein | phrog_1005 | major head protein | head and packaging | 1 | 20571 | 21515 |
| YP_008129843.1 | NC_021557_p29 | hypothetical protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 20206 | 20541 |
| YP_008129861.1 | NC_021557_p47 | baseplate assembly protein | phrog_6 | baseplate wedge subunit | tail | 1 | 31596 | 32696 |
| YP_008129858.1 | NC_021557_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30358 | 30789 |