Genomic map of Rhizobium phage RR1-A (NC_021560)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021560
Definition
Rhizobium phage RR1-A genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
53102
Host Name
Rhizobium radiobacter
Host domain
Bacteria
Is prophage?
undef
Number of proteins
68
%GC
57.16
Number of singletons
16
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008130173.1 NC_021560_p26 peptidoglycan-binding domain 1 protein phrog_1259 baseplate hub subunit and tail lysozyme tail 1 20163 20840
YP_008130152.1 NC_021560_p5 hypothetical protein phrog_49 head decoration head and packaging 1 4346 4732
YP_008130148.1 NC_021560_p1 terminase large subunit phrog_15 terminase large subunit head and packaging 1 1 1332
YP_008130204.1 NC_021560_p57 hypothetical protein singleton unknown function unknown function 1 40200 40550
YP_008130207.1 NC_021560_p60 C-5 cytosine-specific DNA methylase phrog_116 DNA methyltransferase other 1 41579 43672
YP_008130202.1 NC_021560_p55 hypothetical protein singleton unknown function unknown function 1 36963 37412
YP_008130169.1 NC_021560_p22 baseplate J family protein phrog_6 baseplate wedge subunit tail 1 16193 17278
YP_008130160.1 NC_021560_p13 hypothetical protein phrog_24302 unknown function unknown function 1 9479 9799
YP_008130176.1 NC_021560_p29 hypothetical protein phrog_2429 involved in bacteriocin production or immunity moron, auxiliary metabolic gene and host takeover 1 21752 21982
YP_008130166.1 NC_021560_p19 tail protein phrog_177 baseplate hub tail 1 14125 15189
YP_008130189.1 NC_021560_p42 hypothetical protein phrog_29931 unknown function unknown function -1 29442 29951
YP_008130186.1 NC_021560_p39 hypothetical protein singleton unknown function unknown function -1 27182 28102
YP_008130193.1 NC_021560_p46 hypothetical protein singleton unknown function unknown function -1 31803 32018
YP_008130214.1 NC_021560_p67 hypothetical protein phrog_57 terminase small subunit head and packaging 1 51202 51981
YP_008130171.1 NC_021560_p24 hypothetical protein singleton unknown function unknown function 1 17985 19193
YP_008130167.1 NC_021560_p20 hypothetical protein phrog_11 baseplate spike tail 1 15198 15674
YP_008130151.1 NC_021560_p4 peptidase S14 phrog_53 head maturation protease head and packaging 1 3283 4332
YP_008130149.1 NC_021560_p2 portal protein phrog_21 portal protein head and packaging 1 1329 2948
YP_008130164.1 NC_021560_p17 hypothetical protein phrog_16855 Gpu-like tail protein tail 1 13044 13502
YP_008130172.1 NC_021560_p25 hypothetical protein singleton unknown function unknown function 1 19197 19745
YP_008130178.1 NC_021560_p31 hypothetical protein phrog_36610 unknown function unknown function 1 22164 22643
YP_008130203.1 NC_021560_p56 DNA methylase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 37594 40203
YP_008130180.1 NC_021560_p33 hypothetical protein singleton unknown function unknown function -1 22965 23501
YP_008130163.1 NC_021560_p16 hypothetical protein phrog_5882 unknown function unknown function -1 12447 12866
YP_008130175.1 NC_021560_p28 hypothetical protein phrog_17576 unknown function unknown function 1 21195 21683
YP_008130199.1 NC_021560_p52 hypothetical protein phrog_7669 unknown function unknown function 1 35497 35751
YP_008130159.1 NC_021560_p12 hypothetical protein phrog_185 tail tube protein tail 1 9098 9469
YP_008130201.1 NC_021560_p54 hypothetical protein phrog_101 CII-like transcriptional activator transcription regulation 1 36466 36966
YP_008130213.1 NC_021560_p66 hypothetical protein phrog_9306 unknown function unknown function 1 50245 51021
YP_008130153.1 NC_021560_p6 hypothetical protein phrog_29 major head protein head and packaging 1 4738 5778
YP_008130179.1 NC_021560_p32 hypothetical protein phrog_12188 unknown function unknown function -1 22665 22964
YP_008130157.1 NC_021560_p10 hypothetical protein phrog_208 unknown function unknown function 1 7402 7566
YP_008130210.1 NC_021560_p63 DNA primase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism 1 46199 48019
YP_008130188.1 NC_021560_p41 DNA polymerase III subunit beta phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 28327 29439
YP_008130168.1 NC_021560_p21 hypothetical protein phrog_180 baseplate wedge subunit tail 1 15685 16221
YP_008130185.1 NC_021560_p38 hypothetical protein singleton unknown function unknown function -1 26765 27136
YP_008130209.1 NC_021560_p62 hypothetical protein phrog_510 DNA primase DNA, RNA and nucleotide metabolism 1 44890 46158
YP_008130170.1 NC_021560_p23 hypothetical protein phrog_203 baseplate wedge subunit tail 1 17253 17972
YP_008130206.1 NC_021560_p59 hypothetical protein phrog_27832 unknown function unknown function 1 41125 41538
YP_008130165.1 NC_021560_p18 hypothetical protein phrog_32470 unknown function unknown function 1 13502 14125
YP_008130192.1 NC_021560_p45 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 31312 31803
YP_008130177.1 NC_021560_p30 hypothetical protein phrog_30642 unknown function unknown function 1 21979 22167
YP_008130174.1 NC_021560_p27 hypothetical protein phrog_25336 unknown function unknown function 1 20864 21190
YP_008130158.1 NC_021560_p11 tail sheath protein phrog_165 tail sheath tail 1 7571 9049
YP_008130161.1 NC_021560_p14 hypothetical protein phrog_27 tail completion or Neck1 protein connector 1 9912 10466
YP_008130211.1 NC_021560_p64 hypothetical protein singleton unknown function unknown function 1 48019 49095
YP_008130215.1 NC_021560_p68 hypothetical protein phrog_15 terminase large subunit head and packaging 1 51978 53102
YP_008130205.1 NC_021560_p58 hypothetical protein singleton unknown function unknown function 1 40547 41125
YP_008130195.1 NC_021560_p48 hypothetical protein singleton unknown function unknown function -1 33011 33301
YP_008130187.1 NC_021560_p40 hypothetical protein singleton unknown function unknown function -1 28089 28334
YP_008130196.1 NC_021560_p49 hypothetical protein phrog_318 deoxyribonucleoside 5' monophosphate phosphatase other -1 33298 34005
YP_008130212.1 NC_021560_p65 antirepressor phrog_2011 anti-repressor Ant transcription regulation 1 49092 49820
YP_008130162.1 NC_021560_p15 hypothetical protein phrog_34270 tail length tape measure protein tail 1 10476 12437
YP_008130155.1 NC_021560_p8 hypothetical protein phrog_29778 unknown function unknown function 1 6270 6671
YP_008130181.1 NC_021560_p34 hypothetical protein singleton unknown function unknown function 1 23673 23972
YP_008130190.1 NC_021560_p43 hypothetical protein phrog_210 unknown function unknown function -1 29966 30883
YP_008130184.1 NC_021560_p37 hypothetical protein phrog_8298 unknown function unknown function -1 26316 26768
YP_008130198.1 NC_021560_p51 hypothetical protein phrog_4 transcriptional repressor transcription regulation -1 34721 35410
YP_008130191.1 NC_021560_p44 hypothetical protein phrog_204 unknown function unknown function -1 30920 31276
YP_008130197.1 NC_021560_p50 hypothetical protein singleton unknown function unknown function -1 34258 34533
YP_008130200.1 NC_021560_p53 hypothetical protein singleton unknown function unknown function -1 36024 36320
YP_008130150.1 NC_021560_p3 hypothetical protein phrog_17985 unknown function unknown function 1 2945 3214
YP_008130183.1 NC_021560_p36 hypothetical protein phrog_3193 unknown function unknown function -1 25801 26292
YP_008130156.1 NC_021560_p9 hypothetical protein phrog_12983 unknown function unknown function 1 6658 7389
YP_008130194.1 NC_021560_p47 hypothetical protein phrog_2045 unknown function unknown function -1 31993 33018
YP_008130208.1 NC_021560_p61 phosphoadenosine phosphosulfate reductase phrog_12882 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 43669 44880
YP_008130154.1 NC_021560_p7 hypothetical protein singleton unknown function unknown function 1 5782 6267
YP_008130182.1 NC_021560_p35 recombinase phrog_95 integrase integration and excision -1 24035 25666