Genomic map of Vibrio phage pYD38-B (NC_021561)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021561
Definition
Vibrio phage pYD38-B genomic sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
37324
Host Name
Vibrio sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
57
%GC
43.07
Number of singletons
14
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008130268.1 NC_021561_p53 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 34658 35122
YP_008130249.1 NC_021561_p34 hypothetical protein phrog_22049 unknown function unknown function 1 22639 22881
YP_008130250.1 NC_021561_p35 hypothetical protein singleton unknown function unknown function 1 22878 23090
YP_008130241.1 NC_021561_p26 hypothetical protein phrog_20046 unknown function unknown function -1 17481 18338
YP_008130265.1 NC_021561_p50 hypothetical protein phrog_5335 unknown function unknown function 1 32872 33483
YP_008130238.1 NC_021561_p23 hypothetical protein phrog_11517 unknown function unknown function -1 14142 14714
YP_008130220.1 NC_021561_p5 hypothetical protein singleton unknown function unknown function 1 4747 5124
YP_008130252.1 NC_021561_p37 hypothetical protein phrog_38 terminase large subunit head and packaging 1 23602 25125
YP_008130219.1 NC_021561_p4 tail tape measure protein phrog_24709 tail length tape measure protein tail 1 1538 4747
YP_008130244.1 NC_021561_p29 hypothetical protein singleton unknown function unknown function -1 20618 20863
YP_008130258.1 NC_021561_p43 hypothetical protein phrog_241 head morphogenesis head and packaging 1 28211 29278
YP_008130226.1 NC_021561_p11 hypothetical protein phrog_1039 immunity to superinfection moron, auxiliary metabolic gene and host takeover -1 9742 9948
YP_008130225.1 NC_021561_p10 hypothetical protein phrog_229 MazG-like pyrophosphatase other -1 9234 9605
YP_008130245.1 NC_021561_p30 hypothetical protein singleton unknown function unknown function -1 20873 21115
YP_008130239.1 NC_021561_p24 exonuclease phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism -1 14727 15569
YP_008130229.1 NC_021561_p14 hypothetical protein phrog_7 endolysin lysis -1 10736 11194
YP_008130223.1 NC_021561_p8 hypothetical protein phrog_2889 unknown function unknown function 1 7046 8413
YP_008130266.1 NC_021561_p51 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 33784 34281
YP_008130247.1 NC_021561_p32 hypothetical protein phrog_33314 unknown function unknown function 1 22079 22228
YP_008130217.1 NC_021561_p2 hypothetical protein phrog_18915 unknown function unknown function 1 540 944
YP_008130231.1 NC_021561_p16 hypothetical protein singleton unknown function unknown function -1 12007 12186
YP_008130224.1 NC_021561_p9 hypothetical protein phrog_31681 unknown function unknown function 1 8760 9134
YP_008130263.1 NC_021561_p48 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 31179 31853
YP_008130243.1 NC_021561_p28 hypothetical protein phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism -1 19223 20599
YP_008130240.1 NC_021561_p25 hypothetical protein phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 15641 17488
YP_008130271.1 NC_021561_p56 hypothetical protein phrog_158 major tail protein tail 1 36386 36859
YP_008130221.1 NC_021561_p6 hypothetical protein phrog_6278 unknown function unknown function 1 5118 6446
YP_008130248.1 NC_021561_p33 hypothetical protein singleton unknown function unknown function 1 22490 22642
YP_008130218.1 NC_021561_p3 hypothetical protein phrog_27352 unknown function unknown function -1 968 1444
YP_008130251.1 NC_021561_p36 hypothetical protein phrog_9747 unknown function unknown function 1 23181 23624
YP_008130228.1 NC_021561_p13 hypothetical protein phrog_4712 holin lysis -1 10520 10672
YP_008130236.1 NC_021561_p21 hypothetical protein phrog_824 unknown function unknown function -1 13158 13571
YP_008130256.1 NC_021561_p41 hypothetical protein phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 25901 26686
YP_008130259.1 NC_021561_p44 hypothetical protein phrog_34529 unknown function unknown function 1 29382 29693
YP_008130269.1 NC_021561_p54 hypothetical protein phrog_25758 unknown function unknown function 1 35122 35505
YP_008130257.1 NC_021561_p42 hypothetical protein phrog_145 portal protein head and packaging 1 26741 28210
YP_008130234.1 NC_021561_p19 hypothetical protein singleton unknown function unknown function -1 12620 12802
YP_008130264.1 NC_021561_p49 major capsid protein phrog_247 major head protein head and packaging 1 31864 32811
YP_008130255.1 NC_021561_p40 hypothetical protein singleton unknown function unknown function 1 25677 25853
YP_008130261.1 NC_021561_p46 hypothetical protein singleton unknown function unknown function 1 29857 30045
YP_008130260.1 NC_021561_p45 hypothetical protein singleton unknown function unknown function 1 29690 29860
YP_008130262.1 NC_021561_p47 hypothetical protein phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 1 30341 31120
YP_008130216.1 NC_021561_p1 hypothetical protein phrog_20684 unknown function unknown function 1 46 528
YP_008130254.1 NC_021561_p39 hypothetical protein phrog_5305 unknown function unknown function 1 25453 25680
YP_008130237.1 NC_021561_p22 hypothetical protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 13619 14095
YP_008130267.1 NC_021561_p52 hypothetical protein phrog_161 head closure Hc1 connector 1 34285 34683
YP_008130235.1 NC_021561_p20 hypothetical protein phrog_852 unknown function unknown function -1 12880 13185
YP_008130272.1 NC_021561_p57 hypothetical protein phrog_20684 unknown function unknown function 1 36928 37305
YP_008130253.1 NC_021561_p38 hypothetical protein phrog_24872 unknown function unknown function 1 25250 25453
YP_008130227.1 NC_021561_p12 hypothetical protein singleton unknown function unknown function -1 10314 10523
YP_008130270.1 NC_021561_p55 DNA methylase phrog_67 DNA methyltransferase other -1 35528 36262
YP_008130232.1 NC_021561_p17 hypothetical protein singleton unknown function unknown function -1 12183 12413
YP_008130246.1 NC_021561_p31 hypothetical protein singleton unknown function unknown function 1 21668 21874
YP_008130230.1 NC_021561_p15 hypothetical protein phrog_30571 unknown function unknown function -1 11462 12010
YP_008130233.1 NC_021561_p18 hypothetical protein phrog_8840 unknown function unknown function -1 12382 12627
YP_008130242.1 NC_021561_p27 hypothetical protein phrog_510 DNA primase DNA, RNA and nucleotide metabolism -1 18411 19220
YP_008130222.1 NC_021561_p7 hypothetical protein singleton unknown function unknown function 1 6446 7042