| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021562 |
Definition |
Vibrio phage VFJ, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Monodnaviria; Loebvirae; Hofneiviricota; Faserviricetes; Tubulavirales; Inoviridae; Saetivirus. |
DB of origin |
REFSEQ |
Length |
8555 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
12 |
%GC |
44.28 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008130282.1 | NC_021562_p10 | phage morphogenesis protein | phrog_1012 | assembly (protein IV of M13) | head and packaging | 1 | 5976 | 7304 |
| YP_008130279.1 | NC_021562_p7 | receptor-binding protein | phrog_1698 | minor head protein; receptor binding | head and packaging | 1 | 3028 | 4527 |
| YP_008130280.1 | NC_021562_p8 | VI protein | phrog_1944 | minor head protein | head and packaging | 1 | 4534 | 4905 |
| YP_008130275.1 | NC_021562_p3 | ssDNA-binding protein | phrog_5738 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 2150 | 2464 |
| YP_008130274.1 | NC_021562_p2 | replication protein | phrog_91 | nicking at origin of replication | DNA, RNA and nucleotide metabolism | 1 | 1 | 2097 |
| YP_008130278.1 | NC_021562_p6 | major coat protein | phrog_1646 | major coat protein | head and packaging | 1 | 2729 | 2950 |
| YP_008130276.1 | NC_021562_p4 | minor coat protein | phrog_7781 | minor coat protein | head and packaging | 1 | 2475 | 2591 |
| YP_008130281.1 | NC_021562_p9 | phage morphogenesis protein | phrog_1675 | morphogenesis (protein I of M13) | head and packaging | 1 | 4991 | 5995 |
| YP_008130283.1 | NC_021562_p11 | transcription regulator | phrog_1668 | tail assembly protein | tail | -1 | 7312 | 7719 |
| YP_008130277.1 | NC_021562_p5 | minor coat protein | phrog_31084 | minor head protein | head and packaging | 1 | 2588 | 2704 |
| YP_008130284.1 | NC_021562_p12 | regulatory protein | phrog_638 | transcriptional regulator | transcription regulation | -1 | 7643 | 8107 |
| YP_008130273.1 | NC_021562_p1 | translation regulation protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 1 | 1 |
| YP_008130273.1 | NC_021562_p1 | translation regulation protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 8215 | 8555 |