Genomic map of Vibrio phage VFJ (NC_021562)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021562
Definition
Vibrio phage VFJ, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Monodnaviria; Loebvirae; Hofneiviricota; Faserviricetes; Tubulavirales; Inoviridae; Saetivirus.
DB of origin
REFSEQ
Length
8555
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
12
%GC
44.28
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008130282.1 NC_021562_p10 phage morphogenesis protein phrog_1012 assembly (protein IV of M13) head and packaging 1 5976 7304
YP_008130279.1 NC_021562_p7 receptor-binding protein phrog_1698 minor head protein; receptor binding head and packaging 1 3028 4527
YP_008130280.1 NC_021562_p8 VI protein phrog_1944 minor head protein head and packaging 1 4534 4905
YP_008130275.1 NC_021562_p3 ssDNA-binding protein phrog_5738 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 2150 2464
YP_008130274.1 NC_021562_p2 replication protein phrog_91 nicking at origin of replication DNA, RNA and nucleotide metabolism 1 1 2097
YP_008130278.1 NC_021562_p6 major coat protein phrog_1646 major coat protein head and packaging 1 2729 2950
YP_008130276.1 NC_021562_p4 minor coat protein phrog_7781 minor coat protein head and packaging 1 2475 2591
YP_008130281.1 NC_021562_p9 phage morphogenesis protein phrog_1675 morphogenesis (protein I of M13) head and packaging 1 4991 5995
YP_008130283.1 NC_021562_p11 transcription regulator phrog_1668 tail assembly protein tail -1 7312 7719
YP_008130277.1 NC_021562_p5 minor coat protein phrog_31084 minor head protein head and packaging 1 2588 2704
YP_008130284.1 NC_021562_p12 regulatory protein phrog_638 transcriptional regulator transcription regulation -1 7643 8107
YP_008130273.1 NC_021562_p1 translation regulation protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 1 1
YP_008130273.1 NC_021562_p1 translation regulation protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 8215 8555