Genomic map of Staphylococcus phage JS01 (NC_021773)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021773
Definition
Staphylococcus phage JS01, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus; unclassified Biseptimavirus.
DB of origin
REFSEQ
Length
43458
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
66
%GC
33.31
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008239550.1 NC_021773_p59 head-tail adaptor phrog_25 head closure Hc1 connector 1 34526 34858
YP_008239516.1 NC_021773_p25 hypothetical protein phrog_823 unknown function unknown function 1 16094 16414
YP_008239544.1 NC_021773_p53 hypothetical protein phrog_1142 unknown function unknown function 1 30594 30833
YP_008239530.1 NC_021773_p39 hypothetical protein phrog_98 unknown function unknown function 1 24016 24465
YP_008239503.1 NC_021773_p12 hypothetical protein phrog_9279 unknown function unknown function 1 9172 9327
YP_008239551.1 NC_021773_p60 HK97family phage protein phrog_5 tail completion or Neck1 protein connector 1 34858 35235
YP_008239499.1 NC_021773_p8 staphylokinase phrog_4358 kinase other 1 6445 6936
YP_008239509.1 NC_021773_p18 repressor-like protein phrog_4 transcriptional repressor transcription regulation -1 13078 13794
YP_008239546.1 NC_021773_p55 prohead protease phrog_80 head maturation protease head and packaging 1 32082 32666
YP_008239491.2 NC_021773_p65 tail length tape-measure protein phrog_167 tail length tape measure protein tail 1 37315 41964
YP_008239508.1 NC_021773_p17 hypothetical protein phrog_6600 unknown function unknown function -1 12209 13066
YP_008239497.1 NC_021773_p6 holin phrog_297 holin lysis 1 5233 5487
YP_008239496.1 NC_021773_p4 hypothetical protein phrog_3700 unknown function unknown function 1 4328 4702
YP_008239511.1 NC_021773_p20 anti-repressor protein phrog_130 anti-repressor Ant transcription regulation 1 14216 15004
YP_008239529.1 NC_021773_p38 hypothetical protein phrog_2532 unknown function unknown function 1 23825 24019
YP_008239500.2 NC_021773_p9 amidase phrog_5404 endolysin lysis 1 7465 7923
YP_008239543.1 NC_021773_p52 terminase large subunit phrog_9 terminase large subunit head and packaging 1 29192 30619
YP_008239539.1 NC_021773_p48 hypothetical protein phrog_1058 unknown function unknown function 1 26937 27398
YP_008239552.1 NC_021773_p61 Phi PVL orf 12-like protein phrog_78 tail terminator connector 1 35232 35612
YP_008239548.1 NC_021773_p57 hypothetical protein phrog_933 unknown function unknown function 1 34037 34195
YP_008239505.1 NC_021773_p14 phi PVL ORF 30-like protein phrog_716 Na/K ATPase other 1 11189 11803
YP_008239493.1 NC_021773_p1 minor structural protein phrog_1786 minor head protein head and packaging 1 12 3794
YP_008239531.1 NC_021773_p40 hypothetical protein phrog_1034 unknown function unknown function 1 24462 24746
YP_008239555.1 NC_021773_p64 hypothetical protein phrog_15504 unknown function unknown function 1 37137 37259
YP_008239506.1 NC_021773_p15 hypothetical protein phrog_787 unknown function unknown function -1 11800 11925
YP_008239545.1 NC_021773_p54 portal protein phrog_12 portal protein head and packaging 1 30839 32089
YP_008239542.1 NC_021773_p51 terminase small subunit phrog_83 terminase small subunit head and packaging 1 28455 28922
YP_008239498.1 NC_021773_p7 autolysin phrog_635 endolysin lysis 1 5499 6254
YP_008239528.1 NC_021773_p37 hypothetical protein phrog_467 unknown function unknown function 1 23442 23828
YP_008239547.1 NC_021773_p56 capsid protein phrog_10 major head protein head and packaging 1 32754 34001
YP_008239495.1 NC_021773_p3 phi PVL ORF 22-like protein phrog_1747 unknown function unknown function 1 3985 4272
YP_008239526.1 NC_021773_p35 PhiPVLfamily protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 22814 23182
YP_008239554.1 NC_021773_p63 hypothetical protein phrog_187 head-tail adaptor connector 1 36631 37077
YP_008239549.1 NC_021773_p58 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 34204 34536
YP_008239518.1 NC_021773_p27 hypothetical protein phrog_2527 unknown function unknown function 1 16934 17197
YP_008239535.1 NC_021773_p44 integrase regulator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 25756 25905
YP_008239507.1 NC_021773_p16 hypothetical protein phrog_1176 unknown function unknown function -1 11982 12164
YP_008239533.1 NC_021773_p42 hypothetical protein phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 24980 25516
YP_008239520.1 NC_021773_p29 phage-related DNA recombination protein phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 19151 20071
YP_008239553.1 NC_021773_p62 major tail protein, Phi13 family phrog_88 major tail protein tail 1 35613 36566
YP_008239540.1 NC_021773_p49 hypothetical protein phrog_229 MazG-like pyrophosphatase other 1 27513 27965
YP_008239537.1 NC_021773_p46 hypothetical protein phrog_5652 unknown function unknown function 1 26064 26714
YP_008239525.1 NC_021773_p34 crossover junction endodeoxyribonuclease RusA phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 22397 22801
YP_008239524.1 NC_021773_p33 hypothetical protein phrog_433 unknown function unknown function 1 22170 22388
YP_008492945.1 NC_021773_p5 membrane protein phrog_3488 holin lysis 1 4887 5021
YP_008239519.1 NC_021773_p28 hypothetical protein phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 17200 19149
YP_008239536.1 NC_021773_p45 hypothetical protein phrog_5788 unknown function unknown function 1 25905 26057
YP_008239512.1 NC_021773_p21 hypothetical protein phrog_845 unknown function unknown function 1 15020 15214
YP_008239504.1 NC_021773_p13 integrase phrog_1 integrase integration and excision -1 10044 11081
YP_008239514.1 NC_021773_p23 hypothetical protein phrog_7496 unknown function unknown function 1 15615 15806
YP_008239534.1 NC_021773_p43 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 25553 25759
YP_008239527.1 NC_021773_p36 hypothetical protein phrog_258 virulence associated other 1 23186 23428
YP_008239502.1 NC_021773_p11 hypothetical protein phrog_20340 unknown function unknown function -1 8836 9027
YP_008239513.1 NC_021773_p22 hypothetical protein phrog_585 unknown function unknown function -1 15209 15565
YP_008239494.1 NC_021773_p2 hypothetical protein phrog_1399 unknown function unknown function 1 3787 3939
YP_008239538.1 NC_021773_p47 hypothetical protein phrog_386 unknown function unknown function 1 26711 26914
YP_008239522.1 NC_021773_p31 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 20770 21240
YP_008239523.1 NC_021773_p32 regulatory protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 21270 22163
YP_008239492.1 NC_021773_p66 hypothetical protein phrog_202 distal tail protein Dit tail 1 41964 43454
YP_008239510.1 NC_021773_p19 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 13958 14200
YP_008239521.1 NC_021773_p30 hypothetical protein phrog_392 metal-dependent hydrolase other 1 20284 20769
YP_008239532.1 NC_021773_p41 hypothetical protein phrog_266 unknown function unknown function 1 24739 24987
YP_008239515.1 NC_021773_p24 hypothetical protein phrog_6634 unknown function unknown function -1 15808 16035
YP_008239517.1 NC_021773_p26 phi PVL orf 39-like protein phrog_401 unknown function unknown function 1 16665 16925
YP_008239501.1 NC_021773_p10 complement inhibitor phrog_4954 complement inhibitor other 1 8433 8783
YP_008239541.1 NC_021773_p50 endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 27972 28325