| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021777 |
Definition |
Salmonella phage Jersey, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus. |
DB of origin |
REFSEQ |
Length |
43447 |
Host Name |
Salmonella |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
69 |
%GC |
49.97 |
Number of singletons |
8 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008239749.1 | NC_021777_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29525 | 29647 |
| YP_008239761.1 | NC_021777_p52 | hypothetical protein | phrog_5169 | unknown function | unknown function | -1 | 38384 | 38617 |
| YP_008239724.1 | NC_021777_p15 | hypothetical protein | phrog_4451 | unknown function | unknown function | 1 | 10672 | 10860 |
| YP_008239758.1 | NC_021777_p49 | hypothetical protein | phrog_3127 | unknown function | unknown function | -1 | 35245 | 35775 |
| YP_008239733.1 | NC_021777_p24 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 15391 | 16521 |
| YP_008239736.1 | NC_021777_p27 | hypothetical protein | phrog_4557 | unknown function | unknown function | 1 | 17512 | 17868 |
| YP_008239765.1 | NC_021777_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39666 | 39836 |
| YP_008239776.1 | NC_021777_p67 | hypothetical protein | phrog_4684 | unknown function | unknown function | 1 | 42730 | 42888 |
| YP_008239772.1 | NC_021777_p63 | hypothetical protein | phrog_2508 | holin | lysis | 1 | 41465 | 41755 |
| YP_008239710.1 | NC_021777_p1 | terminase small subunit | phrog_3064 | terminase | head and packaging | 1 | 40 | 585 |
| YP_008239716.1 | NC_021777_p7 | hypothetical protein | phrog_3945 | Hoc-like head decoration | head and packaging | 1 | 6725 | 7183 |
| YP_008239774.1 | NC_021777_p65 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 42405 | 42581 |
| YP_008239743.1 | NC_021777_p34 | hypothetical protein | phrog_5915 | unknown function | unknown function | -1 | 26281 | 26436 |
| YP_008239753.1 | NC_021777_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32950 | 33108 |
| YP_008239742.1 | NC_021777_p33 | tailspike protein | phrog_1819 | tail spike protein | tail | 1 | 24108 | 26162 |
| YP_008239717.1 | NC_021777_p8 | hypothetical protein | phrog_14923 | unknown function | unknown function | 1 | 7265 | 7456 |
| YP_008239723.1 | NC_021777_p14 | hypothetical protein | phrog_4069 | Hoc-like head decoration | head and packaging | 1 | 10285 | 10635 |
| YP_008239721.1 | NC_021777_p12 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 8786 | 9841 |
| YP_008239715.1 | NC_021777_p6 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 5679 | 6722 |
| YP_008239739.1 | NC_021777_p30 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 20669 | 21184 |
| YP_008239762.1 | NC_021777_p53 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 38614 | 38784 |
| YP_008239732.1 | NC_021777_p23 | hypothetical protein | phrog_2452 | unknown function | unknown function | -1 | 15164 | 15394 |
| YP_008239769.1 | NC_021777_p60 | hypothetical protein | phrog_4947 | unknown function | unknown function | 1 | 40681 | 40977 |
| YP_008239719.1 | NC_021777_p10 | spannin | phrog_1267 | Rz-like spanin | lysis | 1 | 7733 | 7996 |
| YP_008239768.1 | NC_021777_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40475 | 40684 |
| YP_008239744.1 | NC_021777_p35 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26433 | 26918 |
| YP_008239711.1 | NC_021777_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 582 | 1832 |
| YP_008239718.1 | NC_021777_p9 | hypothetical protein | phrog_2536 | Rz-like spanin | lysis | 1 | 7501 | 7887 |
| YP_008239720.1 | NC_021777_p11 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 8081 | 8782 |
| YP_008239747.1 | NC_021777_p38 | hypothetical protein | phrog_4879 | unknown function | unknown function | -1 | 29012 | 29203 |
| YP_008239760.1 | NC_021777_p51 | hypothetical protein | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | -1 | 36141 | 38327 |
| YP_008239731.1 | NC_021777_p22 | DNA-binding protein | phrog_63 | anti-repressor Ant | transcription regulation | -1 | 14352 | 14963 |
| YP_008239727.1 | NC_021777_p18 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 11981 | 12340 |
| YP_008239734.1 | NC_021777_p25 | hypothetical protein | phrog_14165 | unknown function | unknown function | -1 | 16584 | 16913 |
| YP_008239712.1 | NC_021777_p3 | Hef-like homing endonuclease | phrog_559 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 1845 | 3224 |
| YP_008239728.1 | NC_021777_p19 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 12337 | 12732 |
| YP_008239752.1 | NC_021777_p43 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 32243 | 32869 |
| YP_008239726.1 | NC_021777_p17 | hypothetical protein | phrog_3614 | unknown function | unknown function | 1 | 11376 | 11981 |
| YP_008239763.1 | NC_021777_p54 | hypothetical protein | phrog_12538 | unknown function | unknown function | 1 | 39240 | 39431 |
| YP_008239725.1 | NC_021777_p16 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 10864 | 11373 |
| YP_008239756.1 | NC_021777_p47 | hypothetical protein | phrog_4965 | unknown function | unknown function | -1 | 34543 | 34815 |
| YP_008239755.1 | NC_021777_p46 | HNH endonuclease | singleton | unknown function | unknown function | -1 | 34343 | 34546 |
| YP_008239764.1 | NC_021777_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39443 | 39628 |
| YP_008239778.1 | NC_021777_p69 | NinH protein | phrog_268 | unknown function | unknown function | 1 | 43133 | 43348 |
| YP_008239759.1 | NC_021777_p50 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 35909 | 36127 |
| YP_008239775.1 | NC_021777_p66 | hypothetical protein | phrog_3002 | unknown function | unknown function | 1 | 42578 | 42733 |
| YP_008239745.1 | NC_021777_p36 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 26915 | 28339 |
| YP_008239714.1 | NC_021777_p5 | hypothetical protein | phrog_6095 | amidase | lysis | -1 | 4882 | 5535 |
| YP_008239750.1 | NC_021777_p41 | hypothetical protein | phrog_10404 | unknown function | unknown function | -1 | 29730 | 29861 |
| YP_008239757.1 | NC_021777_p48 | NinX protein | phrog_444 | unknown function | unknown function | -1 | 34815 | 35201 |
| YP_008239738.1 | NC_021777_p29 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 20172 | 20672 |
| YP_008239777.1 | NC_021777_p68 | hypothetical protein | phrog_1402 | unknown function | unknown function | 1 | 42885 | 43094 |
| YP_008239741.1 | NC_021777_p32 | tail fiber protein | phrog_469 | tail protein | tail | 1 | 21537 | 24095 |
| YP_008239754.1 | NC_021777_p45 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 33105 | 34346 |
| YP_008239771.1 | NC_021777_p62 | holin | phrog_2359 | holin | lysis | 1 | 41182 | 41463 |
| YP_008239770.1 | NC_021777_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41013 | 41102 |
| YP_008239737.1 | NC_021777_p28 | tail tape measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 17861 | 20170 |
| YP_008239773.1 | NC_021777_p64 | lysin | phrog_7 | endolysin | lysis | 1 | 41733 | 42221 |
| YP_008239746.1 | NC_021777_p37 | C-5 cytosine-specific DNA methylase | phrog_757 | DNA methyltransferase | other | -1 | 28332 | 29015 |
| YP_008239729.1 | NC_021777_p20 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 12732 | 13151 |
| YP_008239735.1 | NC_021777_p26 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 17090 | 17506 |
| YP_008239766.1 | NC_021777_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39952 | 40272 |
| YP_008239730.1 | NC_021777_p21 | hypothetical protein | phrog_290 | minor tail protein | tail | 1 | 13151 | 14320 |
| YP_008239713.1 | NC_021777_p4 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 3379 | 4851 |
| YP_008239740.1 | NC_021777_p31 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 21181 | 21546 |
| YP_008239767.1 | NC_021777_p58 | hypothetical protein | phrog_3766 | unknown function | unknown function | 1 | 40269 | 40472 |
| YP_008239751.1 | NC_021777_p42 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29851 | 32031 |
| YP_008239722.1 | NC_021777_p13 | hypothetical protein | phrog_1954 | virion structural protein | head and packaging | 1 | 9902 | 10273 |
| YP_008239748.1 | NC_021777_p39 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 29235 | 29522 |