Genomic map of Salmonella phage Jersey (NC_021777)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021777
Definition
Salmonella phage Jersey, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus.
DB of origin
REFSEQ
Length
43447
Host Name
Salmonella
Host domain
Bacteria
Is prophage?
undef
Number of proteins
69
%GC
49.97
Number of singletons
8
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008239749.1 NC_021777_p40 hypothetical protein singleton unknown function unknown function -1 29525 29647
YP_008239761.1 NC_021777_p52 hypothetical protein phrog_5169 unknown function unknown function -1 38384 38617
YP_008239724.1 NC_021777_p15 hypothetical protein phrog_4451 unknown function unknown function 1 10672 10860
YP_008239758.1 NC_021777_p49 hypothetical protein phrog_3127 unknown function unknown function -1 35245 35775
YP_008239733.1 NC_021777_p24 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 15391 16521
YP_008239736.1 NC_021777_p27 hypothetical protein phrog_4557 unknown function unknown function 1 17512 17868
YP_008239765.1 NC_021777_p56 hypothetical protein singleton unknown function unknown function -1 39666 39836
YP_008239776.1 NC_021777_p67 hypothetical protein phrog_4684 unknown function unknown function 1 42730 42888
YP_008239772.1 NC_021777_p63 hypothetical protein phrog_2508 holin lysis 1 41465 41755
YP_008239710.1 NC_021777_p1 terminase small subunit phrog_3064 terminase head and packaging 1 40 585
YP_008239716.1 NC_021777_p7 hypothetical protein phrog_3945 Hoc-like head decoration head and packaging 1 6725 7183
YP_008239774.1 NC_021777_p65 hypothetical protein phrog_2180 unknown function unknown function 1 42405 42581
YP_008239743.1 NC_021777_p34 hypothetical protein phrog_5915 unknown function unknown function -1 26281 26436
YP_008239753.1 NC_021777_p44 hypothetical protein singleton unknown function unknown function -1 32950 33108
YP_008239742.1 NC_021777_p33 tailspike protein phrog_1819 tail spike protein tail 1 24108 26162
YP_008239717.1 NC_021777_p8 hypothetical protein phrog_14923 unknown function unknown function 1 7265 7456
YP_008239723.1 NC_021777_p14 hypothetical protein phrog_4069 Hoc-like head decoration head and packaging 1 10285 10635
YP_008239721.1 NC_021777_p12 major capsid protein phrog_247 major head protein head and packaging 1 8786 9841
YP_008239715.1 NC_021777_p6 head morphogenesis protein phrog_241 head morphogenesis head and packaging 1 5679 6722
YP_008239739.1 NC_021777_p30 hypothetical protein phrog_396 minor tail protein tail 1 20669 21184
YP_008239762.1 NC_021777_p53 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 38614 38784
YP_008239732.1 NC_021777_p23 hypothetical protein phrog_2452 unknown function unknown function -1 15164 15394
YP_008239769.1 NC_021777_p60 hypothetical protein phrog_4947 unknown function unknown function 1 40681 40977
YP_008239719.1 NC_021777_p10 spannin phrog_1267 Rz-like spanin lysis 1 7733 7996
YP_008239768.1 NC_021777_p59 hypothetical protein singleton unknown function unknown function 1 40475 40684
YP_008239744.1 NC_021777_p35 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 26433 26918
YP_008239711.1 NC_021777_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 582 1832
YP_008239718.1 NC_021777_p9 hypothetical protein phrog_2536 Rz-like spanin lysis 1 7501 7887
YP_008239720.1 NC_021777_p11 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 8081 8782
YP_008239747.1 NC_021777_p38 hypothetical protein phrog_4879 unknown function unknown function -1 29012 29203
YP_008239760.1 NC_021777_p51 hypothetical protein phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism -1 36141 38327
YP_008239731.1 NC_021777_p22 DNA-binding protein phrog_63 anti-repressor Ant transcription regulation -1 14352 14963
YP_008239727.1 NC_021777_p18 hypothetical protein phrog_161 head closure Hc1 connector 1 11981 12340
YP_008239734.1 NC_021777_p25 hypothetical protein phrog_14165 unknown function unknown function -1 16584 16913
YP_008239712.1 NC_021777_p3 Hef-like homing endonuclease phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism -1 1845 3224
YP_008239728.1 NC_021777_p19 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 12337 12732
YP_008239752.1 NC_021777_p43 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 32243 32869
YP_008239726.1 NC_021777_p17 hypothetical protein phrog_3614 unknown function unknown function 1 11376 11981
YP_008239763.1 NC_021777_p54 hypothetical protein phrog_12538 unknown function unknown function 1 39240 39431
YP_008239725.1 NC_021777_p16 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 10864 11373
YP_008239756.1 NC_021777_p47 hypothetical protein phrog_4965 unknown function unknown function -1 34543 34815
YP_008239755.1 NC_021777_p46 HNH endonuclease singleton unknown function unknown function -1 34343 34546
YP_008239764.1 NC_021777_p55 hypothetical protein singleton unknown function unknown function 1 39443 39628
YP_008239778.1 NC_021777_p69 NinH protein phrog_268 unknown function unknown function 1 43133 43348
YP_008239759.1 NC_021777_p50 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 35909 36127
YP_008239775.1 NC_021777_p66 hypothetical protein phrog_3002 unknown function unknown function 1 42578 42733
YP_008239745.1 NC_021777_p36 DNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 26915 28339
YP_008239714.1 NC_021777_p5 hypothetical protein phrog_6095 amidase lysis -1 4882 5535
YP_008239750.1 NC_021777_p41 hypothetical protein phrog_10404 unknown function unknown function -1 29730 29861
YP_008239757.1 NC_021777_p48 NinX protein phrog_444 unknown function unknown function -1 34815 35201
YP_008239738.1 NC_021777_p29 hypothetical protein phrog_384 virion structural protein head and packaging 1 20172 20672
YP_008239777.1 NC_021777_p68 hypothetical protein phrog_1402 unknown function unknown function 1 42885 43094
YP_008239741.1 NC_021777_p32 tail fiber protein phrog_469 tail protein tail 1 21537 24095
YP_008239754.1 NC_021777_p45 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 33105 34346
YP_008239771.1 NC_021777_p62 holin phrog_2359 holin lysis 1 41182 41463
YP_008239770.1 NC_021777_p61 hypothetical protein singleton unknown function unknown function 1 41013 41102
YP_008239737.1 NC_021777_p28 tail tape measure protein phrog_1538 tail length tape measure protein tail 1 17861 20170
YP_008239773.1 NC_021777_p64 lysin phrog_7 endolysin lysis 1 41733 42221
YP_008239746.1 NC_021777_p37 C-5 cytosine-specific DNA methylase phrog_757 DNA methyltransferase other -1 28332 29015
YP_008239729.1 NC_021777_p20 hypothetical protein phrog_179 tail terminator connector 1 12732 13151
YP_008239735.1 NC_021777_p26 hypothetical protein phrog_313 Tail assembly chaperone tail 1 17090 17506
YP_008239766.1 NC_021777_p57 hypothetical protein singleton unknown function unknown function 1 39952 40272
YP_008239730.1 NC_021777_p21 hypothetical protein phrog_290 minor tail protein tail 1 13151 14320
YP_008239713.1 NC_021777_p4 portal protein phrog_145 portal protein head and packaging 1 3379 4851
YP_008239740.1 NC_021777_p31 hypothetical protein phrog_329 minor tail protein tail 1 21181 21546
YP_008239767.1 NC_021777_p58 hypothetical protein phrog_3766 unknown function unknown function 1 40269 40472
YP_008239751.1 NC_021777_p42 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29851 32031
YP_008239722.1 NC_021777_p13 hypothetical protein phrog_1954 virion structural protein head and packaging 1 9902 10273
YP_008239748.1 NC_021777_p39 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 29235 29522