functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
NC_021779 |
Definition |
Salmonella phage FSL SP-030, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chivirus. |
DB of origin |
REFSEQ |
Length |
59746 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
71 |
%GC |
56.55 |
Number of singletons |
0 |
Number of paralogs |
2 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
YP_008239833.1 | NC_021779_p3 | hypothetical protein | phrog_7401 | unknown function | unknown function | -1 | 3522 | 3803 |
YP_008239863.1 | NC_021779_p33 | hypothetical protein | phrog_2448 | unknown function | unknown function | 1 | 34843 | 35805 |
YP_008239885.1 | NC_021779_p55 | hypothetical protein | phrog_6886 | unknown function | unknown function | -1 | 49720 | 50466 |
YP_008239856.1 | NC_021779_p26 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 26195 | 27883 |
YP_008239853.1 | NC_021779_p23 | pre-tape measure frameshift protein G-T | phrog_5260 | tail protein | tail | 1 | 21198 | 21659 |
YP_008239855.1 | NC_021779_p25 | tape measure protein | phrog_2335 | tail length tape measure protein | tail | 1 | 21963 | 26189 |
YP_008239835.1 | NC_021779_p5 | hypothetical protein | phrog_8318 | unknown function | unknown function | 1 | 4504 | 4833 |
YP_008239850.1 | NC_021779_p20 | hypothetical protein | phrog_27 | tail completion or Neck1 protein | connector | 1 | 18816 | 19442 |
YP_008239879.1 | NC_021779_p49 | hypothetical protein | phrog_8705 | unknown function | unknown function | -1 | 45884 | 46105 |
YP_008239842.1 | NC_021779_p12 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | 1 | 11277 | 13352 |
YP_008239832.1 | NC_021779_p2 | DR0530-like primase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 940 | 3525 |
YP_008239898.1 | NC_021779_p68 | hypothetical protein | phrog_3786 | unknown function | unknown function | 1 | 58298 | 58570 |
YP_008239870.1 | NC_021779_p40 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | -1 | 41720 | 42181 |
YP_008239896.1 | NC_021779_p66 | hypothetical protein | phrog_8635 | unknown function | unknown function | 1 | 56770 | 56991 |
YP_008239861.1 | NC_021779_p31 | tail fiber protein | phrog_7049 | tail fiber protein | tail | 1 | 33075 | 33815 |
YP_008239854.1 | NC_021779_p24 | pre-tape measure frameshift protein G-T | phrog_9221 | tail length tape measure protein | tail | 1 | 21704 | 21901 |
YP_008239868.1 | NC_021779_p38 | virion protein | phrog_873 | endolysin | head and packaging | 1 | 40625 | 41338 |
YP_008239860.1 | NC_021779_p30 | hypothetical protein | phrog_6284 | tail protein | tail | 1 | 29182 | 33075 |
YP_008239857.1 | NC_021779_p27 | structural phage protein | phrog_778 | tail assembly protein | tail | 1 | 27893 | 28711 |
YP_008239892.1 | NC_021779_p62 | hypothetical protein | phrog_6647 | unknown function | unknown function | -1 | 53391 | 53762 |
YP_008239849.1 | NC_021779_p19 | hypothetical protein | phrog_4858 | unknown function | unknown function | 1 | 18451 | 18816 |
YP_008239844.1 | NC_021779_p14 | portal protein | phrog_21 | portal protein | head and packaging | 1 | 13614 | 15293 |
YP_008239883.1 | NC_021779_p53 | hypothetical protein | phrog_8386 | unknown function | unknown function | -1 | 48045 | 49142 |
YP_008239890.1 | NC_021779_p60 | hypothetical protein | phrog_7734 | unknown function | unknown function | -1 | 52557 | 52892 |
YP_008239891.1 | NC_021779_p61 | hypothetical protein | phrog_7942 | unknown function | unknown function | -1 | 52879 | 53319 |
YP_008239886.1 | NC_021779_p56 | hypothetical protein | phrog_7587 | unknown function | unknown function | -1 | 50656 | 50931 |
YP_008239880.1 | NC_021779_p50 | hypothetical protein | phrog_9067 | unknown function | unknown function | -1 | 46102 | 46296 |
YP_008239841.1 | NC_021779_p11 | TerS | phrog_141 | terminase small subunit | head and packaging | 1 | 10718 | 11287 |
YP_008239839.1 | NC_021779_p9 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 8922 | 9209 |
YP_008239864.1 | NC_021779_p34 | hypothetical protein | phrog_2448 | unknown function | unknown function | 1 | 35819 | 36838 |
YP_008239834.1 | NC_021779_p4 | hypothetical protein | phrog_7721 | unknown function | unknown function | 1 | 4043 | 4441 |
YP_008239881.1 | NC_021779_p51 | hypothetical protein | phrog_8209 | unknown function | unknown function | -1 | 46307 | 47281 |
YP_008239888.1 | NC_021779_p58 | hypothetical protein | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | -1 | 51172 | 52248 |
YP_008239858.1 | NC_021779_p28 | tail assembly protein | phrog_1180 | tail assembly chaperone | tail | 1 | 28723 | 28953 |
YP_008239874.1 | NC_021779_p44 | hypothetical protein | phrog_8264 | unknown function | unknown function | -1 | 44042 | 44494 |
YP_008239848.1 | NC_021779_p18 | hypothetical protein | phrog_7559 | unknown function | unknown function | 1 | 18155 | 18448 |
YP_008239884.1 | NC_021779_p54 | hypothetical protein | phrog_8641 | unknown function | unknown function | -1 | 49139 | 49693 |
YP_008239838.1 | NC_021779_p8 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 6923 | 8920 |
YP_008239887.1 | NC_021779_p57 | hypothetical protein | phrog_7200 | unknown function | unknown function | -1 | 50936 | 51169 |
YP_008239895.1 | NC_021779_p65 | hypothetical protein | phrog_9514 | unknown function | unknown function | 1 | 56225 | 56773 |
YP_008239901.1 | NC_021779_p71 | hypothetical protein | phrog_8116 | unknown function | unknown function | 1 | 59016 | 59267 |
YP_008239867.1 | NC_021779_p37 | hypothetical protein | phrog_7686 | Rz-like spanin | lysis | 1 | 40283 | 40621 |
YP_008239876.1 | NC_021779_p46 | hypothetical protein | phrog_3012 | unknown function | unknown function | -1 | 44784 | 45065 |
YP_008239859.1 | NC_021779_p29 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 28953 | 29192 |
YP_008239843.1 | NC_021779_p13 | head-tail joining protein lambda W | phrog_75 | head-tail adaptor Ad1 | connector | 1 | 13363 | 13617 |
YP_008239872.1 | NC_021779_p42 | hypothetical protein | phrog_8098 | unknown function | unknown function | -1 | 43067 | 43780 |
YP_008239894.1 | NC_021779_p64 | hypothetical protein | phrog_10759 | unknown function | unknown function | 1 | 55729 | 56211 |
YP_008239865.1 | NC_021779_p35 | hypothetical protein | phrog_27578 | unknown function | unknown function | 1 | 37252 | 38079 |
YP_008239871.1 | NC_021779_p41 | NinC protein | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | -1 | 42178 | 43077 |
YP_008239899.1 | NC_021779_p69 | hypothetical protein | phrog_8059 | unknown function | unknown function | 1 | 58573 | 58779 |
YP_008239900.1 | NC_021779_p70 | hypothetical protein | phrog_7646 | unknown function | unknown function | 1 | 58772 | 59023 |
YP_008239882.1 | NC_021779_p52 | DNA adenine methylase | phrog_111 | DNA methyltransferase | other | -1 | 47359 | 48045 |
YP_008239889.1 | NC_021779_p59 | hypothetical protein | phrog_7965 | unknown function | unknown function | -1 | 52229 | 52570 |
YP_008239846.1 | NC_021779_p16 | decorator protein D | phrog_49 | head decoration | head and packaging | 1 | 16636 | 17016 |
YP_008239873.1 | NC_021779_p43 | hypothetical protein | phrog_1714 | unknown function | unknown function | -1 | 43777 | 44040 |
YP_008239851.1 | NC_021779_p21 | hypothetical protein | phrog_5078 | tail terminator | connector | 1 | 19439 | 19942 |
YP_008239836.1 | NC_021779_p6 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 4826 | 6163 |
YP_008239862.1 | NC_021779_p32 | hypothetical protein | phrog_2448 | unknown function | unknown function | 1 | 33885 | 34832 |
YP_008239847.1 | NC_021779_p17 | capsid protein E | phrog_29 | major head protein | head and packaging | 1 | 17029 | 18093 |
YP_008239875.1 | NC_021779_p45 | hypothetical protein | phrog_9301 | unknown function | unknown function | -1 | 44491 | 44787 |
YP_008239840.1 | NC_021779_p10 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 9256 | 10731 |
YP_008239866.1 | NC_021779_p36 | hypothetical protein | phrog_7226 | unknown function | unknown function | 1 | 38089 | 40218 |
YP_008239878.1 | NC_021779_p48 | hypothetical protein | phrog_9722 | unknown function | unknown function | -1 | 45640 | 45894 |
YP_008239845.1 | NC_021779_p15 | prohead protease ClpP | phrog_53 | head maturation protease | head and packaging | 1 | 15335 | 16606 |
YP_008239831.1 | NC_021779_p1 | cro/c1 | phrog_2339 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 599 | 886 |
YP_008239869.1 | NC_021779_p39 | hypothetical protein | phrog_1275 | Rz-like spanin | lysis | 1 | 41537 | 41719 |
YP_008239893.1 | NC_021779_p63 | hypothetical protein | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 53953 | 54477 |
YP_008239852.1 | NC_021779_p22 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 19956 | 21101 |
YP_008239877.1 | NC_021779_p47 | hypothetical protein | phrog_9072 | thymidylate synthase complementing protein | DNA, RNA and nucleotide metabolism | -1 | 45146 | 45658 |
YP_008239897.1 | NC_021779_p67 | hypothetical protein | phrog_10087 | unknown function | unknown function | 1 | 57117 | 58286 |
YP_008239837.1 | NC_021779_p7 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 6218 | 6814 |