Genomic map of Salmonella virus FSLSP088 (NC_021780)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021780
Definition
Salmonella phage FSL SP-088, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chivirus.
DB of origin
REFSEQ
Length
59454
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
70
%GC
56.44
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008239949.1 NC_021780_p48 pre-tape measure frameshift protein G-T phrog_5260 tail protein tail -1 37807 38268
YP_008239957.1 NC_021780_p56 prohead protease ClpP phrog_53 head maturation protease head and packaging -1 42878 44149
YP_008239940.1 NC_021780_p39 hypothetical protein phrog_2448 unknown function unknown function -1 24637 25644
YP_008239909.1 NC_021780_p8 hypothetical protein phrog_10759 unknown function unknown function -1 3572 4054
YP_008239959.1 NC_021780_p58 head-tail joining protein lambda W phrog_75 head-tail adaptor Ad1 connector -1 45867 46121
YP_008239961.1 NC_021780_p60 TerS phrog_141 terminase small subunit head and packaging -1 48197 48766
YP_008239911.1 NC_021780_p10 hypothetical protein phrog_4445 unknown function unknown function -1 4825 5085
YP_008239955.1 NC_021780_p54 capsid protein E phrog_29 major head protein head and packaging -1 41367 42431
YP_008239918.1 NC_021780_p17 hypothetical protein phrog_7587 unknown function unknown function 1 8673 8948
YP_008239958.1 NC_021780_p57 portal protein phrog_21 portal protein head and packaging -1 44191 45870
YP_008239906.1 NC_021780_p5 hypothetical protein phrog_10087 unknown function unknown function -1 1496 2665
YP_008239933.1 NC_021780_p32 nucleoside 2-deoxyribosyltransferase phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 17286 17747
YP_008239916.1 NC_021780_p15 exonuclease RdgC phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism 1 7359 8432
YP_008239931.1 NC_021780_p30 hypothetical protein phrog_25081 unknown function unknown function 1 16128 16355
YP_008239939.1 NC_021780_p38 hypothetical protein phrog_2448 unknown function unknown function -1 23664 24626
YP_008239915.1 NC_021780_p14 hypothetical protein phrog_7965 unknown function unknown function 1 7037 7378
YP_008239913.1 NC_021780_p12 hypothetical protein phrog_7942 unknown function unknown function 1 6288 6728
YP_008239908.1 NC_021780_p7 hypothetical protein phrog_9514 unknown function unknown function -1 3009 3557
YP_008239927.1 NC_021780_p26 hypothetical protein phrog_3012 unknown function unknown function 1 14219 14500
YP_008239929.1 NC_021780_p28 hypothetical protein phrog_8264 unknown function unknown function 1 14805 15257
YP_008239965.1 NC_021780_p64 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 52670 53266
YP_008239948.1 NC_021780_p47 pre-tape measure frameshift protein G-T phrog_9221 tail length tape measure protein tail -1 37565 37762
YP_008239932.1 NC_021780_p31 NinC protein phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 16375 17289
YP_008239905.1 NC_021780_p4 hypothetical protein phrog_3786 unknown function unknown function -1 1213 1485
YP_008239956.1 NC_021780_p55 decorator protein D phrog_49 head decoration head and packaging -1 42444 42848
YP_008239942.1 NC_021780_p41 phage tail protein phrog_6284 tail protein tail -1 26394 30284
YP_008239910.1 NC_021780_p9 hypothetical protein phrog_3199 unknown function unknown function -1 4272 4811
YP_008239921.1 NC_021780_p20 hypothetical protein phrog_8386 unknown function unknown function 1 10534 11634
YP_008239963.1 NC_021780_p62 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 50275 50562
YP_008239947.1 NC_021780_p46 tape measure protein phrog_2335 tail length tape measure protein tail -1 33277 37572
YP_008239924.1 NC_021780_p23 hypothetical protein phrog_9067 unknown function unknown function 1 13224 13418
YP_008239903.1 NC_021780_p2 hypothetical protein phrog_7646 unknown function unknown function -1 760 1011
YP_008239943.1 NC_021780_p42 hypothetical protein phrog_1196 tail assembly chaperone tail -1 30274 30513
YP_008239937.1 NC_021780_p36 hypothetical protein phrog_7226 unknown function unknown function -1 19248 21377
YP_008239926.1 NC_021780_p25 hypothetical protein phrog_9072 thymidylate synthase complementing protein DNA, RNA and nucleotide metabolism 1 13626 14138
YP_008239922.1 NC_021780_p21 DNA adenine methylase phrog_111 DNA methyltransferase other 1 11634 12320
YP_008239907.1 NC_021780_p6 hypothetical protein phrog_8635 unknown function unknown function -1 2791 3012
YP_008239912.1 NC_021780_p11 hypothetical protein phrog_6647 unknown function unknown function 1 5845 6216
YP_008239968.1 NC_021780_p67 hypothetical protein phrog_7721 unknown function unknown function -1 55043 55453
YP_008239962.1 NC_021780_p61 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 48753 50228
YP_008239953.1 NC_021780_p52 hypothetical protein phrog_4858 unknown function unknown function -1 40644 41009
YP_008239930.1 NC_021780_p29 hypothetical protein phrog_8098 unknown function unknown function 1 15259 15963
YP_008239917.1 NC_021780_p16 hypothetical protein phrog_7200 unknown function unknown function 1 8435 8668
YP_008239925.1 NC_021780_p24 hypothetical protein phrog_8705 unknown function unknown function 1 13415 13636
YP_008239945.1 NC_021780_p44 structural phage protein phrog_778 tail assembly protein tail -1 30755 31573
YP_008239919.1 NC_021780_p18 hypothetical protein phrog_6886 unknown function unknown function 1 9138 9884
YP_008239960.1 NC_021780_p59 terminase large subunit phrog_15 terminase large subunit head and packaging -1 46132 48213
YP_008239952.1 NC_021780_p51 hypothetical protein phrog_27 tail completion or Neck1 protein connector -1 40018 40644
YP_008239904.1 NC_021780_p3 hypothetical protein phrog_8059 unknown function unknown function -1 1004 1210
YP_008239966.1 NC_021780_p65 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 53321 54658
YP_008239971.1 NC_021780_p70 helix-turn-helix XRE-family of transcriptional regulators phrog_18318 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 58600 58926
YP_008239951.1 NC_021780_p50 hypothetical protein phrog_5078 tail terminator connector -1 39518 40021
YP_008239902.1 NC_021780_p1 hypothetical protein phrog_8116 unknown function unknown function -1 516 767
YP_008239941.1 NC_021780_p40 tail fiber protein phrog_7049 tail fiber protein tail -1 25654 26394
YP_008239914.1 NC_021780_p13 hypothetical protein phrog_7734 unknown function unknown function 1 6715 7050
YP_008239954.1 NC_021780_p53 hypothetical protein phrog_7559 unknown function unknown function -1 41012 41305
YP_008239967.1 NC_021780_p66 hypothetical protein phrog_8318 unknown function unknown function -1 54651 54980
YP_008239970.1 NC_021780_p69 DR0530-like primase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism 1 55970 58552
YP_008239969.1 NC_021780_p68 hypothetical protein phrog_7401 unknown function unknown function 1 55692 55973
YP_008239950.1 NC_021780_p49 hypothetical protein phrog_807 major tail protein with Ig-like domain tail -1 38365 39504
YP_008239938.1 NC_021780_p37 hypothetical protein phrog_2448 unknown function unknown function -1 22631 23650
YP_008239920.1 NC_021780_p19 hypothetical protein phrog_8641 unknown function unknown function 1 9881 10537
YP_008239934.1 NC_021780_p33 hypothetical protein phrog_1026 Rz-like spanin lysis -1 17878 18132
YP_008239964.1 NC_021780_p63 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 50564 52603
YP_008239935.1 NC_021780_p34 lysis protein A phrog_873 endolysin head and packaging -1 18129 18842
YP_008239928.1 NC_021780_p27 hypothetical protein phrog_9301 unknown function unknown function 1 14497 14808
YP_008239936.1 NC_021780_p35 lysis protein B phrog_7686 Rz-like spanin lysis -1 18846 19184
YP_008239946.1 NC_021780_p45 hypothetical protein phrog_1082 tail assembly protein tail -1 31583 33271
YP_008239923.1 NC_021780_p22 hypothetical protein phrog_8209 unknown function unknown function 1 12395 13213
YP_008239944.1 NC_021780_p43 tail assembly protein phrog_1180 tail assembly chaperone tail -1 30513 30743