| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021780 |
Definition |
Salmonella phage FSL SP-088, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chivirus. |
DB of origin |
REFSEQ |
Length |
59454 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
70 |
%GC |
56.44 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008239949.1 | NC_021780_p48 | pre-tape measure frameshift protein G-T | phrog_5260 | tail protein | tail | -1 | 37807 | 38268 |
| YP_008239957.1 | NC_021780_p56 | prohead protease ClpP | phrog_53 | head maturation protease | head and packaging | -1 | 42878 | 44149 |
| YP_008239940.1 | NC_021780_p39 | hypothetical protein | phrog_2448 | unknown function | unknown function | -1 | 24637 | 25644 |
| YP_008239909.1 | NC_021780_p8 | hypothetical protein | phrog_10759 | unknown function | unknown function | -1 | 3572 | 4054 |
| YP_008239959.1 | NC_021780_p58 | head-tail joining protein lambda W | phrog_75 | head-tail adaptor Ad1 | connector | -1 | 45867 | 46121 |
| YP_008239961.1 | NC_021780_p60 | TerS | phrog_141 | terminase small subunit | head and packaging | -1 | 48197 | 48766 |
| YP_008239911.1 | NC_021780_p10 | hypothetical protein | phrog_4445 | unknown function | unknown function | -1 | 4825 | 5085 |
| YP_008239955.1 | NC_021780_p54 | capsid protein E | phrog_29 | major head protein | head and packaging | -1 | 41367 | 42431 |
| YP_008239918.1 | NC_021780_p17 | hypothetical protein | phrog_7587 | unknown function | unknown function | 1 | 8673 | 8948 |
| YP_008239958.1 | NC_021780_p57 | portal protein | phrog_21 | portal protein | head and packaging | -1 | 44191 | 45870 |
| YP_008239906.1 | NC_021780_p5 | hypothetical protein | phrog_10087 | unknown function | unknown function | -1 | 1496 | 2665 |
| YP_008239933.1 | NC_021780_p32 | nucleoside 2-deoxyribosyltransferase | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 17286 | 17747 |
| YP_008239916.1 | NC_021780_p15 | exonuclease RdgC | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | 1 | 7359 | 8432 |
| YP_008239931.1 | NC_021780_p30 | hypothetical protein | phrog_25081 | unknown function | unknown function | 1 | 16128 | 16355 |
| YP_008239939.1 | NC_021780_p38 | hypothetical protein | phrog_2448 | unknown function | unknown function | -1 | 23664 | 24626 |
| YP_008239915.1 | NC_021780_p14 | hypothetical protein | phrog_7965 | unknown function | unknown function | 1 | 7037 | 7378 |
| YP_008239913.1 | NC_021780_p12 | hypothetical protein | phrog_7942 | unknown function | unknown function | 1 | 6288 | 6728 |
| YP_008239908.1 | NC_021780_p7 | hypothetical protein | phrog_9514 | unknown function | unknown function | -1 | 3009 | 3557 |
| YP_008239927.1 | NC_021780_p26 | hypothetical protein | phrog_3012 | unknown function | unknown function | 1 | 14219 | 14500 |
| YP_008239929.1 | NC_021780_p28 | hypothetical protein | phrog_8264 | unknown function | unknown function | 1 | 14805 | 15257 |
| YP_008239965.1 | NC_021780_p64 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 52670 | 53266 |
| YP_008239948.1 | NC_021780_p47 | pre-tape measure frameshift protein G-T | phrog_9221 | tail length tape measure protein | tail | -1 | 37565 | 37762 |
| YP_008239932.1 | NC_021780_p31 | NinC protein | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 16375 | 17289 |
| YP_008239905.1 | NC_021780_p4 | hypothetical protein | phrog_3786 | unknown function | unknown function | -1 | 1213 | 1485 |
| YP_008239956.1 | NC_021780_p55 | decorator protein D | phrog_49 | head decoration | head and packaging | -1 | 42444 | 42848 |
| YP_008239942.1 | NC_021780_p41 | phage tail protein | phrog_6284 | tail protein | tail | -1 | 26394 | 30284 |
| YP_008239910.1 | NC_021780_p9 | hypothetical protein | phrog_3199 | unknown function | unknown function | -1 | 4272 | 4811 |
| YP_008239921.1 | NC_021780_p20 | hypothetical protein | phrog_8386 | unknown function | unknown function | 1 | 10534 | 11634 |
| YP_008239963.1 | NC_021780_p62 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 50275 | 50562 |
| YP_008239947.1 | NC_021780_p46 | tape measure protein | phrog_2335 | tail length tape measure protein | tail | -1 | 33277 | 37572 |
| YP_008239924.1 | NC_021780_p23 | hypothetical protein | phrog_9067 | unknown function | unknown function | 1 | 13224 | 13418 |
| YP_008239903.1 | NC_021780_p2 | hypothetical protein | phrog_7646 | unknown function | unknown function | -1 | 760 | 1011 |
| YP_008239943.1 | NC_021780_p42 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | -1 | 30274 | 30513 |
| YP_008239937.1 | NC_021780_p36 | hypothetical protein | phrog_7226 | unknown function | unknown function | -1 | 19248 | 21377 |
| YP_008239926.1 | NC_021780_p25 | hypothetical protein | phrog_9072 | thymidylate synthase complementing protein | DNA, RNA and nucleotide metabolism | 1 | 13626 | 14138 |
| YP_008239922.1 | NC_021780_p21 | DNA adenine methylase | phrog_111 | DNA methyltransferase | other | 1 | 11634 | 12320 |
| YP_008239907.1 | NC_021780_p6 | hypothetical protein | phrog_8635 | unknown function | unknown function | -1 | 2791 | 3012 |
| YP_008239912.1 | NC_021780_p11 | hypothetical protein | phrog_6647 | unknown function | unknown function | 1 | 5845 | 6216 |
| YP_008239968.1 | NC_021780_p67 | hypothetical protein | phrog_7721 | unknown function | unknown function | -1 | 55043 | 55453 |
| YP_008239962.1 | NC_021780_p61 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 48753 | 50228 |
| YP_008239953.1 | NC_021780_p52 | hypothetical protein | phrog_4858 | unknown function | unknown function | -1 | 40644 | 41009 |
| YP_008239930.1 | NC_021780_p29 | hypothetical protein | phrog_8098 | unknown function | unknown function | 1 | 15259 | 15963 |
| YP_008239917.1 | NC_021780_p16 | hypothetical protein | phrog_7200 | unknown function | unknown function | 1 | 8435 | 8668 |
| YP_008239925.1 | NC_021780_p24 | hypothetical protein | phrog_8705 | unknown function | unknown function | 1 | 13415 | 13636 |
| YP_008239945.1 | NC_021780_p44 | structural phage protein | phrog_778 | tail assembly protein | tail | -1 | 30755 | 31573 |
| YP_008239919.1 | NC_021780_p18 | hypothetical protein | phrog_6886 | unknown function | unknown function | 1 | 9138 | 9884 |
| YP_008239960.1 | NC_021780_p59 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | -1 | 46132 | 48213 |
| YP_008239952.1 | NC_021780_p51 | hypothetical protein | phrog_27 | tail completion or Neck1 protein | connector | -1 | 40018 | 40644 |
| YP_008239904.1 | NC_021780_p3 | hypothetical protein | phrog_8059 | unknown function | unknown function | -1 | 1004 | 1210 |
| YP_008239966.1 | NC_021780_p65 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 53321 | 54658 |
| YP_008239971.1 | NC_021780_p70 | helix-turn-helix XRE-family of transcriptional regulators | phrog_18318 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 58600 | 58926 |
| YP_008239951.1 | NC_021780_p50 | hypothetical protein | phrog_5078 | tail terminator | connector | -1 | 39518 | 40021 |
| YP_008239902.1 | NC_021780_p1 | hypothetical protein | phrog_8116 | unknown function | unknown function | -1 | 516 | 767 |
| YP_008239941.1 | NC_021780_p40 | tail fiber protein | phrog_7049 | tail fiber protein | tail | -1 | 25654 | 26394 |
| YP_008239914.1 | NC_021780_p13 | hypothetical protein | phrog_7734 | unknown function | unknown function | 1 | 6715 | 7050 |
| YP_008239954.1 | NC_021780_p53 | hypothetical protein | phrog_7559 | unknown function | unknown function | -1 | 41012 | 41305 |
| YP_008239967.1 | NC_021780_p66 | hypothetical protein | phrog_8318 | unknown function | unknown function | -1 | 54651 | 54980 |
| YP_008239970.1 | NC_021780_p69 | DR0530-like primase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 55970 | 58552 |
| YP_008239969.1 | NC_021780_p68 | hypothetical protein | phrog_7401 | unknown function | unknown function | 1 | 55692 | 55973 |
| YP_008239950.1 | NC_021780_p49 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | -1 | 38365 | 39504 |
| YP_008239938.1 | NC_021780_p37 | hypothetical protein | phrog_2448 | unknown function | unknown function | -1 | 22631 | 23650 |
| YP_008239920.1 | NC_021780_p19 | hypothetical protein | phrog_8641 | unknown function | unknown function | 1 | 9881 | 10537 |
| YP_008239934.1 | NC_021780_p33 | hypothetical protein | phrog_1026 | Rz-like spanin | lysis | -1 | 17878 | 18132 |
| YP_008239964.1 | NC_021780_p63 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 50564 | 52603 |
| YP_008239935.1 | NC_021780_p34 | lysis protein A | phrog_873 | endolysin | head and packaging | -1 | 18129 | 18842 |
| YP_008239928.1 | NC_021780_p27 | hypothetical protein | phrog_9301 | unknown function | unknown function | 1 | 14497 | 14808 |
| YP_008239936.1 | NC_021780_p35 | lysis protein B | phrog_7686 | Rz-like spanin | lysis | -1 | 18846 | 19184 |
| YP_008239946.1 | NC_021780_p45 | hypothetical protein | phrog_1082 | tail assembly protein | tail | -1 | 31583 | 33271 |
| YP_008239923.1 | NC_021780_p22 | hypothetical protein | phrog_8209 | unknown function | unknown function | 1 | 12395 | 13213 |
| YP_008239944.1 | NC_021780_p43 | tail assembly protein | phrog_1180 | tail assembly chaperone | tail | -1 | 30513 | 30743 |