| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021784 |
Definition |
Phage phi OH2 DNA, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
38099 |
Host Name |
Thermus thermophilus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
60 |
%GC |
44.68 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008240359.1 | NC_021784_p55 | immunity repressor protein (phage-like protein) | phrog_8 | transcriptional regulator | transcription regulation | 1 | 34527 | 34994 |
| YP_008240357.1 | NC_021784_p53 | prophage antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | -1 | 33363 | 34118 |
| YP_008240335.1 | NC_021784_p31 | predicted amidophosphoribosyltransferase | phrog_16932 | unknown function | unknown function | -1 | 20942 | 22147 |
| YP_008240338.1 | NC_021784_p34 | RecA/RadA recombinase | phrog_20919 | recombinase | other | -1 | 24057 | 24266 |
| YP_008240321.1 | NC_021784_p17 | hypothetical protein | phrog_966 | unknown function | unknown function | -1 | 12511 | 12693 |
| YP_008240317.1 | NC_021784_p13 | phage tape measure protein | phrog_1068 | tail length tape measure protein | tail | -1 | 7875 | 10133 |
| YP_008240348.1 | NC_021784_p44 | hypothetical protein | phrog_5984 | unknown function | unknown function | -1 | 29832 | 30017 |
| YP_008240312.1 | NC_021784_p8 | baseplate J | phrog_6 | baseplate wedge subunit | tail | -1 | 4538 | 5578 |
| YP_008240322.1 | NC_021784_p18 | hypothetical protein | phrog_525 | unknown function | unknown function | -1 | 12677 | 13084 |
| YP_008240363.1 | NC_021784_p59 | hypothetical protein | phrog_15228 | unknown function | unknown function | 1 | 36694 | 36867 |
| YP_008240358.1 | NC_021784_p54 | predicted transcriptional regulator | phrog_3642 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 34090 | 34362 |
| YP_008240307.1 | NC_021784_p3 | phage-related holin | phrog_199 | holin | lysis | -1 | 1491 | 1910 |
| YP_008240362.1 | NC_021784_p58 | ATPase related to the helicase subunit of the Holliday junction resolvase | phrog_23021 | ATPase | other | -1 | 36299 | 36520 |
| YP_008240325.1 | NC_021784_p21 | hypothetical protein | phrog_132 | head-tail adaptor | connector | -1 | 13839 | 14180 |
| YP_008240356.1 | NC_021784_p52 | hypothetical protein | phrog_3882 | unknown function | unknown function | -1 | 33200 | 33349 |
| YP_008240306.1 | NC_021784_p2 | bacteriophage SPbeta N-acetylmuramoyl-L-alanine amidase | phrog_9611 | endolysin | lysis | -1 | 826 | 1494 |
| YP_008240355.1 | NC_021784_p51 | hypothetical protein | phrog_2211 | unknown function | unknown function | 1 | 32894 | 33211 |
| YP_008240341.1 | NC_021784_p37 | hypothetical protein | phrog_23240 | unknown function | unknown function | -1 | 25865 | 26077 |
| YP_008240351.1 | NC_021784_p47 | hypothetical protein | phrog_3910 | transcriptional regulator | transcription regulation | -1 | 31260 | 31598 |
| YP_008240324.1 | NC_021784_p20 | hypothetical protein | phrog_615 | head-tail adaptor | connector | -1 | 13472 | 13837 |
| YP_008240328.1 | NC_021784_p24 | methyl-accepting chemotaxis protein scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | -1 | 15179 | 15736 |
| YP_008240346.1 | NC_021784_p42 | XkdB protein | phrog_7498 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | -1 | 27875 | 28795 |
| YP_008240313.1 | NC_021784_p9 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | -1 | 5571 | 5984 |
| YP_008240344.1 | NC_021784_p40 | hypothetical protein | phrog_3407 | unknown function | unknown function | -1 | 26866 | 27087 |
| YP_008240334.1 | NC_021784_p30 | ABC-type proline/glycine betaine transport system, ATPase component | phrog_23181 | ATPase | other | -1 | 20657 | 20869 |
| YP_008240347.1 | NC_021784_p43 | RecT protein | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 28971 | 29816 |
| YP_008240330.1 | NC_021784_p26 | SPP1 family phage head morphogenesis protein | phrog_115 | minor head protein | head and packaging | -1 | 16059 | 17516 |
| YP_008240318.1 | NC_021784_p14 | hypothetical protein | phrog_389 | tail protein XkdN-like | tail | -1 | 10317 | 10718 |
| YP_008240305.1 | NC_021784_p1 | small-conductance mechanosensitive channel | phrog_20920 | unknown function | unknown function | -1 | 355 | 702 |
| YP_008240332.1 | NC_021784_p28 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 18947 | 20209 |
| YP_008240360.1 | NC_021784_p56 | predicted Zn peptidase | phrog_87 | metallo-protease | other | 1 | 35015 | 35455 |
| YP_008240340.1 | NC_021784_p36 | endodeoxyribonuclease RusA | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 25198 | 25617 |
| YP_008240350.1 | NC_021784_p46 | hypothetical protein | phrog_4331 | unknown function | unknown function | -1 | 31063 | 31263 |
| YP_008240352.1 | NC_021784_p48 | hypothetical protein | phrog_6048 | unknown function | unknown function | -1 | 31948 | 32211 |
| YP_008240336.1 | NC_021784_p32 | SMF family protein | phrog_38708 | unknown function | unknown function | -1 | 22176 | 23408 |
| YP_008240310.1 | NC_021784_p6 | hypothetical protein | phrog_28171 | unknown function | unknown function | -1 | 2517 | 3947 |
| YP_008240333.1 | NC_021784_p29 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | -1 | 20196 | 20636 |
| YP_008240323.1 | NC_021784_p19 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 13074 | 13472 |
| YP_008240320.1 | NC_021784_p16 | sheath tail protein | phrog_279 | tail sheath | tail | -1 | 11213 | 12511 |
| YP_008240331.1 | NC_021784_p27 | phage portal protein, SPP1 | phrog_64 | portal protein | head and packaging | -1 | 17509 | 18933 |
| YP_008240349.1 | NC_021784_p45 | phage-type endonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | -1 | 30018 | 30953 |
| YP_008240342.1 | NC_021784_p38 | DUTPase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 26067 | 26576 |
| YP_008240329.1 | NC_021784_p25 | hypothetical protein | phrog_1865 | unknown function | unknown function | -1 | 15868 | 16062 |
| YP_008240308.1 | NC_021784_p4 | hypothetical protein | phrog_5056 | unknown function | unknown function | -1 | 1996 | 2130 |
| YP_008240345.1 | NC_021784_p41 | IstB domain-containing protein ATP-binding protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | -1 | 27091 | 27933 |
| YP_008240326.1 | NC_021784_p22 | hypothetical protein | phrog_37956 | unknown function | unknown function | -1 | 14183 | 14326 |
| YP_008240314.1 | NC_021784_p10 | hypothetical protein | phrog_579 | unknown function | unknown function | -1 | 5984 | 6241 |
| YP_008240311.1 | NC_021784_p7 | hypothetical protein | phrog_521 | tail protein | tail | -1 | 3953 | 4537 |
| YP_008240354.1 | NC_021784_p50 | hypothetical protein | phrog_668 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32503 | 32811 |
| YP_008240361.1 | NC_021784_p57 | hypothetical protein | phrog_15646 | unknown function | unknown function | 1 | 35456 | 36307 |
| YP_008240337.1 | NC_021784_p33 | phage transcriptional regulator, ArpU | phrog_248 | transcriptional activator | transcription regulation | -1 | 23526 | 23978 |
| YP_008240343.1 | NC_021784_p39 | hypothetical protein | phrog_14865 | unknown function | unknown function | -1 | 26715 | 26891 |
| YP_008240339.1 | NC_021784_p35 | predicted xylanase/chitin deacetylase | phrog_27911 | unknown function | unknown function | -1 | 24438 | 25187 |
| YP_008240316.1 | NC_021784_p12 | peptidoglycan-binding lysin domain-containing | phrog_380 | endolysin | lysis | -1 | 7204 | 7875 |
| YP_008240364.1 | NC_021784_p60 | integrase | phrog_1 | integrase | integration and excision | 1 | 36870 | 38054 |
| YP_008240309.1 | NC_021784_p5 | rhodanese-related sulfurtransferase | phrog_3321 | rhodanese-related sulfurtransferase | other | -1 | 2132 | 2506 |
| YP_008240327.1 | NC_021784_p23 | hypothetical protein | phrog_422 | major head protein | head and packaging | -1 | 14340 | 15158 |
| YP_008240319.1 | NC_021784_p15 | core tail protein | phrog_365 | tail protein | tail | -1 | 10730 | 11194 |
| YP_008240315.1 | NC_021784_p11 | hypothetical protein | phrog_400 | tail protein | tail | -1 | 6243 | 7160 |
| YP_008240353.1 | NC_021784_p49 | hypothetical protein | phrog_26597 | unknown function | unknown function | -1 | 32225 | 32503 |