| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021785 |
Definition |
Listeria phage LP-110, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Homburgvirus. |
DB of origin |
REFSEQ |
Length |
65132 |
Host Name |
Listeria |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
113 |
%GC |
36.34 |
Number of singletons |
2 |
Number of paralogs |
9 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008240404.1 | NC_021785_p40 | hypothetical protein | phrog_17911 | unknown function | unknown function | -1 | 16150 | 16395 |
| YP_008240456.1 | NC_021785_p93 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 50800 | 51582 |
| YP_008240422.1 | NC_021785_p58 | hypothetical protein | phrog_10628 | unknown function | unknown function | -1 | 21464 | 21700 |
| YP_008240369.1 | NC_021785_p5 | hypothetical protein | phrog_17753 | unknown function | unknown function | 1 | 1995 | 2456 |
| YP_008240431.1 | NC_021785_p67 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 28362 | 29705 |
| YP_008240403.1 | NC_021785_p39 | hypothetical protein | phrog_2316 | unknown function | unknown function | -1 | 15833 | 16129 |
| YP_008240407.1 | NC_021785_p43 | hypothetical protein | phrog_20263 | unknown function | unknown function | -1 | 17195 | 17392 |
| YP_008997833.1 | NC_021785_p90 | hypothetical protein | phrog_18039 | unknown function | unknown function | -1 | 49333 | 49533 |
| YP_008240467.1 | NC_021785_p104 | hypothetical protein | phrog_18628 | unknown function | unknown function | 1 | 60208 | 60900 |
| YP_008240367.1 | NC_021785_p3 | hypothetical protein | phrog_17084 | unknown function | unknown function | 1 | 1099 | 1578 |
| YP_008240457.1 | NC_021785_p94 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 51583 | 52911 |
| YP_008240394.1 | NC_021785_p30 | DUF1642 domain protein | phrog_121 | unknown function | unknown function | -1 | 12710 | 13096 |
| YP_008240448.1 | NC_021785_p84 | hypothetical protein | phrog_7571 | unknown function | unknown function | -1 | 46395 | 46595 |
| YP_008240384.1 | NC_021785_p19 | hypothetical protein | phrog_4264 | unknown function | unknown function | 1 | 7768 | 8115 |
| YP_008240465.1 | NC_021785_p102 | sigma factor | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59380 | 59745 |
| YP_008240424.1 | NC_021785_p60 | hypothetical protein | phrog_17111 | unknown function | unknown function | -1 | 22142 | 22528 |
| YP_008240383.1 | NC_021785_p18 | hypothetical protein | phrog_17278 | unknown function | unknown function | 1 | 7556 | 7756 |
| YP_008240372.1 | NC_021785_p8 | hypothetical protein | phrog_18681 | unknown function | unknown function | 1 | 3151 | 3333 |
| YP_008240401.1 | NC_021785_p37 | hypothetical protein | phrog_6406 | unknown function | unknown function | -1 | 15214 | 15444 |
| YP_008240406.1 | NC_021785_p42 | hypothetical protein | phrog_21092 | unknown function | unknown function | -1 | 16992 | 17192 |
| YP_008240376.1 | NC_021785_p12 | hypothetical protein | phrog_17786 | unknown function | unknown function | 1 | 4619 | 4927 |
| YP_008240425.1 | NC_021785_p61 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 22850 | 23350 |
| YP_008240368.1 | NC_021785_p4 | hypothetical protein | phrog_17542 | unknown function | unknown function | 1 | 1568 | 2002 |
| YP_008240421.1 | NC_021785_p57 | hypothetical protein | phrog_17836 | unknown function | unknown function | -1 | 21218 | 21451 |
| YP_008240400.1 | NC_021785_p36 | hypothetical protein | phrog_18615 | unknown function | unknown function | -1 | 14892 | 15170 |
| YP_008240393.1 | NC_021785_p29 | hypothetical protein | phrog_17830 | unknown function | unknown function | -1 | 12570 | 12713 |
| YP_008240463.1 | NC_021785_p100 | crossover junction endodeoxyribonuclease | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 58340 | 58852 |
| YP_008240440.1 | NC_021785_p76 | hypothetical protein | phrog_17081 | unknown function | unknown function | 1 | 35808 | 36194 |
| YP_008240413.1 | NC_021785_p49 | hypothetical protein | phrog_18373 | unknown function | unknown function | -1 | 19290 | 19499 |
| YP_008240388.1 | NC_021785_p23 | hypothetical protein | phrog_18690 | unknown function | unknown function | 1 | 9949 | 10248 |
| YP_008997832.1 | NC_021785_p24 | hypothetical protein | phrog_27735 | unknown function | unknown function | 1 | 10649 | 10774 |
| YP_008240450.1 | NC_021785_p86 | hypothetical protein | phrog_18550 | unknown function | unknown function | -1 | 46949 | 47149 |
| YP_008240391.1 | NC_021785_p27 | hypothetical protein | phrog_16767 | unknown function | unknown function | -1 | 11823 | 12008 |
| YP_008240429.1 | NC_021785_p65 | holin | phrog_297 | holin | lysis | 1 | 27062 | 27346 |
| YP_008240460.1 | NC_021785_p97 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 54383 | 56650 |
| YP_008240381.1 | NC_021785_p16 | hypothetical protein | phrog_5149 | unknown function | unknown function | 1 | 7028 | 7270 |
| YP_008240398.1 | NC_021785_p34 | hypothetical protein | phrog_1666 | unknown function | unknown function | -1 | 14139 | 14396 |
| YP_008240476.1 | NC_021785_p113 | hypothetical protein | phrog_17097 | unknown function | unknown function | 1 | 64866 | 65075 |
| YP_008240416.1 | NC_021785_p52 | hypothetical protein | phrog_6406 | unknown function | unknown function | -1 | 20009 | 20254 |
| YP_008240382.1 | NC_021785_p17 | hypothetical protein | phrog_16753 | unknown function | unknown function | 1 | 7263 | 7556 |
| YP_008240454.1 | NC_021785_p91 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 49839 | 50342 |
| YP_008240396.2 | NC_021785_p32 | hypothetical protein | phrog_19990 | unknown function | unknown function | -1 | 13812 | 13976 |
| YP_008240446.1 | NC_021785_p82 | tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 41457 | 43547 |
| YP_008240415.1 | NC_021785_p51 | hypothetical protein | phrog_6406 | unknown function | unknown function | -1 | 19765 | 20019 |
| YP_008240474.1 | NC_021785_p111 | hypothetical protein | phrog_17535 | unknown function | unknown function | 1 | 63956 | 64636 |
| YP_008240461.1 | NC_021785_p98 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 56706 | 57317 |
| YP_008240397.1 | NC_021785_p33 | hypothetical protein | phrog_23978 | unknown function | unknown function | -1 | 13987 | 14142 |
| YP_008240445.1 | NC_021785_p81 | tail tape measure protein | phrog_1533 | tail length tape measure protein | tail | 1 | 38541 | 41453 |
| YP_008240366.1 | NC_021785_p2 | hypothetical protein | phrog_21823 | unknown function | unknown function | 1 | 791 | 1018 |
| YP_008240402.1 | NC_021785_p38 | His-Me finger endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 15458 | 15769 |
| YP_008240469.1 | NC_021785_p106 | hypothetical protein | phrog_19802 | unknown function | unknown function | 1 | 61103 | 61369 |
| YP_008240441.1 | NC_021785_p77 | DUF3168 domain protein | phrog_176 | tail terminator | connector | 1 | 36194 | 36613 |
| YP_008240414.1 | NC_021785_p50 | hypothetical protein | phrog_17919 | unknown function | unknown function | -1 | 19513 | 19713 |
| YP_008240466.1 | NC_021785_p103 | hypothetical protein | phrog_18507 | unknown function | unknown function | 1 | 59705 | 60115 |
| YP_008240408.1 | NC_021785_p44 | hypothetical protein | phrog_559 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 17435 | 18139 |
| YP_008240437.1 | NC_021785_p73 | fibronectin type III domain containing protein | phrog_18435 | unknown function | unknown function | 1 | 34102 | 34980 |
| YP_008240386.1 | NC_021785_p21 | hypothetical protein | phrog_18105 | unknown function | unknown function | 1 | 8626 | 8931 |
| YP_008240399.1 | NC_021785_p35 | hypothetical protein | phrog_20947 | unknown function | unknown function | -1 | 14398 | 14892 |
| YP_008240455.1 | NC_021785_p92 | hypothetical protein | phrog_6154 | unknown function | unknown function | 1 | 50398 | 50781 |
| YP_008240420.1 | NC_021785_p56 | hypothetical protein | phrog_10628 | unknown function | unknown function | -1 | 20955 | 21206 |
| YP_008240412.1 | NC_021785_p48 | hypothetical protein | phrog_18191 | unknown function | unknown function | -1 | 19035 | 19277 |
| YP_008240464.1 | NC_021785_p101 | P-loop containing nucleoside triphosphate hydrolase | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 58854 | 59402 |
| YP_008240417.1 | NC_021785_p53 | hypothetical protein | phrog_6406 | unknown function | unknown function | -1 | 20247 | 20492 |
| YP_008240471.1 | NC_021785_p108 | AAA_5 domain containing protein | phrog_249 | porphyrin biosynthesis | moron, auxiliary metabolic gene and host takeover | 1 | 61744 | 62766 |
| YP_008240475.1 | NC_021785_p112 | hypothetical protein | phrog_18570 | unknown function | unknown function | 1 | 64640 | 64873 |
| YP_008240459.1 | NC_021785_p96 | hypothetical protein | phrog_17905 | methyltransferase | other | 1 | 53947 | 54402 |
| YP_008240379.1 | NC_021785_p14 | hypothetical protein | phrog_18584 | unknown function | unknown function | 1 | 6261 | 6494 |
| YP_008240427.1 | NC_021785_p63 | DUF2479 domain containing protein | phrog_18602 | virion structural protein | head and packaging | 1 | 25264 | 26703 |
| YP_008240365.1 | NC_021785_p1 | hypothetical protein | phrog_18431 | unknown function | unknown function | 1 | 16 | 804 |
| YP_008240395.1 | NC_021785_p31 | DUF1642 domain containing protein | phrog_121 | unknown function | unknown function | -1 | 13096 | 13728 |
| YP_008240438.1 | NC_021785_p74 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 35058 | 35417 |
| YP_008240434.1 | NC_021785_p70 | DUF4355 domain containing protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 32248 | 32889 |
| YP_008240436.1 | NC_021785_p72 | hypothetical protein | phrog_17541 | unknown function | unknown function | 1 | 33891 | 34088 |
| YP_008240418.1 | NC_021785_p54 | hypothetical protein | phrog_10526 | unknown function | unknown function | -1 | 20489 | 20722 |
| YP_008240385.1 | NC_021785_p20 | hypothetical protein | phrog_7822 | unknown function | unknown function | 1 | 8187 | 8633 |
| YP_008240428.1 | NC_021785_p64 | hypothetical protein | phrog_1009 | unknown function | unknown function | 1 | 26727 | 27065 |
| YP_008240439.1 | NC_021785_p75 | hypothetical protein | phrog_16721 | unknown function | unknown function | 1 | 35414 | 35830 |
| YP_008240374.1 | NC_021785_p10 | hypothetical protein | phrog_7296 | unknown function | unknown function | 1 | 3553 | 4062 |
| YP_008240419.1 | NC_021785_p55 | hypothetical protein | phrog_10526 | unknown function | unknown function | -1 | 20725 | 20952 |
| YP_008240411.1 | NC_021785_p47 | hypothetical protein | phrog_18055 | unknown function | unknown function | -1 | 18825 | 19025 |
| YP_008240426.1 | NC_021785_p62 | DUF2479 domain containing protein | phrog_3639 | minor tail protein | tail | 1 | 23353 | 25251 |
| YP_008240387.1 | NC_021785_p22 | LPXTG cell wall anchor domain containing protein | phrog_16892 | unknown function | unknown function | 1 | 8992 | 9816 |
| YP_008240392.1 | NC_021785_p28 | hypothetical protein | phrog_16663 | unknown function | unknown function | -1 | 11998 | 12555 |
| YP_008240373.1 | NC_021785_p9 | hypothetical protein | phrog_6414 | unknown function | unknown function | 1 | 3340 | 3531 |
| YP_008240423.1 | NC_021785_p59 | hypothetical protein | phrog_17491 | unknown function | unknown function | -1 | 21690 | 22133 |
| YP_008240380.1 | NC_021785_p15 | hypothetical protein | phrog_17663 | unknown function | unknown function | 1 | 6597 | 6929 |
| YP_008240458.1 | NC_021785_p95 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 52988 | 53953 |
| YP_008240405.1 | NC_021785_p41 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16396 | 16995 |
| YP_008240443.1 | NC_021785_p79 | hypothetical protein | phrog_18667 | unknown function | unknown function | 1 | 37427 | 37735 |
| YP_008240470.1 | NC_021785_p107 | hypothetical protein | phrog_17709 | unknown function | unknown function | 1 | 61444 | 61722 |
| YP_008240433.1 | NC_021785_p69 | capsid morphogenesis protein | phrog_8089 | head morphogenesis | head and packaging | 1 | 31394 | 32179 |
| YP_008240451.1 | NC_021785_p87 | hypothetical protein | phrog_6883 | unknown function | unknown function | -1 | 47162 | 47869 |
| YP_008240435.1 | NC_021785_p71 | major capsid protein | phrog_544 | major head protein | head and packaging | 1 | 32920 | 33825 |
| YP_008240452.1 | NC_021785_p88 | hypothetical protein | phrog_17927 | unknown function | unknown function | -1 | 48116 | 48634 |
| YP_008240432.1 | NC_021785_p68 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 29738 | 31387 |
| YP_008240453.1 | NC_021785_p89 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48631 | 48747 |
| YP_008240442.1 | NC_021785_p78 | major tail protein | phrog_41 | major tail protein | tail | 1 | 36637 | 37347 |
| YP_008240389.1 | NC_021785_p25 | hypothetical protein | phrog_17121 | unknown function | unknown function | -1 | 11427 | 11621 |
| YP_008240447.1 | NC_021785_p83 | minor structural protein | phrog_17797 | tail protein | tail | 1 | 43559 | 46348 |
| YP_008240370.1 | NC_021785_p6 | thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 2456 | 2722 |
| YP_008240462.1 | NC_021785_p99 | hypothetical protein | phrog_1706 | CRISPR/Cas system associated | DNA, RNA and nucleotide metabolism | 1 | 57318 | 58343 |
| YP_008240377.1 | NC_021785_p13 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 4924 | 5442 |
| YP_008240430.1 | NC_021785_p66 | endolysin | phrog_5115 | ferredoxin | moron, auxiliary metabolic gene and host takeover | 1 | 27346 | 28293 |
| YP_008240444.1 | NC_021785_p80 | hypothetical protein | phrog_17465 | unknown function | unknown function | 1 | 37798 | 38541 |
| YP_008240409.1 | NC_021785_p45 | hypothetical protein | phrog_27701 | unknown function | unknown function | -1 | 18187 | 18402 |
| YP_008240472.1 | NC_021785_p109 | hypothetical protein | phrog_7005 | unknown function | unknown function | 1 | 62785 | 63696 |
| YP_008240371.1 | NC_021785_p7 | hypothetical protein | phrog_18081 | unknown function | unknown function | 1 | 2715 | 3044 |
| YP_008240449.1 | NC_021785_p85 | hypothetical protein | phrog_17281 | unknown function | unknown function | -1 | 46588 | 46959 |
| YP_008240473.1 | NC_021785_p110 | hypothetical protein | phrog_18040 | unknown function | unknown function | 1 | 63697 | 63963 |
| YP_008240375.1 | NC_021785_p11 | hypothetical protein | phrog_7296 | unknown function | unknown function | 1 | 4077 | 4622 |
| YP_008240390.1 | NC_021785_p26 | hypothetical protein | phrog_34951 | unknown function | unknown function | -1 | 11638 | 11802 |
| YP_008240410.1 | NC_021785_p46 | hypothetical protein | phrog_681 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 18381 | 18776 |
| YP_008240468.1 | NC_021785_p105 | hypothetical protein | phrog_17749 | unknown function | unknown function | 1 | 60916 | 61140 |