| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021801 |
Definition |
Staphylococcus phage SA12, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus. |
DB of origin |
REFSEQ |
Length |
42902 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
34.54 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008241880.1 | NC_021801_p19 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 9837 | 10043 |
| YP_008241871.1 | NC_021801_p10 | regulatory protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 6171 | 7058 |
| YP_008241863.1 | NC_021801_p2 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 984 | 1151 |
| YP_008241888.1 | NC_021801_p27 | hypothetical protein | phrog_1431 | unknown function | unknown function | 1 | 15321 | 15491 |
| YP_008241886.1 | NC_021801_p25 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 12708 | 14246 |
| YP_008241881.1 | NC_021801_p20 | transcriptional activator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 10040 | 10213 |
| YP_008241877.1 | NC_021801_p16 | hypothetical protein | phrog_1034 | unknown function | unknown function | 1 | 8746 | 9030 |
| YP_008241902.1 | NC_021801_p41 | minor structural protein 2 | phrog_287 | minor tail protein | tail | 1 | 26666 | 28576 |
| YP_008241901.1 | NC_021801_p40 | minor structural protein 1 | phrog_663 | minor head protein | head and packaging | 1 | 24750 | 26651 |
| YP_008241882.1 | NC_021801_p21 | hypothetical protein | phrog_1367 | unknown function | unknown function | 1 | 10214 | 10360 |
| YP_008241914.1 | NC_021801_p53 | hypothetical protein | phrog_1412 | antitoxin mazE-like | moron, auxiliary metabolic gene and host takeover | -1 | 39563 | 40243 |
| YP_008241915.1 | NC_021801_p54 | cI-like repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 40279 | 40998 |
| YP_008241911.1 | NC_021801_p50 | endolysin | phrog_635 | endolysin | lysis | 1 | 35389 | 36834 |
| YP_008241889.1 | NC_021801_p28 | hypothetical protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 15600 | 16220 |
| YP_008241884.1 | NC_021801_p23 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 10993 | 11433 |
| YP_008241870.1 | NC_021801_p9 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 5671 | 6141 |
| YP_008241876.1 | NC_021801_p15 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 8348 | 8749 |
| YP_008241910.1 | NC_021801_p49 | holin | phrog_962 | holin | lysis | 1 | 34971 | 35408 |
| YP_008241905.1 | NC_021801_p44 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 30777 | 30953 |
| YP_008241862.1 | NC_021801_p1 | hypothetical protein | phrog_7948 | unknown function | unknown function | -1 | 157 | 804 |
| YP_008241895.1 | NC_021801_p34 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 18516 | 18899 |
| YP_008241904.1 | NC_021801_p43 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 30399 | 30776 |
| YP_008241891.1 | NC_021801_p30 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 17230 | 17517 |
| YP_008241887.1 | NC_021801_p26 | head morphogenesis protein | phrog_115 | minor head protein | head and packaging | 1 | 14253 | 15248 |
| YP_008241866.1 | NC_021801_p5 | hypothetical protein | phrog_2527 | unknown function | unknown function | 1 | 1820 | 2098 |
| YP_008241868.1 | NC_021801_p7 | RecT family recombinase | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 4052 | 4972 |
| YP_008241900.1 | NC_021801_p39 | minor tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 23794 | 24741 |
| YP_008241883.1 | NC_021801_p22 | transcriptional activator RinA | phrog_36 | transcriptional regulator | transcription regulation | 1 | 10384 | 10806 |
| YP_008241909.1 | NC_021801_p48 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 34519 | 34914 |
| YP_008241907.1 | NC_021801_p46 | mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 31430 | 33328 |
| YP_008241897.1 | NC_021801_p36 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 19561 | 19926 |
| YP_008241874.1 | NC_021801_p13 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 7709 | 8086 |
| YP_008241917.1 | NC_021801_p56 | hypothetical protein | phrog_21676 | unknown function | unknown function | 1 | 41373 | 41681 |
| YP_008241894.1 | NC_021801_p33 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 18157 | 18504 |
| YP_008241875.1 | NC_021801_p14 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 8087 | 8335 |
| YP_008241913.1 | NC_021801_p52 | integrase | phrog_95 | integrase | integration and excision | -1 | 37971 | 39356 |
| YP_008241916.1 | NC_021801_p55 | cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 41140 | 41358 |
| YP_008241879.1 | NC_021801_p18 | dUTP diphosphatase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 9264 | 9800 |
| YP_008241903.1 | NC_021801_p42 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 28576 | 30399 |
| YP_008241919.1 | NC_021801_p58 | hypothetical protein | phrog_1796 | unknown function | unknown function | 1 | 42630 | 42854 |
| YP_008241864.1 | NC_021801_p3 | hypothetical protein | phrog_9362 | unknown function | unknown function | 1 | 1152 | 1472 |
| YP_008241896.1 | NC_021801_p35 | major tail protein | phrog_238 | major tail protein | tail | 1 | 18918 | 19499 |
| YP_008241890.1 | NC_021801_p29 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 16234 | 17208 |
| YP_008241869.1 | NC_021801_p8 | hypothetical protein | phrog_392 | metal-dependent hydrolase | other | 1 | 5185 | 5670 |
| YP_008241899.1 | NC_021801_p38 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 20317 | 23781 |
| YP_008241892.1 | NC_021801_p31 | head-tail connector protein | phrog_132 | head-tail adaptor | connector | 1 | 17526 | 17858 |
| YP_008241867.1 | NC_021801_p6 | hypothetical protein | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2107 | 4050 |
| YP_008241912.1 | NC_021801_p51 | hypothetical protein | phrog_1529 | unknown function | unknown function | 1 | 37412 | 37597 |
| YP_008241908.1 | NC_021801_p47 | tail fiber protein | phrog_1125 | tail fiber protein | tail | 1 | 33341 | 34513 |
| YP_008241872.1 | NC_021801_p11 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 7065 | 7283 |
| YP_008241906.1 | NC_021801_p45 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 30994 | 31293 |
| YP_008241918.1 | NC_021801_p57 | anti-repressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 41838 | 42629 |
| YP_008241898.1 | NC_021801_p37 | hypothetical protein | phrog_441 | tail assembly chaperone | tail | 1 | 19956 | 20300 |
| YP_008241865.1 | NC_021801_p4 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 1566 | 1826 |
| YP_008241893.1 | NC_021801_p32 | hypothetical protein | phrog_348 | minor head protein | head and packaging | 1 | 17855 | 18157 |
| YP_008241885.1 | NC_021801_p24 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 11420 | 12697 |
| YP_008241873.1 | NC_021801_p12 | endodeoxyribonuclease RusA family protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 7292 | 7696 |
| YP_008241878.1 | NC_021801_p17 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 9023 | 9271 |