Genomic map of Staphylococcus phage SA12 (NC_021801)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021801
Definition
Staphylococcus phage SA12, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus.
DB of origin
REFSEQ
Length
42902
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
58
%GC
34.54
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008241880.1 NC_021801_p19 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 9837 10043
YP_008241871.1 NC_021801_p10 regulatory protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 6171 7058
YP_008241863.1 NC_021801_p2 hypothetical protein phrog_369 unknown function unknown function 1 984 1151
YP_008241888.1 NC_021801_p27 hypothetical protein phrog_1431 unknown function unknown function 1 15321 15491
YP_008241886.1 NC_021801_p25 portal protein phrog_64 portal protein head and packaging 1 12708 14246
YP_008241881.1 NC_021801_p20 transcriptional activator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 10040 10213
YP_008241877.1 NC_021801_p16 hypothetical protein phrog_1034 unknown function unknown function 1 8746 9030
YP_008241902.1 NC_021801_p41 minor structural protein 2 phrog_287 minor tail protein tail 1 26666 28576
YP_008241901.1 NC_021801_p40 minor structural protein 1 phrog_663 minor head protein head and packaging 1 24750 26651
YP_008241882.1 NC_021801_p21 hypothetical protein phrog_1367 unknown function unknown function 1 10214 10360
YP_008241914.1 NC_021801_p53 hypothetical protein phrog_1412 antitoxin mazE-like moron, auxiliary metabolic gene and host takeover -1 39563 40243
YP_008241915.1 NC_021801_p54 cI-like repressor phrog_4 transcriptional repressor transcription regulation -1 40279 40998
YP_008241911.1 NC_021801_p50 endolysin phrog_635 endolysin lysis 1 35389 36834
YP_008241889.1 NC_021801_p28 hypothetical protein phrog_172 head scaffolding protein head and packaging 1 15600 16220
YP_008241884.1 NC_021801_p23 terminase small subunit phrog_51 terminase small subunit head and packaging 1 10993 11433
YP_008241870.1 NC_021801_p9 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 5671 6141
YP_008241876.1 NC_021801_p15 hypothetical protein phrog_467 unknown function unknown function 1 8348 8749
YP_008241910.1 NC_021801_p49 holin phrog_962 holin lysis 1 34971 35408
YP_008241905.1 NC_021801_p44 hypothetical protein phrog_134 unknown function unknown function 1 30777 30953
YP_008241862.1 NC_021801_p1 hypothetical protein phrog_7948 unknown function unknown function -1 157 804
YP_008241895.1 NC_021801_p34 hypothetical protein phrog_176 tail terminator connector 1 18516 18899
YP_008241904.1 NC_021801_p43 hypothetical protein phrog_300 tail fiber protein tail 1 30399 30776
YP_008241891.1 NC_021801_p30 hypothetical protein phrog_390 Arc-like repressor transcription regulation 1 17230 17517
YP_008241887.1 NC_021801_p26 head morphogenesis protein phrog_115 minor head protein head and packaging 1 14253 15248
YP_008241866.1 NC_021801_p5 hypothetical protein phrog_2527 unknown function unknown function 1 1820 2098
YP_008241868.1 NC_021801_p7 RecT family recombinase phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 4052 4972
YP_008241900.1 NC_021801_p39 minor tail protein phrog_33 distal tail protein Dit tail 1 23794 24741
YP_008241883.1 NC_021801_p22 transcriptional activator RinA phrog_36 transcriptional regulator transcription regulation 1 10384 10806
YP_008241909.1 NC_021801_p48 hypothetical protein phrog_1262 unknown function unknown function 1 34519 34914
YP_008241907.1 NC_021801_p46 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase phrog_759 tail associated cell-wall hydrolase other 1 31430 33328
YP_008241897.1 NC_021801_p36 hypothetical protein phrog_183 tail chaperone protein tail 1 19561 19926
YP_008241874.1 NC_021801_p13 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 7709 8086
YP_008241917.1 NC_021801_p56 hypothetical protein phrog_21676 unknown function unknown function 1 41373 41681
YP_008241894.1 NC_021801_p33 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 18157 18504
YP_008241875.1 NC_021801_p14 hypothetical protein phrog_258 virulence associated other 1 8087 8335
YP_008241913.1 NC_021801_p52 integrase phrog_95 integrase integration and excision -1 37971 39356
YP_008241916.1 NC_021801_p55 cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 41140 41358
YP_008241879.1 NC_021801_p18 dUTP diphosphatase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 9264 9800
YP_008241903.1 NC_021801_p42 hypothetical protein phrog_257 minor tail protein tail 1 28576 30399
YP_008241919.1 NC_021801_p58 hypothetical protein phrog_1796 unknown function unknown function 1 42630 42854
YP_008241864.1 NC_021801_p3 hypothetical protein phrog_9362 unknown function unknown function 1 1152 1472
YP_008241896.1 NC_021801_p35 major tail protein phrog_238 major tail protein tail 1 18918 19499
YP_008241890.1 NC_021801_p29 major capsid protein phrog_10 major head protein head and packaging 1 16234 17208
YP_008241869.1 NC_021801_p8 hypothetical protein phrog_392 metal-dependent hydrolase other 1 5185 5670
YP_008241899.1 NC_021801_p38 tape measure protein phrog_58 tail length tape measure protein tail 1 20317 23781
YP_008241892.1 NC_021801_p31 head-tail connector protein phrog_132 head-tail adaptor connector 1 17526 17858
YP_008241867.1 NC_021801_p6 hypothetical protein phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 2107 4050
YP_008241912.1 NC_021801_p51 hypothetical protein phrog_1529 unknown function unknown function 1 37412 37597
YP_008241908.1 NC_021801_p47 tail fiber protein phrog_1125 tail fiber protein tail 1 33341 34513
YP_008241872.1 NC_021801_p11 hypothetical protein phrog_433 unknown function unknown function 1 7065 7283
YP_008241906.1 NC_021801_p45 hypothetical protein phrog_276 unknown function unknown function 1 30994 31293
YP_008241918.1 NC_021801_p57 anti-repressor phrog_130 anti-repressor Ant transcription regulation 1 41838 42629
YP_008241898.1 NC_021801_p37 hypothetical protein phrog_441 tail assembly chaperone tail 1 19956 20300
YP_008241865.1 NC_021801_p4 hypothetical protein phrog_401 unknown function unknown function 1 1566 1826
YP_008241893.1 NC_021801_p32 hypothetical protein phrog_348 minor head protein head and packaging 1 17855 18157
YP_008241885.1 NC_021801_p24 terminase large subunit phrog_2 terminase large subunit head and packaging 1 11420 12697
YP_008241873.1 NC_021801_p12 endodeoxyribonuclease RusA family protein phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 7292 7696
YP_008241878.1 NC_021801_p17 hypothetical protein phrog_266 unknown function unknown function 1 9023 9271