| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021804 |
Definition |
Cellulophaga phage phi39:1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
28760 |
Host Name |
Cellulophaga baltica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
31.33 |
Number of singletons |
31 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008242177.1 | NC_021804_p25 | structural protein | singleton | unknown function | unknown function | 1 | 16625 | 18127 |
| YP_008242153.1 | NC_021804_p1 | hypothetical protein | phrog_625 | unknown function | unknown function | 1 | 80 | 475 |
| YP_008242197.1 | NC_021804_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27401 | 27613 |
| YP_008242198.1 | NC_021804_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27626 | 27769 |
| YP_008242196.1 | NC_021804_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27255 | 27407 |
| YP_008242184.1 | NC_021804_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21711 | 21995 |
| YP_008242194.1 | NC_021804_p42 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 25425 | 26936 |
| YP_008242171.1 | NC_021804_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10330 | 10704 |
| YP_008242160.1 | NC_021804_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3916 | 4146 |
| YP_008242190.1 | NC_021804_p38 | hypothetical protein | phrog_11501 | unknown function | unknown function | 1 | 23610 | 24386 |
| YP_008242154.1 | NC_021804_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 496 | 711 |
| YP_008242172.1 | NC_021804_p20 | hypothetical protein | phrog_16333 | unknown function | unknown function | 1 | 10766 | 11056 |
| YP_008242186.1 | NC_021804_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22512 | 22727 |
| YP_008242159.1 | NC_021804_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3671 | 3919 |
| YP_008242181.1 | NC_021804_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20968 | 21069 |
| YP_008242162.1 | NC_021804_p10 | phage portal protein | phrog_12 | portal protein | head and packaging | 1 | 4407 | 5636 |
| YP_008242200.1 | NC_021804_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28297 | 28713 |
| YP_008242180.1 | NC_021804_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20576 | 20965 |
| YP_008242156.1 | NC_021804_p4 | phage terminase small subunit | singleton | terminase small subunit | head and packaging | 1 | 1020 | 1538 |
| YP_008242173.1 | NC_021804_p21 | phage tape measure protein | phrog_28 | tail length tape measure protein | tail | 1 | 11069 | 13249 |
| YP_008242193.1 | NC_021804_p41 | helix-turn-helix domain containing protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 24751 | 25407 |
| YP_008242185.1 | NC_021804_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22265 | 22519 |
| YP_008242188.1 | NC_021804_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22961 | 23125 |
| YP_008242157.1 | NC_021804_p5 | phage terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1545 | 3293 |
| YP_008242174.1 | NC_021804_p22 | structural protein | singleton | unknown function | unknown function | 1 | 13255 | 16062 |
| YP_008242166.1 | NC_021804_p14 | structural protein | phrog_442 | head-tail adaptor | connector | 1 | 8126 | 8674 |
| YP_008242175.1 | NC_021804_p23 | structural protein | singleton | unknown function | unknown function | 1 | 15917 | 16291 |
| YP_008242169.1 | NC_021804_p17 | structural protein | singleton | unknown function | unknown function | 1 | 9480 | 9848 |
| YP_008242158.1 | NC_021804_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3317 | 3622 |
| YP_008242191.1 | NC_021804_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24373 | 24567 |
| YP_008242187.1 | NC_021804_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22714 | 22968 |
| YP_008242199.1 | NC_021804_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27781 | 28293 |
| YP_008242165.1 | NC_021804_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7637 | 8122 |
| YP_008242178.1 | NC_021804_p26 | pectate lyase | phrog_27797 | pectate lyase | moron, auxiliary metabolic gene and host takeover | 1 | 18139 | 20172 |
| YP_008242161.1 | NC_021804_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4058 | 4354 |
| YP_008242176.1 | NC_021804_p24 | structural protein | singleton | unknown function | unknown function | 1 | 16302 | 16625 |
| YP_008242195.1 | NC_021804_p43 | HNH endonuclease domain protein | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 26929 | 27246 |
| YP_008242155.1 | NC_021804_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 717 | 887 |
| YP_008242183.1 | NC_021804_p31 | alpha-amylase | singleton | unknown function | unknown function | 1 | 21494 | 21793 |
| YP_008242179.1 | NC_021804_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20181 | 20573 |
| YP_008242192.1 | NC_021804_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24564 | 24761 |
| YP_008242163.1 | NC_021804_p11 | prohead protease | phrog_80 | head maturation protease | head and packaging | 1 | 5626 | 6228 |
| YP_008242168.1 | NC_021804_p16 | structural protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 9016 | 9474 |
| YP_008242182.1 | NC_021804_p30 | hypothetical protein | phrog_1501 | unknown function | unknown function | 1 | 21066 | 21497 |
| YP_008242170.1 | NC_021804_p18 | structural protein | phrog_1407 | major tail protein | tail | 1 | 9851 | 10303 |
| YP_008242164.1 | NC_021804_p12 | phage capsid protein | phrog_10 | major head protein | head and packaging | 1 | 6228 | 7547 |
| YP_008242189.1 | NC_021804_p37 | hypothetical protein | phrog_12688 | unknown function | unknown function | 1 | 23149 | 23580 |
| YP_008242167.1 | NC_021804_p15 | structural protein | singleton | unknown function | unknown function | 1 | 8676 | 9026 |