| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021852 |
Definition |
Lactococcus phage P680, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
REFSEQ |
Length |
29631 |
Host Name |
Lactococcus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
35.11 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008318059.1 | NC_021852_p16 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 13147 | 14043 |
| YP_008318060.1 | NC_021852_p17 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 14043 | 15170 |
| YP_008318048.1 | NC_021852_p5 | head protease | phrog_80 | head maturation protease | head and packaging | 1 | 3789 | 4325 |
| YP_008318067.1 | NC_021852_p24 | hypothetical protein | phrog_5152 | unknown function | unknown function | -1 | 18325 | 18573 |
| YP_008318076.1 | NC_021852_p33 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 21130 | 21249 |
| YP_008318062.1 | NC_021852_p19 | receptor binding protein | phrog_6779 | tail protein | tail | 1 | 15443 | 16246 |
| YP_008318080.1 | NC_021852_p37 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23252 | 23464 |
| YP_008318064.1 | NC_021852_p21 | endolysin | phrog_670 | endolysin | lysis | 1 | 16618 | 17319 |
| YP_008318058.1 | NC_021852_p15 | tail tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 10397 | 13147 |
| YP_008318077.1 | NC_021852_p34 | hypothetical protein | phrog_56 | DNA methyltransferase | other | -1 | 21307 | 22170 |
| YP_008318078.1 | NC_021852_p35 | hypothetical protein | phrog_10825 | unknown function | unknown function | -1 | 22411 | 22656 |
| YP_008318053.1 | NC_021852_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6416 | 6781 |
| YP_008318069.1 | NC_021852_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19036 | 19383 |
| YP_008318092.1 | NC_021852_p49 | hypothetical protein | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28521 | 29003 |
| YP_008318090.1 | NC_021852_p47 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 28260 | 28388 |
| YP_008318055.1 | NC_021852_p12 | hypothetical protein | phrog_1433 | major tail protein | tail | 1 | 8855 | 9553 |
| YP_008318088.1 | NC_021852_p45 | hypothetical protein | phrog_5487 | unknown function | unknown function | -1 | 27023 | 27193 |
| YP_008318073.1 | NC_021852_p30 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 20282 | 20470 |
| YP_008318072.1 | NC_021852_p29 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19961 | 20218 |
| YP_008318044.1 | NC_021852_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 238 | 762 |
| YP_008318081.1 | NC_021852_p38 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23477 | 23836 |
| YP_008318079.1 | NC_021852_p36 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 22743 | 23255 |
| YP_008318050.1 | NC_021852_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5520 | 5783 |
| YP_008318084.1 | NC_021852_p41 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 24901 | 25281 |
| YP_008318075.1 | NC_021852_p32 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20822 | 21130 |
| YP_008318083.1 | NC_021852_p40 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 24394 | 24801 |
| YP_008318054.1 | NC_021852_p11 | hypothetical protein | phrog_2370 | neck passage structure | connector | 1 | 6838 | 8832 |
| YP_008318061.1 | NC_021852_p18 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 15160 | 15453 |
| YP_008318068.1 | NC_021852_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18594 | 18863 |
| YP_008318052.1 | NC_021852_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6087 | 6425 |
| YP_008318065.1 | NC_021852_p22 | hypothetical protein | phrog_3874 | transglycosylase | other | -1 | 17427 | 17963 |
| YP_008318091.1 | NC_021852_p48 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 28393 | 28524 |
| YP_008318057.1 | NC_021852_p14 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 9885 | 10397 |
| YP_008318049.1 | NC_021852_p6 | hypothetical protein | phrog_1393 | minor head protein | head and packaging | 1 | 4318 | 5499 |
| YP_008318046.1 | NC_021852_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2375 | 2659 |
| YP_008318071.1 | NC_021852_p28 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 19728 | 19931 |
| YP_008318087.1 | NC_021852_p44 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26481 | 26831 |
| YP_008318066.1 | NC_021852_p23 | hypothetical protein | phrog_5087 | unknown function | unknown function | -1 | 18053 | 18310 |
| YP_008318047.1 | NC_021852_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2690 | 3808 |
| YP_008318086.1 | NC_021852_p43 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 25588 | 26484 |
| YP_008318070.1 | NC_021852_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19383 | 19616 |
| YP_008318063.1 | NC_021852_p20 | holin | phrog_1379 | unknown function | unknown function | 1 | 16268 | 16621 |
| YP_008318074.1 | NC_021852_p31 | hypothetical protein | phrog_6037 | unknown function | unknown function | -1 | 20546 | 20806 |
| YP_008318056.1 | NC_021852_p13 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 9590 | 9865 |
| YP_008318045.1 | NC_021852_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 763 | 2385 |
| YP_008318089.1 | NC_021852_p46 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 27941 | 28129 |
| YP_008318082.1 | NC_021852_p39 | hypothetical protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 23841 | 24407 |
| YP_008318051.1 | NC_021852_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5783 | 6097 |
| YP_008318085.1 | NC_021852_p42 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25332 | 25595 |