Genomic map of Lactococcus phage P680 (NC_021852)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021852
Definition
Lactococcus phage P680, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
REFSEQ
Length
29631
Host Name
Lactococcus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
35.11
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008318059.1 NC_021852_p16 hypothetical protein phrog_1424 tail protein tail 1 13147 14043
YP_008318060.1 NC_021852_p17 hypothetical protein phrog_1432 tail associated lysin tail 1 14043 15170
YP_008318048.1 NC_021852_p5 head protease phrog_80 head maturation protease head and packaging 1 3789 4325
YP_008318067.1 NC_021852_p24 hypothetical protein phrog_5152 unknown function unknown function -1 18325 18573
YP_008318076.1 NC_021852_p33 hypothetical protein phrog_1508 unknown function unknown function -1 21130 21249
YP_008318062.1 NC_021852_p19 receptor binding protein phrog_6779 tail protein tail 1 15443 16246
YP_008318080.1 NC_021852_p37 hypothetical protein phrog_1295 unknown function unknown function -1 23252 23464
YP_008318064.1 NC_021852_p21 endolysin phrog_670 endolysin lysis 1 16618 17319
YP_008318058.1 NC_021852_p15 tail tape measure protein phrog_58 tail length tape measure protein tail 1 10397 13147
YP_008318077.1 NC_021852_p34 hypothetical protein phrog_56 DNA methyltransferase other -1 21307 22170
YP_008318078.1 NC_021852_p35 hypothetical protein phrog_10825 unknown function unknown function -1 22411 22656
YP_008318053.1 NC_021852_p10 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6416 6781
YP_008318069.1 NC_021852_p26 hypothetical protein phrog_1415 unknown function unknown function -1 19036 19383
YP_008318092.1 NC_021852_p49 hypothetical protein phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 28521 29003
YP_008318090.1 NC_021852_p47 hypothetical protein phrog_1952 unknown function unknown function 1 28260 28388
YP_008318055.1 NC_021852_p12 hypothetical protein phrog_1433 major tail protein tail 1 8855 9553
YP_008318088.1 NC_021852_p45 hypothetical protein phrog_5487 unknown function unknown function -1 27023 27193
YP_008318073.1 NC_021852_p30 hypothetical protein phrog_3365 unknown function unknown function -1 20282 20470
YP_008318072.1 NC_021852_p29 hypothetical protein phrog_1509 unknown function unknown function -1 19961 20218
YP_008318044.1 NC_021852_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 238 762
YP_008318081.1 NC_021852_p38 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 23477 23836
YP_008318079.1 NC_021852_p36 hypothetical protein phrog_1317 unknown function unknown function -1 22743 23255
YP_008318050.1 NC_021852_p7 hypothetical protein phrog_1428 head-tail connector protein connector 1 5520 5783
YP_008318084.1 NC_021852_p41 hypothetical protein phrog_2228 unknown function unknown function -1 24901 25281
YP_008318075.1 NC_021852_p32 hypothetical protein phrog_1225 unknown function unknown function -1 20822 21130
YP_008318083.1 NC_021852_p40 hypothetical protein phrog_1449 unknown function unknown function -1 24394 24801
YP_008318054.1 NC_021852_p11 hypothetical protein phrog_2370 neck passage structure connector 1 6838 8832
YP_008318061.1 NC_021852_p18 hypothetical protein phrog_1434 unknown function unknown function 1 15160 15453
YP_008318068.1 NC_021852_p25 hypothetical protein phrog_1430 unknown function unknown function -1 18594 18863
YP_008318052.1 NC_021852_p9 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6087 6425
YP_008318065.1 NC_021852_p22 hypothetical protein phrog_3874 transglycosylase other -1 17427 17963
YP_008318091.1 NC_021852_p48 hypothetical protein phrog_1436 unknown function unknown function 1 28393 28524
YP_008318057.1 NC_021852_p14 hypothetical protein phrog_1421 virion structural protein head and packaging 1 9885 10397
YP_008318049.1 NC_021852_p6 hypothetical protein phrog_1393 minor head protein head and packaging 1 4318 5499
YP_008318046.1 NC_021852_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2375 2659
YP_008318071.1 NC_021852_p28 hypothetical protein phrog_2530 unknown function unknown function -1 19728 19931
YP_008318087.1 NC_021852_p44 HNH endonuclease phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism -1 26481 26831
YP_008318066.1 NC_021852_p23 hypothetical protein phrog_5087 unknown function unknown function -1 18053 18310
YP_008318047.1 NC_021852_p4 portal protein phrog_12 portal protein head and packaging 1 2690 3808
YP_008318086.1 NC_021852_p43 DNA polymerase subunit phrog_1284 unknown function unknown function -1 25588 26484
YP_008318070.1 NC_021852_p27 hypothetical protein phrog_1441 unknown function unknown function -1 19383 19616
YP_008318063.1 NC_021852_p20 holin phrog_1379 unknown function unknown function 1 16268 16621
YP_008318074.1 NC_021852_p31 hypothetical protein phrog_6037 unknown function unknown function -1 20546 20806
YP_008318056.1 NC_021852_p13 hypothetical protein phrog_1420 virion structural protein head and packaging 1 9590 9865
YP_008318045.1 NC_021852_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 763 2385
YP_008318089.1 NC_021852_p46 hypothetical protein phrog_1656 unknown function unknown function -1 27941 28129
YP_008318082.1 NC_021852_p39 hypothetical protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 23841 24407
YP_008318051.1 NC_021852_p8 hypothetical protein phrog_1429 virion structural protein head and packaging 1 5783 6097
YP_008318085.1 NC_021852_p42 hypothetical protein phrog_1405 unknown function unknown function -1 25332 25595