| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021853 |
Definition |
Lactococcus phage 340, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
REFSEQ |
Length |
32337 |
Host Name |
Lactococcus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
34.48 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008318126.1 | NC_021853_p34 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 21812 | 21931 |
| YP_008318101.1 | NC_021853_p9 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5795 | 6109 |
| YP_008318146.1 | NC_021853_p54 | hypothetical protein | phrog_5027 | unknown function | unknown function | 1 | 30469 | 30696 |
| YP_008318140.1 | NC_021853_p48 | DNA polymerase | phrog_1284 | unknown function | unknown function | -1 | 27182 | 27982 |
| YP_008318105.1 | NC_021853_p13 | hypothetical protein | phrog_1433 | major tail protein | tail | 1 | 9584 | 10489 |
| YP_008318129.1 | NC_021853_p37 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22503 | 22760 |
| YP_008318123.1 | NC_021853_p31 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 20920 | 21177 |
| YP_008318124.1 | NC_021853_p32 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 21240 | 21428 |
| YP_008318127.1 | NC_021853_p35 | hypothetical protein | phrog_3002 | unknown function | unknown function | -1 | 21928 | 22113 |
| YP_008318137.1 | NC_021853_p45 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25460 | 25867 |
| YP_008318149.1 | NC_021853_p57 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 31309 | 31476 |
| YP_008318115.1 | NC_021853_p23 | hypothetical protein | phrog_3874 | transglycosylase | other | -1 | 18360 | 18896 |
| YP_008318110.1 | NC_021853_p18 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 14979 | 16106 |
| YP_008318130.1 | NC_021853_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22757 | 22879 |
| YP_008318136.1 | NC_021853_p44 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 24961 | 25473 |
| YP_008318141.1 | NC_021853_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28289 | 28423 |
| YP_008318142.1 | NC_021853_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28474 | 28923 |
| YP_008318112.1 | NC_021853_p20 | receptor binding protein | phrog_6465 | tail protein | tail | 1 | 16379 | 17188 |
| YP_008318103.1 | NC_021853_p11 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6428 | 6793 |
| YP_008318113.1 | NC_021853_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17202 | 17555 |
| YP_008318135.1 | NC_021853_p43 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24408 | 24974 |
| YP_008318145.1 | NC_021853_p53 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 30250 | 30438 |
| YP_008318107.1 | NC_021853_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10821 | 11333 |
| YP_008318098.1 | NC_021853_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4331 | 4558 |
| YP_008318132.1 | NC_021853_p40 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23311 | 23820 |
| YP_008318099.1 | NC_021853_p7 | hypothetical protein | phrog_1393 | minor head protein | head and packaging | 1 | 4555 | 5511 |
| YP_008318119.1 | NC_021853_p27 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19983 | 20330 |
| YP_008318128.1 | NC_021853_p36 | hypothetical protein | phrog_1083 | unknown function | unknown function | -1 | 22124 | 22447 |
| YP_008318093.1 | NC_021853_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 251 | 775 |
| YP_008318144.1 | NC_021853_p52 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 29766 | 29894 |
| YP_008318102.1 | NC_021853_p10 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6099 | 6437 |
| YP_008318100.1 | NC_021853_p8 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5532 | 5795 |
| YP_008318139.1 | NC_021853_p47 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 26417 | 26659 |
| YP_008318095.1 | NC_021853_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2388 | 2672 |
| YP_008318143.1 | NC_021853_p51 | hypothetical protein | phrog_5487 | unknown function | unknown function | -1 | 29090 | 29254 |
| YP_008318122.1 | NC_021853_p30 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 20687 | 20878 |
| YP_008318131.1 | NC_021853_p39 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22914 | 23228 |
| YP_008318111.1 | NC_021853_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16096 | 16389 |
| YP_008318104.1 | NC_021853_p12 | hypothetical protein | phrog_16048 | virion structural protein | head and packaging | 1 | 6850 | 9492 |
| YP_008318121.1 | NC_021853_p29 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 20497 | 20685 |
| YP_008318120.1 | NC_021853_p28 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 20330 | 20554 |
| YP_008318133.1 | NC_021853_p41 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23817 | 24032 |
| YP_008318117.1 | NC_021853_p25 | hypothetical protein | phrog_5152 | unknown function | unknown function | -1 | 19272 | 19520 |
| YP_008318125.1 | NC_021853_p33 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 21504 | 21866 |
| YP_008318106.1 | NC_021853_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10526 | 10801 |
| YP_008318109.1 | NC_021853_p17 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 14083 | 14979 |
| YP_008318097.1 | NC_021853_p5 | head protease | phrog_80 | head maturation protease | head and packaging | 1 | 3802 | 4338 |
| YP_008318147.1 | NC_021853_p55 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 30701 | 30832 |
| YP_008318096.1 | NC_021853_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2703 | 3821 |
| YP_008318094.1 | NC_021853_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 776 | 2398 |
| YP_008318138.1 | NC_021853_p46 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 25967 | 26173 |
| YP_008318118.1 | NC_021853_p26 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 19541 | 19810 |
| YP_008318114.1 | NC_021853_p22 | endolysin | phrog_670 | endolysin | lysis | 1 | 17552 | 18253 |
| YP_008318148.1 | NC_021853_p56 | holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30829 | 31308 |
| YP_008318108.1 | NC_021853_p16 | tail tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11333 | 14083 |
| YP_008318134.1 | NC_021853_p42 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24045 | 24311 |
| YP_008318150.1 | NC_021853_p58 | hypothetical protein | phrog_6252 | unknown function | unknown function | 1 | 32118 | 32249 |
| YP_008318116.1 | NC_021853_p24 | hypothetical protein | phrog_5087 | unknown function | unknown function | -1 | 18986 | 19327 |