Genomic map of Lactococcus phage 340 (NC_021853)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021853
Definition
Lactococcus phage 340, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
REFSEQ
Length
32337
Host Name
Lactococcus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
58
%GC
34.48
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008318126.1 NC_021853_p34 hypothetical protein phrog_1508 unknown function unknown function -1 21812 21931
YP_008318101.1 NC_021853_p9 hypothetical protein phrog_1429 virion structural protein head and packaging 1 5795 6109
YP_008318146.1 NC_021853_p54 hypothetical protein phrog_5027 unknown function unknown function 1 30469 30696
YP_008318140.1 NC_021853_p48 DNA polymerase phrog_1284 unknown function unknown function -1 27182 27982
YP_008318105.1 NC_021853_p13 hypothetical protein phrog_1433 major tail protein tail 1 9584 10489
YP_008318129.1 NC_021853_p37 hypothetical protein phrog_1825 DNA methyltransferase other -1 22503 22760
YP_008318123.1 NC_021853_p31 hypothetical protein phrog_1509 unknown function unknown function -1 20920 21177
YP_008318124.1 NC_021853_p32 hypothetical protein phrog_3365 unknown function unknown function -1 21240 21428
YP_008318127.1 NC_021853_p35 hypothetical protein phrog_3002 unknown function unknown function -1 21928 22113
YP_008318137.1 NC_021853_p45 hypothetical protein phrog_1449 unknown function unknown function -1 25460 25867
YP_008318149.1 NC_021853_p57 hypothetical protein phrog_1652 unknown function unknown function 1 31309 31476
YP_008318115.1 NC_021853_p23 hypothetical protein phrog_3874 transglycosylase other -1 18360 18896
YP_008318110.1 NC_021853_p18 hypothetical protein phrog_1432 tail associated lysin tail 1 14979 16106
YP_008318130.1 NC_021853_p38 hypothetical protein singleton unknown function unknown function -1 22757 22879
YP_008318136.1 NC_021853_p44 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 24961 25473
YP_008318141.1 NC_021853_p49 hypothetical protein singleton unknown function unknown function -1 28289 28423
YP_008318142.1 NC_021853_p50 hypothetical protein singleton unknown function unknown function -1 28474 28923
YP_008318112.1 NC_021853_p20 receptor binding protein phrog_6465 tail protein tail 1 16379 17188
YP_008318103.1 NC_021853_p11 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6428 6793
YP_008318113.1 NC_021853_p21 holin phrog_1379 unknown function unknown function 1 17202 17555
YP_008318135.1 NC_021853_p43 sak protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 24408 24974
YP_008318145.1 NC_021853_p53 hypothetical protein phrog_1656 unknown function unknown function -1 30250 30438
YP_008318107.1 NC_021853_p15 hypothetical protein phrog_1421 virion structural protein head and packaging 1 10821 11333
YP_008318098.1 NC_021853_p6 hypothetical protein singleton unknown function unknown function 1 4331 4558
YP_008318132.1 NC_021853_p40 hypothetical protein phrog_1317 unknown function unknown function -1 23311 23820
YP_008318099.1 NC_021853_p7 hypothetical protein phrog_1393 minor head protein head and packaging 1 4555 5511
YP_008318119.1 NC_021853_p27 hypothetical protein phrog_1415 unknown function unknown function -1 19983 20330
YP_008318128.1 NC_021853_p36 hypothetical protein phrog_1083 unknown function unknown function -1 22124 22447
YP_008318093.1 NC_021853_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 251 775
YP_008318144.1 NC_021853_p52 hypothetical protein phrog_2413 unknown function unknown function -1 29766 29894
YP_008318102.1 NC_021853_p10 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6099 6437
YP_008318100.1 NC_021853_p8 hypothetical protein phrog_1428 head-tail connector protein connector 1 5532 5795
YP_008318139.1 NC_021853_p47 hypothetical protein phrog_1405 unknown function unknown function -1 26417 26659
YP_008318095.1 NC_021853_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2388 2672
YP_008318143.1 NC_021853_p51 hypothetical protein phrog_5487 unknown function unknown function -1 29090 29254
YP_008318122.1 NC_021853_p30 hypothetical protein phrog_2530 unknown function unknown function -1 20687 20878
YP_008318131.1 NC_021853_p39 hypothetical protein phrog_1919 unknown function unknown function -1 22914 23228
YP_008318111.1 NC_021853_p19 hypothetical protein phrog_1434 unknown function unknown function 1 16096 16389
YP_008318104.1 NC_021853_p12 hypothetical protein phrog_16048 virion structural protein head and packaging 1 6850 9492
YP_008318121.1 NC_021853_p29 hypothetical protein phrog_1820 unknown function unknown function -1 20497 20685
YP_008318120.1 NC_021853_p28 hypothetical protein phrog_1441 unknown function unknown function -1 20330 20554
YP_008318133.1 NC_021853_p41 hypothetical protein phrog_1295 unknown function unknown function -1 23817 24032
YP_008318117.1 NC_021853_p25 hypothetical protein phrog_5152 unknown function unknown function -1 19272 19520
YP_008318125.1 NC_021853_p33 hypothetical protein phrog_1225 unknown function unknown function -1 21504 21866
YP_008318106.1 NC_021853_p14 hypothetical protein phrog_1420 virion structural protein head and packaging 1 10526 10801
YP_008318109.1 NC_021853_p17 hypothetical protein phrog_1424 tail protein tail 1 14083 14979
YP_008318097.1 NC_021853_p5 head protease phrog_80 head maturation protease head and packaging 1 3802 4338
YP_008318147.1 NC_021853_p55 hypothetical protein phrog_1436 unknown function unknown function 1 30701 30832
YP_008318096.1 NC_021853_p4 portal protein phrog_12 portal protein head and packaging 1 2703 3821
YP_008318094.1 NC_021853_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 776 2398
YP_008318138.1 NC_021853_p46 hypothetical protein phrog_2228 unknown function unknown function -1 25967 26173
YP_008318118.1 NC_021853_p26 hypothetical protein phrog_1430 unknown function unknown function -1 19541 19810
YP_008318114.1 NC_021853_p22 endolysin phrog_670 endolysin lysis 1 17552 18253
YP_008318148.1 NC_021853_p56 holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 30829 31308
YP_008318108.1 NC_021853_p16 tail tape measure protein phrog_58 tail length tape measure protein tail 1 11333 14083
YP_008318134.1 NC_021853_p42 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 24045 24311
YP_008318150.1 NC_021853_p58 hypothetical protein phrog_6252 unknown function unknown function 1 32118 32249
YP_008318116.1 NC_021853_p24 hypothetical protein phrog_5087 unknown function unknown function -1 18986 19327