| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021854 |
Definition |
Lactococcus phage jm3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
REFSEQ |
Length |
28674 |
Host Name |
Lactococcus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
34.42 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008318170.1 | NC_021854_p20 | hypothetical protein | phrog_1379 | unknown function | unknown function | 1 | 14931 | 15284 |
| YP_008318183.1 | NC_021854_p33 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 20001 | 20318 |
| YP_008318153.1 | NC_021854_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2368 | 2652 |
| YP_008318151.1 | NC_021854_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 231 | 755 |
| YP_008318173.1 | NC_021854_p23 | hypothetical protein | phrog_3874 | transglycosylase | other | -1 | 16632 | 17216 |
| YP_008318200.1 | NC_021854_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27766 | 27864 |
| YP_008318194.1 | NC_021854_p44 | hypothetical protein | phrog_7915 | unknown function | unknown function | -1 | 24931 | 25611 |
| YP_008318178.1 | NC_021854_p28 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 18693 | 18941 |
| YP_008318195.1 | NC_021854_p45 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 26059 | 26247 |
| YP_008318172.1 | NC_021854_p22 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 16184 | 16603 |
| YP_008318202.1 | NC_021854_p52 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 28237 | 28620 |
| YP_008318156.1 | NC_021854_p6 | hypothetical protein | phrog_1393 | minor head protein | head and packaging | 1 | 4311 | 5492 |
| YP_008318171.1 | NC_021854_p21 | hypothetical protein | phrog_670 | endolysin | lysis | 1 | 15281 | 16057 |
| YP_008318162.1 | NC_021854_p12 | hypothetical protein | phrog_1433 | major tail protein | tail | 1 | 7359 | 8201 |
| YP_008318176.1 | NC_021854_p26 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 18321 | 18512 |
| YP_008318174.1 | NC_021854_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 17278 | 17547 |
| YP_008318198.1 | NC_021854_p48 | hypothetical protein | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 26638 | 27120 |
| YP_008318184.1 | NC_021854_p34 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 20402 | 20920 |
| YP_008318196.1 | NC_021854_p46 | hypothetical protein | phrog_5027 | unknown function | unknown function | 1 | 26278 | 26505 |
| YP_008318181.1 | NC_021854_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19507 | 19614 |
| YP_008318191.1 | NC_021854_p41 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 23227 | 23496 |
| YP_008318161.1 | NC_021854_p11 | hypothetical protein | phrog_16048 | virion structural protein | head and packaging | 1 | 6831 | 7271 |
| YP_008318175.1 | NC_021854_p25 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 17720 | 18067 |
| YP_008318169.1 | NC_021854_p19 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 14109 | 14909 |
| YP_008318197.1 | NC_021854_p47 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 26510 | 26641 |
| YP_008318190.1 | NC_021854_p40 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 22800 | 23183 |
| YP_008318182.1 | NC_021854_p32 | hypothetical protein | phrog_4546 | unknown function | unknown function | -1 | 19856 | 19966 |
| YP_008318154.1 | NC_021854_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2683 | 3801 |
| YP_008318160.1 | NC_021854_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6409 | 6774 |
| YP_008318193.1 | NC_021854_p43 | hypothetical protein | phrog_7549 | unknown function | unknown function | -1 | 24691 | 24909 |
| YP_008318180.1 | NC_021854_p30 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 19330 | 19449 |
| YP_008318165.1 | NC_021854_p15 | tail tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9063 | 11813 |
| YP_008318192.1 | NC_021854_p42 | DNA polymerase | phrog_1284 | unknown function | unknown function | -1 | 23643 | 24590 |
| YP_008318166.1 | NC_021854_p16 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 11813 | 12709 |
| YP_008318186.1 | NC_021854_p36 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 21145 | 21504 |
| YP_008318188.1 | NC_021854_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22163 | 22306 |
| YP_008318167.1 | NC_021854_p17 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 12709 | 13836 |
| YP_008318185.1 | NC_021854_p35 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 20917 | 21132 |
| YP_008318201.1 | NC_021854_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27854 | 28072 |
| YP_008318157.1 | NC_021854_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5513 | 5776 |
| YP_008318179.1 | NC_021854_p29 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 19022 | 19330 |
| YP_008318187.1 | NC_021854_p37 | hypothetical protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 21509 | 22156 |
| YP_008318168.1 | NC_021854_p18 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 13826 | 14119 |
| YP_008318152.1 | NC_021854_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 756 | 2378 |
| YP_008318164.1 | NC_021854_p14 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 8551 | 9063 |
| YP_008318189.1 | NC_021854_p39 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 22293 | 22700 |
| YP_008318159.1 | NC_021854_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6080 | 6418 |
| YP_008318158.1 | NC_021854_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5776 | 6090 |
| YP_008318177.1 | NC_021854_p27 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 18512 | 18700 |
| YP_008318163.1 | NC_021854_p13 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 8256 | 8531 |
| YP_008318155.1 | NC_021854_p5 | head protease | phrog_80 | head maturation protease | head and packaging | 1 | 3782 | 4318 |
| YP_008318199.1 | NC_021854_p49 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 27117 | 27284 |