Genomic map of Lactococcus phage jm3 (NC_021854)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021854
Definition
Lactococcus phage jm3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
REFSEQ
Length
28674
Host Name
Lactococcus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
34.42
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008318170.1 NC_021854_p20 hypothetical protein phrog_1379 unknown function unknown function 1 14931 15284
YP_008318183.1 NC_021854_p33 hypothetical protein phrog_1919 unknown function unknown function -1 20001 20318
YP_008318153.1 NC_021854_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2368 2652
YP_008318151.1 NC_021854_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 231 755
YP_008318173.1 NC_021854_p23 hypothetical protein phrog_3874 transglycosylase other -1 16632 17216
YP_008318200.1 NC_021854_p50 hypothetical protein singleton unknown function unknown function 1 27766 27864
YP_008318194.1 NC_021854_p44 hypothetical protein phrog_7915 unknown function unknown function -1 24931 25611
YP_008318178.1 NC_021854_p28 hypothetical protein phrog_1509 unknown function unknown function -1 18693 18941
YP_008318195.1 NC_021854_p45 hypothetical protein phrog_1656 unknown function unknown function -1 26059 26247
YP_008318172.1 NC_021854_p22 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 16184 16603
YP_008318202.1 NC_021854_p52 HNH endonuclease phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 28237 28620
YP_008318156.1 NC_021854_p6 hypothetical protein phrog_1393 minor head protein head and packaging 1 4311 5492
YP_008318171.1 NC_021854_p21 hypothetical protein phrog_670 endolysin lysis 1 15281 16057
YP_008318162.1 NC_021854_p12 hypothetical protein phrog_1433 major tail protein tail 1 7359 8201
YP_008318176.1 NC_021854_p26 hypothetical protein phrog_1441 unknown function unknown function -1 18321 18512
YP_008318174.1 NC_021854_p24 hypothetical protein phrog_1430 unknown function unknown function -1 17278 17547
YP_008318198.1 NC_021854_p48 hypothetical protein phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 26638 27120
YP_008318184.1 NC_021854_p34 hypothetical protein phrog_1317 unknown function unknown function -1 20402 20920
YP_008318196.1 NC_021854_p46 hypothetical protein phrog_5027 unknown function unknown function 1 26278 26505
YP_008318181.1 NC_021854_p31 hypothetical protein singleton unknown function unknown function -1 19507 19614
YP_008318191.1 NC_021854_p41 hypothetical protein phrog_1405 unknown function unknown function -1 23227 23496
YP_008318161.1 NC_021854_p11 hypothetical protein phrog_16048 virion structural protein head and packaging 1 6831 7271
YP_008318175.1 NC_021854_p25 hypothetical protein phrog_1415 unknown function unknown function -1 17720 18067
YP_008318169.1 NC_021854_p19 receptor binding protein phrog_1630 receptor binding tail protein tail 1 14109 14909
YP_008318197.1 NC_021854_p47 hypothetical protein phrog_1436 unknown function unknown function 1 26510 26641
YP_008318190.1 NC_021854_p40 hypothetical protein phrog_2228 unknown function unknown function -1 22800 23183
YP_008318182.1 NC_021854_p32 hypothetical protein phrog_4546 unknown function unknown function -1 19856 19966
YP_008318154.1 NC_021854_p4 portal protein phrog_12 portal protein head and packaging 1 2683 3801
YP_008318160.1 NC_021854_p10 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6409 6774
YP_008318193.1 NC_021854_p43 hypothetical protein phrog_7549 unknown function unknown function -1 24691 24909
YP_008318180.1 NC_021854_p30 hypothetical protein phrog_1508 unknown function unknown function -1 19330 19449
YP_008318165.1 NC_021854_p15 tail tape measure protein phrog_58 tail length tape measure protein tail 1 9063 11813
YP_008318192.1 NC_021854_p42 DNA polymerase phrog_1284 unknown function unknown function -1 23643 24590
YP_008318166.1 NC_021854_p16 hypothetical protein phrog_1424 tail protein tail 1 11813 12709
YP_008318186.1 NC_021854_p36 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 21145 21504
YP_008318188.1 NC_021854_p38 hypothetical protein singleton unknown function unknown function -1 22163 22306
YP_008318167.1 NC_021854_p17 hypothetical protein phrog_1432 tail associated lysin tail 1 12709 13836
YP_008318185.1 NC_021854_p35 hypothetical protein phrog_1295 unknown function unknown function -1 20917 21132
YP_008318201.1 NC_021854_p51 hypothetical protein singleton unknown function unknown function 1 27854 28072
YP_008318157.1 NC_021854_p7 hypothetical protein phrog_1428 head-tail connector protein connector 1 5513 5776
YP_008318179.1 NC_021854_p29 hypothetical protein phrog_1225 unknown function unknown function -1 19022 19330
YP_008318187.1 NC_021854_p37 hypothetical protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 21509 22156
YP_008318168.1 NC_021854_p18 hypothetical protein phrog_1434 unknown function unknown function 1 13826 14119
YP_008318152.1 NC_021854_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 756 2378
YP_008318164.1 NC_021854_p14 hypothetical protein phrog_1421 virion structural protein head and packaging 1 8551 9063
YP_008318189.1 NC_021854_p39 hypothetical protein phrog_1449 unknown function unknown function -1 22293 22700
YP_008318159.1 NC_021854_p9 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6080 6418
YP_008318158.1 NC_021854_p8 hypothetical protein phrog_1429 virion structural protein head and packaging 1 5776 6090
YP_008318177.1 NC_021854_p27 hypothetical protein phrog_1820 unknown function unknown function -1 18512 18700
YP_008318163.1 NC_021854_p13 hypothetical protein phrog_1420 virion structural protein head and packaging 1 8256 8531
YP_008318155.1 NC_021854_p5 head protease phrog_80 head maturation protease head and packaging 1 3782 4318
YP_008318199.1 NC_021854_p49 hypothetical protein phrog_1652 unknown function unknown function 1 27117 27284