Genomic map of Shigella phage SfII (NC_021857)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021857
Definition
Shigella phage SfII, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
41475
Host Name
Shigella
Host domain
Bacteria
Is prophage?
undef
Number of proteins
58
%GC
49.17
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008318514.1 NC_021857_p36 hypothetical protein phrog_2605 unknown function unknown function 1 27994 28185
YP_008318493.1 NC_021857_p15 hypothetical protein phrog_166 tail protein tail 1 9669 9938
YP_008318506.1 NC_021857_p28 bactoprenol glucosyltransferase phrog_841 GtrB-like O-antigen conversion moron, auxiliary metabolic gene and host takeover -1 23345 24274
YP_008318531.1 NC_021857_p53 i-spanin phrog_214 Rz-like spanin lysis 1 38271 38663
YP_008318497.1 NC_021857_p19 tail protein phrog_11 baseplate spike tail 1 14380 14928
YP_008318533.1 NC_021857_p55 hypothetical protein phrog_157 transposase integration and excision -1 39323 39949
YP_008318523.1 NC_021857_p45 RusA family protein phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 33045 33434
YP_008318517.1 NC_021857_p39 transcriptional regulator phrog_101 CII-like transcriptional activator transcription regulation 1 29746 30297
YP_008318507.1 NC_021857_p29 flipase phrog_2224 GtrA-like O-antigen conversion moron, auxiliary metabolic gene and host takeover -1 24271 24633
YP_008318529.1 NC_021857_p51 class I holin phrog_126 holin/anti-holin lysis 1 37481 37807
YP_008318536.1 NC_021857_p58 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 41125 41475
YP_008318508.1 NC_021857_p30 integrase phrog_1 integrase integration and excision -1 24895 26058
YP_008318528.1 NC_021857_p50 hypothetical protein phrog_9879 unknown function unknown function -1 36173 37195
YP_008318494.1 NC_021857_p16 tail protein phrog_28 tail length tape measure protein tail 1 10080 11915
YP_008318520.1 NC_021857_p42 PerC transcriptional activator family protein phrog_1324 transcriptional activator transcription regulation 1 31586 32071
YP_008318495.1 NC_021857_p17 tail/DNA circulation protein phrog_184 baseplate hub tail 1 11934 13304
YP_008318518.1 NC_021857_p40 hypothetical protein phrog_1170 unknown function unknown function 1 30294 30632
YP_008318503.1 NC_021857_p25 acyltransferase singleton unknown function unknown function -1 18806 19855
YP_008318491.1 NC_021857_p13 tail sheath protein phrog_165 tail sheath tail 1 7817 9313
YP_008318496.1 NC_021857_p18 tail protein phrog_177 baseplate hub tail 1 13301 14380
YP_008318487.1 NC_021857_p9 head tail adaptor protein phrog_25 head closure Hc1 connector 1 6206 6616
YP_008318525.1 NC_021857_p47 hypothetical protein phrog_96 HNH endonuclease DNA, RNA and nucleotide metabolism 1 34259 35248
YP_008318490.1 NC_021857_p12 hypothetical protein phrog_208 unknown function unknown function 1 7663 7833
YP_008318492.1 NC_021857_p14 hypothetical protein phrog_185 tail tube protein tail 1 9313 9669
YP_008318535.1 NC_021857_p57 hypothetical protein phrog_7688 unknown function unknown function 1 40429 41049
YP_008318479.1 NC_021857_p1 small terminase subunit phrog_83 terminase small subunit head and packaging 1 126 620
YP_008318498.1 NC_021857_p20 tail protein phrog_180 baseplate wedge subunit tail 1 14925 15353
YP_008318511.1 NC_021857_p33 hypothetical protein phrog_583 unknown function unknown function -1 26590 26952
YP_008318481.1 NC_021857_p3 integral membrane protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover 1 2362 2544
YP_008318513.1 NC_021857_p35 hypothetical protein singleton unknown function unknown function -1 27535 27873
YP_008318524.1 NC_021857_p46 KliA-N domain protein phrog_129 transcriptional regulator transcription regulation 1 33454 34251
YP_008318510.1 NC_021857_p32 hypothetical protein phrog_660 unknown function unknown function -1 26285 26590
YP_008318482.1 NC_021857_p4 portal protein phrog_12 portal protein head and packaging 1 2544 3785
YP_008318532.1 NC_021857_p54 o-spanin phrog_456 Rz-like spanin lysis 1 38386 38820
YP_008318499.1 NC_021857_p21 base plate J protein phrog_6 baseplate wedge subunit tail 1 15340 16398
YP_008318522.1 NC_021857_p44 LexA DNA binding domain protein phrog_362 transcriptional repressor transcription regulation 1 32722 33048
YP_008318480.1 NC_021857_p2 large terminase subunit phrog_9 terminase large subunit head and packaging 1 617 2350
YP_008318519.1 NC_021857_p41 O protein family protein phrog_391 replication initiation O-like DNA, RNA and nucleotide metabolism 1 30642 31583
YP_008318512.1 NC_021857_p34 hypothetical protein phrog_318 deoxyribonucleoside 5' monophosphate phosphatase other -1 26943 27479
YP_008318485.1 NC_021857_p7 hypothetical protein phrog_1020 unknown function unknown function 1 5683 5883
YP_008318526.1 NC_021857_p48 antiterminator protein Q phrog_79 anti-termination protein Q-like transcription regulation 1 35266 35577
YP_008318500.1 NC_021857_p22 tail protein phrog_203 baseplate wedge subunit tail 1 16389 16973
YP_008318527.1 NC_021857_p49 hypothetical protein phrog_8257 unknown function unknown function -1 35581 36165
YP_008318484.1 NC_021857_p6 major capsid protein phrog_10 major head protein head and packaging 1 4428 5633
YP_008318505.1 NC_021857_p27 serotype-specific glucosyltransferase phrog_4829 GtrC-like O-antigen conversion translocase moron, auxiliary metabolic gene and host takeover -1 21888 23348
YP_008318501.1 NC_021857_p23 hypothetical protein phrog_1396 tail fiber protein tail 1 16977 17627
YP_008318516.1 NC_021857_p38 Cro repressor phrog_3 transcriptional repressor transcription regulation 1 29493 29753
YP_008318534.1 NC_021857_p56 hypothetical protein phrog_151 transposase integration and excision -1 39976 40278
YP_008318502.1 NC_021857_p24 tail fiber assembly protein phrog_188 tail fiber assembly protein tail 1 17599 18033
YP_008318488.1 NC_021857_p10 hypothetical protein phrog_879 tail completion or Neck1 protein connector 1 6591 7097
YP_008318486.1 NC_021857_p8 head-tail connector protein phrog_40 head-tail adaptor Ad1 connector 1 5886 6209
YP_008318530.1 NC_021857_p52 lysin phrog_90 endolysin lysis 1 37811 38287
YP_008318509.1 NC_021857_p31 excisionase phrog_2907 excisionase integration and excision -1 25935 26369
YP_008318515.1 NC_021857_p37 CI repressor phrog_4 transcriptional repressor transcription regulation -1 28703 29395
YP_008318489.1 NC_021857_p11 hypothetical protein phrog_209 portal protein head and packaging 1 7094 7654
YP_008318483.1 NC_021857_p5 prohead protease phrog_80 head maturation protease head and packaging 1 3763 4413
YP_008318504.1 NC_021857_p26 transposase singleton unknown function unknown function 1 20308 21498
YP_008318521.1 NC_021857_p43 DNA adenine methylase phrog_111 DNA methyltransferase other 1 32072 32725