| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021860 |
Definition |
Lactococcus phage jm2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
REFSEQ |
Length |
31090 |
Host Name |
Lactococcus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
34.31 |
Number of singletons |
3 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008320117.1 | NC_021860_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21945 | 22097 |
| YP_008320085.1 | NC_021860_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 768 | 2390 |
| YP_008320091.1 | NC_021860_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5788 | 6102 |
| YP_008320109.1 | NC_021860_p26 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19088 | 19264 |
| YP_008320104.1 | NC_021860_p21 | endolysin | phrog_670 | endolysin | lysis | 1 | 17056 | 17841 |
| YP_008320140.1 | NC_021860_p57 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 29515 | 29646 |
| YP_008320128.1 | NC_021860_p45 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 25443 | 25820 |
| YP_008320084.1 | NC_021860_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 243 | 767 |
| YP_008320094.1 | NC_021860_p11 | hypothetical protein | phrog_27126 | neck protein | connector | 1 | 6853 | 9039 |
| YP_008320112.1 | NC_021860_p29 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 19894 | 20013 |
| YP_008320131.1 | NC_021860_p48 | DNA polymerase | phrog_1284 | unknown function | unknown function | -1 | 26277 | 27173 |
| YP_008320105.1 | NC_021860_p22 | hypothetical protein | phrog_3775 | transglycosylase | other | -1 | 17882 | 18043 |
| YP_008320116.1 | NC_021860_p33 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 21674 | 21958 |
| YP_008320129.1 | NC_021860_p46 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25873 | 26139 |
| YP_008320133.1 | NC_021860_p50 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 27445 | 27630 |
| YP_008320098.1 | NC_021860_p15 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 10910 | 13594 |
| YP_008320135.1 | NC_021860_p52 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 28132 | 28251 |
| YP_008320100.1 | NC_021860_p17 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 14490 | 15617 |
| YP_008320086.1 | NC_021860_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2380 | 2664 |
| YP_008320113.1 | NC_021860_p30 | hypothetical protein | phrog_1083 | unknown function | unknown function | -1 | 20024 | 20380 |
| YP_008320132.1 | NC_021860_p49 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 27166 | 27387 |
| YP_008320137.1 | NC_021860_p54 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 28651 | 29067 |
| YP_008320138.1 | NC_021860_p55 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 29064 | 29252 |
| YP_008320115.1 | NC_021860_p32 | hypothetical protein | phrog_56 | DNA methyltransferase | other | -1 | 20685 | 21563 |
| YP_008320089.1 | NC_021860_p6 | hypothetical protein | phrog_1393 | minor head protein | head and packaging | 1 | 4323 | 5504 |
| YP_008320114.1 | NC_021860_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20418 | 20582 |
| YP_008320108.1 | NC_021860_p25 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 18891 | 19088 |
| YP_008320141.1 | NC_021860_p58 | holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 29643 | 30125 |
| YP_008320103.1 | NC_021860_p20 | holin | phrog_1379 | unknown function | unknown function | 1 | 16706 | 17059 |
| YP_008320106.1 | NC_021860_p23 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18105 | 18371 |
| YP_008320111.1 | NC_021860_p28 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 19585 | 19893 |
| YP_008320110.1 | NC_021860_p27 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19257 | 19511 |
| YP_008320093.1 | NC_021860_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6431 | 6796 |
| YP_008320118.1 | NC_021860_p35 | hypothetical protein | phrog_4546 | unknown function | unknown function | -1 | 22098 | 22208 |
| YP_008320097.1 | NC_021860_p14 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10398 | 10910 |
| YP_008320121.1 | NC_021860_p38 | hypothetical protein | phrog_35539 | unknown function | unknown function | -1 | 23053 | 23190 |
| YP_008320092.1 | NC_021860_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6099 | 6440 |
| YP_008320099.1 | NC_021860_p16 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 13594 | 14490 |
| YP_008320136.1 | NC_021860_p53 | hypothetical protein | phrog_6866 | unknown function | unknown function | 1 | 28389 | 28535 |
| YP_008320101.1 | NC_021860_p18 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 15607 | 15900 |
| YP_008320125.1 | NC_021860_p42 | hypothetical protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24378 | 24944 |
| YP_008320102.1 | NC_021860_p19 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 15890 | 16684 |
| YP_008320096.1 | NC_021860_p13 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10103 | 10378 |
| YP_008320095.1 | NC_021860_p12 | hypothetical protein | phrog_1433 | major tail protein | tail | 1 | 9160 | 10065 |
| YP_008320088.1 | NC_021860_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3794 | 4330 |
| YP_008320119.1 | NC_021860_p36 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22205 | 22546 |
| YP_008320090.1 | NC_021860_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5525 | 5788 |
| YP_008320120.1 | NC_021860_p37 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22543 | 22986 |
| YP_008320139.1 | NC_021860_p56 | hypothetical protein | phrog_5027 | unknown function | unknown function | 1 | 29283 | 29510 |
| YP_008320087.1 | NC_021860_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2677 | 3813 |
| YP_008320123.1 | NC_021860_p40 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23783 | 23998 |
| YP_008320142.1 | NC_021860_p59 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 30122 | 30289 |
| YP_008320122.1 | NC_021860_p39 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23274 | 23786 |
| YP_008320134.1 | NC_021860_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27889 | 27963 |
| YP_008320126.1 | NC_021860_p43 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 24931 | 25197 |
| YP_008320124.1 | NC_021860_p41 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24014 | 24373 |
| YP_008320130.1 | NC_021860_p47 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 26090 | 26284 |
| YP_008320127.1 | NC_021860_p44 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25154 | 25441 |
| YP_008320107.1 | NC_021860_p24 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18544 | 18891 |