Genomic map of Lactococcus phage jm2 (NC_021860)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021860
Definition
Lactococcus phage jm2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
REFSEQ
Length
31090
Host Name
Lactococcus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
59
%GC
34.31
Number of singletons
3
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008320117.1 NC_021860_p34 hypothetical protein singleton unknown function unknown function -1 21945 22097
YP_008320085.1 NC_021860_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 768 2390
YP_008320091.1 NC_021860_p8 hypothetical protein phrog_1429 virion structural protein head and packaging 1 5788 6102
YP_008320109.1 NC_021860_p26 hypothetical protein phrog_1820 unknown function unknown function -1 19088 19264
YP_008320104.1 NC_021860_p21 endolysin phrog_670 endolysin lysis 1 17056 17841
YP_008320140.1 NC_021860_p57 hypothetical protein phrog_1436 unknown function unknown function 1 29515 29646
YP_008320128.1 NC_021860_p45 hypothetical protein phrog_2228 unknown function unknown function -1 25443 25820
YP_008320084.1 NC_021860_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 243 767
YP_008320094.1 NC_021860_p11 hypothetical protein phrog_27126 neck protein connector 1 6853 9039
YP_008320112.1 NC_021860_p29 hypothetical protein phrog_1508 unknown function unknown function -1 19894 20013
YP_008320131.1 NC_021860_p48 DNA polymerase phrog_1284 unknown function unknown function -1 26277 27173
YP_008320105.1 NC_021860_p22 hypothetical protein phrog_3775 transglycosylase other -1 17882 18043
YP_008320116.1 NC_021860_p33 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 21674 21958
YP_008320129.1 NC_021860_p46 hypothetical protein phrog_1405 unknown function unknown function -1 25873 26139
YP_008320133.1 NC_021860_p50 hypothetical protein phrog_4505 unknown function unknown function -1 27445 27630
YP_008320098.1 NC_021860_p15 tape measure protein phrog_58 tail length tape measure protein tail 1 10910 13594
YP_008320135.1 NC_021860_p52 hypothetical protein phrog_2413 unknown function unknown function -1 28132 28251
YP_008320100.1 NC_021860_p17 hypothetical protein phrog_1432 tail associated lysin tail 1 14490 15617
YP_008320086.1 NC_021860_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2380 2664
YP_008320113.1 NC_021860_p30 hypothetical protein phrog_1083 unknown function unknown function -1 20024 20380
YP_008320132.1 NC_021860_p49 hypothetical protein phrog_2541 unknown function unknown function -1 27166 27387
YP_008320137.1 NC_021860_p54 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 28651 29067
YP_008320138.1 NC_021860_p55 hypothetical protein phrog_1656 unknown function unknown function -1 29064 29252
YP_008320115.1 NC_021860_p32 hypothetical protein phrog_56 DNA methyltransferase other -1 20685 21563
YP_008320089.1 NC_021860_p6 hypothetical protein phrog_1393 minor head protein head and packaging 1 4323 5504
YP_008320114.1 NC_021860_p31 hypothetical protein singleton unknown function unknown function -1 20418 20582
YP_008320108.1 NC_021860_p25 hypothetical protein phrog_1441 unknown function unknown function -1 18891 19088
YP_008320141.1 NC_021860_p58 holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 29643 30125
YP_008320103.1 NC_021860_p20 holin phrog_1379 unknown function unknown function 1 16706 17059
YP_008320106.1 NC_021860_p23 hypothetical protein phrog_1430 unknown function unknown function -1 18105 18371
YP_008320111.1 NC_021860_p28 hypothetical protein phrog_1225 unknown function unknown function -1 19585 19893
YP_008320110.1 NC_021860_p27 hypothetical protein phrog_1509 unknown function unknown function -1 19257 19511
YP_008320093.1 NC_021860_p10 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6431 6796
YP_008320118.1 NC_021860_p35 hypothetical protein phrog_4546 unknown function unknown function -1 22098 22208
YP_008320097.1 NC_021860_p14 hypothetical protein phrog_1421 virion structural protein head and packaging 1 10398 10910
YP_008320121.1 NC_021860_p38 hypothetical protein phrog_35539 unknown function unknown function -1 23053 23190
YP_008320092.1 NC_021860_p9 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6099 6440
YP_008320099.1 NC_021860_p16 hypothetical protein phrog_1424 tail protein tail 1 13594 14490
YP_008320136.1 NC_021860_p53 hypothetical protein phrog_6866 unknown function unknown function 1 28389 28535
YP_008320101.1 NC_021860_p18 hypothetical protein phrog_1434 unknown function unknown function 1 15607 15900
YP_008320125.1 NC_021860_p42 hypothetical protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 24378 24944
YP_008320102.1 NC_021860_p19 receptor binding protein phrog_1630 receptor binding tail protein tail 1 15890 16684
YP_008320096.1 NC_021860_p13 hypothetical protein phrog_1420 virion structural protein head and packaging 1 10103 10378
YP_008320095.1 NC_021860_p12 hypothetical protein phrog_1433 major tail protein tail 1 9160 10065
YP_008320088.1 NC_021860_p5 protease phrog_80 head maturation protease head and packaging 1 3794 4330
YP_008320119.1 NC_021860_p36 hypothetical protein phrog_1919 unknown function unknown function -1 22205 22546
YP_008320090.1 NC_021860_p7 hypothetical protein phrog_1428 head-tail connector protein connector 1 5525 5788
YP_008320120.1 NC_021860_p37 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 22543 22986
YP_008320139.1 NC_021860_p56 hypothetical protein phrog_5027 unknown function unknown function 1 29283 29510
YP_008320087.1 NC_021860_p4 portal protein phrog_12 portal protein head and packaging 1 2677 3813
YP_008320123.1 NC_021860_p40 hypothetical protein phrog_1295 unknown function unknown function -1 23783 23998
YP_008320142.1 NC_021860_p59 hypothetical protein phrog_1652 unknown function unknown function 1 30122 30289
YP_008320122.1 NC_021860_p39 hypothetical protein phrog_1317 unknown function unknown function -1 23274 23786
YP_008320134.1 NC_021860_p51 hypothetical protein singleton unknown function unknown function -1 27889 27963
YP_008320126.1 NC_021860_p43 hypothetical protein phrog_1449 unknown function unknown function -1 24931 25197
YP_008320124.1 NC_021860_p41 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 24014 24373
YP_008320130.1 NC_021860_p47 hypothetical protein phrog_3604 unknown function unknown function -1 26090 26284
YP_008320127.1 NC_021860_p44 hypothetical protein phrog_1632 unknown function unknown function -1 25154 25441
YP_008320107.1 NC_021860_p24 hypothetical protein phrog_1415 unknown function unknown function -1 18544 18891