| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021861 |
Definition |
Lactococcus phage BM13, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
30910 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
35.98 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008320151.1 | NC_021861_p9 | hypothetical protein | phrog_5450 | unknown function | unknown function | 1 | 3704 | 3940 |
| YP_008320159.1 | NC_021861_p17 | hypothetical protein | phrog_3109 | unknown function | unknown function | 1 | 7846 | 8085 |
| YP_008320190.1 | NC_021861_p48 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 23595 | 25796 |
| YP_008320158.1 | NC_021861_p16 | resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 7454 | 7843 |
| YP_008320184.1 | NC_021861_p42 | structural protein | phrog_1059 | head-tail adaptor | connector | 1 | 20931 | 21251 |
| YP_008320183.1 | NC_021861_p41 | structural protein | phrog_1236 | head protein | head and packaging | 1 | 20363 | 20929 |
| YP_008320178.1 | NC_021861_p36 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 17156 | 18205 |
| YP_008320164.1 | NC_021861_p22 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 9574 | 10122 |
| YP_008320148.1 | NC_021861_p6 | hypothetical protein | phrog_2899 | anti-repressor Ant | transcription regulation | 1 | 2382 | 2702 |
| YP_008320147.1 | NC_021861_p5 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 2127 | 2369 |
| YP_008320186.1 | NC_021861_p44 | structural protein | phrog_957 | head protein | head and packaging | 1 | 21675 | 22046 |
| YP_008320179.1 | NC_021861_p37 | hypothetical protein | phrog_35720 | unknown function | unknown function | 1 | 18183 | 18317 |
| YP_008320174.1 | NC_021861_p32 | transcriptional activator | phrog_2198 | Alt-like transcription activator | transcription regulation | 1 | 13527 | 13937 |
| YP_008320168.1 | NC_021861_p26 | hypothetical protein | phrog_4000 | unknown function | unknown function | 1 | 11340 | 11882 |
| YP_008320166.1 | NC_021861_p24 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 10691 | 11110 |
| YP_008320150.1 | NC_021861_p8 | hypothetical protein | phrog_9675 | unknown function | unknown function | 1 | 3465 | 3659 |
| YP_008320170.1 | NC_021861_p28 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 12598 | 12843 |
| YP_008320182.1 | NC_021861_p40 | major head protein | phrog_840 | major head protein | head and packaging | 1 | 19331 | 20227 |
| YP_008320169.1 | NC_021861_p27 | hypothetical protein | phrog_1071 | DNA methyltransferase | other | 1 | 11909 | 12601 |
| YP_008320144.1 | NC_021861_p2 | anti-repressor | phrog_373 | anti-repressor | transcription regulation | 1 | 378 | 1094 |
| YP_008320193.1 | NC_021861_p51 | base plate | phrog_1220 | head protein | head and packaging | 1 | 27785 | 28813 |
| YP_008320167.1 | NC_021861_p25 | hypothetical protein | phrog_21466 | unknown function | unknown function | 1 | 11183 | 11335 |
| YP_008320175.1 | NC_021861_p33 | hypothetical protein | phrog_2538 | terminase small subunit | head and packaging | 1 | 14089 | 14499 |
| YP_008320197.1 | NC_021861_p55 | hypothetical protein | phrog_11039 | unknown function | unknown function | 1 | 30705 | 30905 |
| YP_008320181.1 | NC_021861_p39 | hypothetical protein | phrog_13508 | unknown function | unknown function | 1 | 19073 | 19315 |
| YP_008320196.1 | NC_021861_p54 | endolysin | phrog_291 | endolysin | lysis | 1 | 29340 | 30629 |
| YP_008320157.1 | NC_021861_p15 | hypothetical protein | phrog_2108 | unknown function | unknown function | 1 | 7300 | 7464 |
| YP_008320180.1 | NC_021861_p38 | scaffold structural protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 18459 | 19061 |
| YP_008320152.1 | NC_021861_p10 | hypothetical protein | phrog_4729 | unknown function | unknown function | 1 | 4039 | 4434 |
| YP_008320188.1 | NC_021861_p46 | hypothetical protein | phrog_1021 | unknown function | unknown function | 1 | 22919 | 23266 |
| YP_008320191.1 | NC_021861_p49 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 25799 | 26671 |
| YP_008320195.1 | NC_021861_p53 | holin | phrog_881 | holin | lysis | 1 | 29119 | 29343 |
| YP_008320156.1 | NC_021861_p14 | helicase | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 6401 | 7291 |
| YP_008320146.1 | NC_021861_p4 | hypothetical protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 1314 | 1952 |
| YP_008320155.1 | NC_021861_p13 | DNA replication protein | phrog_1163 | unknown function | unknown function | 1 | 5672 | 6391 |
| YP_008320162.1 | NC_021861_p20 | hypothetical protein | phrog_4149 | unknown function | unknown function | 1 | 8726 | 9295 |
| YP_008320153.1 | NC_021861_p11 | single strand annealing protein | phrog_2324 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 4443 | 4958 |
| YP_008320189.1 | NC_021861_p47 | hypothetical protein | phrog_1294 | peptide methionine sulfoxide reductase | other | 1 | 23365 | 23595 |
| YP_008320149.1 | NC_021861_p7 | regulatory protein | phrog_373 | anti-repressor | transcription regulation | 1 | 2712 | 3452 |
| YP_008320171.1 | NC_021861_p29 | hypothetical protein | phrog_2670 | unknown function | unknown function | 1 | 12840 | 13040 |
| YP_008320176.1 | NC_021861_p34 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 14489 | 15730 |
| YP_008320160.1 | NC_021861_p18 | hypothetical protein | phrog_5080 | unknown function | unknown function | 1 | 8196 | 8402 |
| YP_008320185.1 | NC_021861_p43 | structural protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 21256 | 21675 |
| YP_008320165.1 | NC_021861_p23 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10122 | 10694 |
| YP_008320154.1 | NC_021861_p12 | single strand DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 4972 | 5523 |
| YP_008320163.1 | NC_021861_p21 | hypothetical protein | phrog_8486 | unknown function | unknown function | 1 | 9305 | 9577 |
| YP_008320187.1 | NC_021861_p45 | major tail protein | phrog_885 | major tail protein | tail | 1 | 22046 | 22894 |
| YP_008320161.1 | NC_021861_p19 | hypothetical protein | phrog_4314 | unknown function | unknown function | 1 | 8557 | 8736 |
| YP_008320172.1 | NC_021861_p30 | hypothetical protein | phrog_8817 | unknown function | unknown function | 1 | 13048 | 13233 |
| YP_008320177.1 | NC_021861_p35 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 15730 | 17151 |
| YP_008320192.1 | NC_021861_p50 | structural protein | phrog_538 | minor tail protein | tail | 1 | 26673 | 27788 |
| YP_008320145.1 | NC_021861_p3 | hypothetical protein | phrog_15116 | unknown function | unknown function | 1 | 1108 | 1302 |
| YP_008320143.1 | NC_021861_p1 | cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 127 | 351 |
| YP_008320173.1 | NC_021861_p31 | hypothetical protein | phrog_21465 | unknown function | unknown function | 1 | 13237 | 13449 |
| YP_008320194.1 | NC_021861_p52 | hypothetical protein | phrog_6453 | unknown function | unknown function | 1 | 28827 | 29129 |