| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_021863 |
Definition |
Staphylococcus phage SA13, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus. |
DB of origin |
REFSEQ |
Length |
42652 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
35.41 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008320211.1 | NC_021863_p11 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 6302 | 6646 |
| YP_008320245.1 | NC_021863_p45 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 23649 | 24086 |
| YP_008320202.1 | NC_021863_p2 | hypothetical protein | phrog_1412 | antitoxin mazE-like | moron, auxiliary metabolic gene and host takeover | -1 | 1593 | 2273 |
| YP_008320234.1 | NC_021863_p34 | transcriptional activator RinA | phrog_36 | transcriptional regulator | transcription regulation | 1 | 15916 | 16338 |
| YP_008320252.1 | NC_021863_p52 | hypothetical protein | phrog_287 | minor tail protein | tail | 1 | 31383 | 33281 |
| YP_008320221.1 | NC_021863_p21 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 11661 | 12065 |
| YP_008320257.1 | NC_021863_p57 | N-acetylmuramoyl-L-alanine amidase/tail tip protein | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 36136 | 38010 |
| YP_008320232.1 | NC_021863_p32 | transcriptional activator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 15206 | 15379 |
| YP_008320213.1 | NC_021863_p13 | single-stranded DNA-binding protein 1 | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7140 | 7778 |
| YP_008320258.1 | NC_021863_p58 | tail fiber | phrog_1125 | tail fiber protein | tail | 1 | 38023 | 39195 |
| YP_008320243.1 | NC_021863_p43 | phage head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 22901 | 23236 |
| YP_008320262.1 | NC_021863_p62 | hypothetical protein | phrog_1529 | unknown function | unknown function | 1 | 42079 | 42279 |
| YP_008320251.1 | NC_021863_p51 | minor structural protein | phrog_663 | minor head protein | head and packaging | 1 | 29484 | 31370 |
| YP_008320224.1 | NC_021863_p24 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 12619 | 12867 |
| YP_008320225.1 | NC_021863_p25 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 12880 | 13260 |
| YP_008320256.1 | NC_021863_p56 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 35700 | 35999 |
| YP_008320205.1 | NC_021863_p5 | Cro/CI family transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 3749 | 4081 |
| YP_008320218.1 | NC_021863_p18 | IstB-like ATP-binding protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10486 | 11265 |
| YP_008320254.1 | NC_021863_p54 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 35104 | 35511 |
| YP_008320237.1 | NC_021863_p37 | SPP1 family portal protein | phrog_64 | portal protein | head and packaging | 1 | 18375 | 19793 |
| YP_008320230.1 | NC_021863_p30 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 14716 | 14952 |
| YP_008320238.1 | NC_021863_p38 | SPP1 family phage head morphogenesis protein | phrog_115 | minor head protein | head and packaging | 1 | 19750 | 20712 |
| YP_008320260.1 | NC_021863_p60 | holin | phrog_962 | holin | lysis | 1 | 39653 | 40090 |
| YP_008320203.1 | NC_021863_p3 | hypothetical protein | phrog_888 | unknown function | unknown function | -1 | 2305 | 3030 |
| YP_008320227.1 | NC_021863_p27 | hypothetical protein | phrog_1034 | unknown function | unknown function | 1 | 13601 | 13909 |
| YP_008320233.1 | NC_021863_p33 | hypothetical protein | phrog_2409 | unknown function | unknown function | 1 | 15380 | 15745 |
| YP_008320255.1 | NC_021863_p55 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 35486 | 35659 |
| YP_008320246.1 | NC_021863_p46 | major tail protein | phrog_238 | major tail protein | tail | 1 | 24073 | 24633 |
| YP_008320223.1 | NC_021863_p23 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 12256 | 12618 |
| YP_008320206.1 | NC_021863_p6 | Cro protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 4344 | 4538 |
| YP_008320217.1 | NC_021863_p17 | phage replication protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 9706 | 10476 |
| YP_008320231.1 | NC_021863_p31 | hypothetical protein | phrog_555 | unknown function | unknown function | 1 | 14977 | 15213 |
| YP_008320239.1 | NC_021863_p39 | minor structural protein GP20 | phrog_194 | head scaffolding protein | head and packaging | 1 | 20810 | 21406 |
| YP_008320220.1 | NC_021863_p20 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 11430 | 11651 |
| YP_008320236.1 | NC_021863_p36 | PBSX family terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 17153 | 18361 |
| YP_008320216.1 | NC_021863_p16 | hypothetical protein | phrog_3634 | unknown function | unknown function | -1 | 9001 | 9651 |
| YP_008320241.1 | NC_021863_p41 | rho termination factor domain-containing protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 22268 | 22594 |
| YP_008320207.1 | NC_021863_p7 | anti-repressor KilAC domain protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 4538 | 5302 |
| YP_008320215.1 | NC_021863_p15 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 8217 | 8891 |
| YP_008320250.1 | NC_021863_p50 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 28538 | 29473 |
| YP_008320212.1 | NC_021863_p12 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 6661 | 7140 |
| YP_008320226.1 | NC_021863_p26 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 13257 | 13604 |
| YP_008320219.1 | NC_021863_p19 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | 1 | 11259 | 11417 |
| YP_008320244.1 | NC_021863_p44 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 23223 | 23636 |
| YP_008320210.1 | NC_021863_p10 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 6128 | 6289 |
| YP_008320248.1 | NC_021863_p48 | hypothetical protein | phrog_1404 | tail protein | tail | 1 | 25210 | 25551 |
| YP_008320214.1 | NC_021863_p14 | single-stranded DNA-binding protein 2 | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 7778 | 8203 |
| YP_008320261.1 | NC_021863_p61 | endolysin | phrog_635 | endolysin | lysis | 1 | 40071 | 41516 |
| YP_008320222.1 | NC_021863_p22 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 12070 | 12255 |
| YP_008320249.1 | NC_021863_p49 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 25554 | 28523 |
| YP_008320229.1 | NC_021863_p29 | dUTP diphosphatase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 14143 | 14679 |
| YP_008320204.1 | NC_021863_p4 | hypothetical protein | phrog_1914 | unknown function | unknown function | -1 | 3058 | 3732 |
| YP_008320209.1 | NC_021863_p9 | hypothetical protein | phrog_2222 | unknown function | unknown function | -1 | 5718 | 5948 |
| YP_008320228.1 | NC_021863_p28 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 13902 | 14150 |
| YP_008320259.1 | NC_021863_p59 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 39201 | 39596 |
| YP_008320253.1 | NC_021863_p53 | minor tail protein | phrog_257 | minor tail protein | tail | 1 | 33281 | 35104 |
| YP_008320240.1 | NC_021863_p40 | major capsid protein | phrog_544 | major head protein | head and packaging | 1 | 21427 | 22251 |
| YP_008320235.1 | NC_021863_p35 | terminase small subunit | phrog_1595 | terminase small subunit | head and packaging | 1 | 16666 | 17160 |
| YP_008320201.1 | NC_021863_p1 | phage recombinase/integrase | phrog_95 | integrase | integration and excision | -1 | 1 | 1386 |
| YP_008320242.1 | NC_021863_p42 | phage gp6-like head-tail connector protein | phrog_1161 | head-tail adaptor | connector | 1 | 22594 | 22908 |
| YP_008320247.1 | NC_021863_p47 | tail assembly protein | phrog_183 | tail chaperone protein | tail | 1 | 24695 | 25189 |
| YP_008320208.1 | NC_021863_p8 | hypothetical protein | phrog_2312 | unknown function | unknown function | 1 | 5567 | 5743 |