Genomic map of Staphylococcus phage SA13 (NC_021863)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_021863
Definition
Staphylococcus phage SA13, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus.
DB of origin
REFSEQ
Length
42652
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
35.41
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008320211.1 NC_021863_p11 hypothetical protein phrog_401 unknown function unknown function 1 6302 6646
YP_008320245.1 NC_021863_p45 hypothetical protein phrog_176 tail terminator connector 1 23649 24086
YP_008320202.1 NC_021863_p2 hypothetical protein phrog_1412 antitoxin mazE-like moron, auxiliary metabolic gene and host takeover -1 1593 2273
YP_008320234.1 NC_021863_p34 transcriptional activator RinA phrog_36 transcriptional regulator transcription regulation 1 15916 16338
YP_008320252.1 NC_021863_p52 hypothetical protein phrog_287 minor tail protein tail 1 31383 33281
YP_008320221.1 NC_021863_p21 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 11661 12065
YP_008320257.1 NC_021863_p57 N-acetylmuramoyl-L-alanine amidase/tail tip protein phrog_759 tail associated cell-wall hydrolase other 1 36136 38010
YP_008320232.1 NC_021863_p32 transcriptional activator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 15206 15379
YP_008320213.1 NC_021863_p13 single-stranded DNA-binding protein 1 phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7140 7778
YP_008320258.1 NC_021863_p58 tail fiber phrog_1125 tail fiber protein tail 1 38023 39195
YP_008320243.1 NC_021863_p43 phage head-tail adaptor phrog_25 head closure Hc1 connector 1 22901 23236
YP_008320262.1 NC_021863_p62 hypothetical protein phrog_1529 unknown function unknown function 1 42079 42279
YP_008320251.1 NC_021863_p51 minor structural protein phrog_663 minor head protein head and packaging 1 29484 31370
YP_008320224.1 NC_021863_p24 hypothetical protein phrog_258 virulence associated other 1 12619 12867
YP_008320225.1 NC_021863_p25 hypothetical protein phrog_467 unknown function unknown function 1 12880 13260
YP_008320256.1 NC_021863_p56 hypothetical protein phrog_276 unknown function unknown function 1 35700 35999
YP_008320205.1 NC_021863_p5 Cro/CI family transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 3749 4081
YP_008320218.1 NC_021863_p18 IstB-like ATP-binding protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 10486 11265
YP_008320254.1 NC_021863_p54 hypothetical protein phrog_300 tail fiber protein tail 1 35104 35511
YP_008320237.1 NC_021863_p37 SPP1 family portal protein phrog_64 portal protein head and packaging 1 18375 19793
YP_008320230.1 NC_021863_p30 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 14716 14952
YP_008320238.1 NC_021863_p38 SPP1 family phage head morphogenesis protein phrog_115 minor head protein head and packaging 1 19750 20712
YP_008320260.1 NC_021863_p60 holin phrog_962 holin lysis 1 39653 40090
YP_008320203.1 NC_021863_p3 hypothetical protein phrog_888 unknown function unknown function -1 2305 3030
YP_008320227.1 NC_021863_p27 hypothetical protein phrog_1034 unknown function unknown function 1 13601 13909
YP_008320233.1 NC_021863_p33 hypothetical protein phrog_2409 unknown function unknown function 1 15380 15745
YP_008320255.1 NC_021863_p55 hypothetical protein phrog_134 unknown function unknown function 1 35486 35659
YP_008320246.1 NC_021863_p46 major tail protein phrog_238 major tail protein tail 1 24073 24633
YP_008320223.1 NC_021863_p23 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12256 12618
YP_008320206.1 NC_021863_p6 Cro protein phrog_3 transcriptional repressor transcription regulation 1 4344 4538
YP_008320217.1 NC_021863_p17 phage replication protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 9706 10476
YP_008320231.1 NC_021863_p31 hypothetical protein phrog_555 unknown function unknown function 1 14977 15213
YP_008320239.1 NC_021863_p39 minor structural protein GP20 phrog_194 head scaffolding protein head and packaging 1 20810 21406
YP_008320220.1 NC_021863_p20 hypothetical protein phrog_433 unknown function unknown function 1 11430 11651
YP_008320236.1 NC_021863_p36 PBSX family terminase large subunit phrog_2 terminase large subunit head and packaging 1 17153 18361
YP_008320216.1 NC_021863_p16 hypothetical protein phrog_3634 unknown function unknown function -1 9001 9651
YP_008320241.1 NC_021863_p41 rho termination factor domain-containing protein phrog_390 Arc-like repressor transcription regulation 1 22268 22594
YP_008320207.1 NC_021863_p7 anti-repressor KilAC domain protein phrog_130 anti-repressor Ant transcription regulation 1 4538 5302
YP_008320215.1 NC_021863_p15 hypothetical protein phrog_398 unknown function unknown function 1 8217 8891
YP_008320250.1 NC_021863_p50 tail protein phrog_33 distal tail protein Dit tail 1 28538 29473
YP_008320212.1 NC_021863_p12 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 6661 7140
YP_008320226.1 NC_021863_p26 hypothetical protein phrog_98 unknown function unknown function 1 13257 13604
YP_008320219.1 NC_021863_p19 hypothetical protein phrog_809 transcriptional regulator transcription regulation 1 11259 11417
YP_008320244.1 NC_021863_p44 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 23223 23636
YP_008320210.1 NC_021863_p10 hypothetical protein phrog_369 unknown function unknown function 1 6128 6289
YP_008320248.1 NC_021863_p48 hypothetical protein phrog_1404 tail protein tail 1 25210 25551
YP_008320214.1 NC_021863_p14 single-stranded DNA-binding protein 2 phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 7778 8203
YP_008320261.1 NC_021863_p61 endolysin phrog_635 endolysin lysis 1 40071 41516
YP_008320222.1 NC_021863_p22 hypothetical protein phrog_299 unknown function unknown function 1 12070 12255
YP_008320249.1 NC_021863_p49 tape measure protein phrog_58 tail length tape measure protein tail 1 25554 28523
YP_008320229.1 NC_021863_p29 dUTP diphosphatase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 14143 14679
YP_008320204.1 NC_021863_p4 hypothetical protein phrog_1914 unknown function unknown function -1 3058 3732
YP_008320209.1 NC_021863_p9 hypothetical protein phrog_2222 unknown function unknown function -1 5718 5948
YP_008320228.1 NC_021863_p28 hypothetical protein phrog_266 unknown function unknown function 1 13902 14150
YP_008320259.1 NC_021863_p59 hypothetical protein phrog_1262 unknown function unknown function 1 39201 39596
YP_008320253.1 NC_021863_p53 minor tail protein phrog_257 minor tail protein tail 1 33281 35104
YP_008320240.1 NC_021863_p40 major capsid protein phrog_544 major head protein head and packaging 1 21427 22251
YP_008320235.1 NC_021863_p35 terminase small subunit phrog_1595 terminase small subunit head and packaging 1 16666 17160
YP_008320201.1 NC_021863_p1 phage recombinase/integrase phrog_95 integrase integration and excision -1 1 1386
YP_008320242.1 NC_021863_p42 phage gp6-like head-tail connector protein phrog_1161 head-tail adaptor connector 1 22594 22908
YP_008320247.1 NC_021863_p47 tail assembly protein phrog_183 tail chaperone protein tail 1 24695 25189
YP_008320208.1 NC_021863_p8 hypothetical protein phrog_2312 unknown function unknown function 1 5567 5743