| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022054 |
Definition |
Mycobacterium phage Muddy, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Mapvirus. |
DB of origin |
REFSEQ |
Length |
48228 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
71 |
%GC |
58.82 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008408957.1 | NC_022054_p71 | hypothetical protein | phrog_38300 | unknown function | unknown function | 1 | 47989 | 48222 |
| YP_008408916.1 | NC_022054_p30 | hypothetical protein | phrog_6071 | unknown function | unknown function | 1 | 24789 | 24989 |
| YP_008408928.1 | NC_022054_p42 | P-loop motif protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 30562 | 31407 |
| YP_008408917.1 | NC_022054_p31 | hypothetical protein | phrog_3798 | unknown function | unknown function | 1 | 24989 | 25399 |
| YP_008408914.1 | NC_022054_p28 | hypothetical protein | phrog_6116 | holin | lysis | 1 | 24290 | 24508 |
| YP_008408945.1 | NC_022054_p59 | hypothetical protein | phrog_28269 | unknown function | unknown function | 1 | 43886 | 44248 |
| YP_008408941.1 | NC_022054_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42547 | 42660 |
| YP_008408933.1 | NC_022054_p47 | hypothetical protein | phrog_13667 | unknown function | unknown function | -1 | 36045 | 36938 |
| YP_008408919.1 | NC_022054_p33 | hypothetical protein | phrog_16498 | unknown function | unknown function | 1 | 26661 | 27047 |
| YP_008408936.1 | NC_022054_p50 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 37942 | 39453 |
| YP_008408915.1 | NC_022054_p29 | hypothetical protein | phrog_4511 | unknown function | unknown function | 1 | 24505 | 24789 |
| YP_008408902.1 | NC_022054_p16 | ATPase | phrog_1550 | QueC-like queuosine biosynthesis | moron, auxiliary metabolic gene and host takeover | 1 | 10216 | 10767 |
| YP_008408892.1 | NC_022054_p6 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 3669 | 5192 |
| YP_008408887.1 | NC_022054_p1 | hypothetical protein | phrog_32197 | unknown function | unknown function | 1 | 159 | 518 |
| YP_008408903.1 | NC_022054_p17 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 10848 | 11647 |
| YP_008408893.1 | NC_022054_p7 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 5056 | 5763 |
| YP_008408911.1 | NC_022054_p25 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 21934 | 22959 |
| YP_008408910.1 | NC_022054_p24 | hypothetical protein | phrog_746 | minor tail protein | tail | 1 | 19606 | 21924 |
| YP_008408905.1 | NC_022054_p19 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 11647 | 15096 |
| YP_008408924.1 | NC_022054_p38 | RecB | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 28850 | 29134 |
| YP_008408955.1 | NC_022054_p69 | hypothetical protein | phrog_29561 | unknown function | unknown function | 1 | 47275 | 47598 |
| YP_008408929.1 | NC_022054_p43 | helicase | phrog_1218 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 31404 | 32420 |
| YP_008408938.1 | NC_022054_p52 | hypothetical protein | phrog_17534 | unknown function | unknown function | -1 | 39821 | 40003 |
| YP_008408931.1 | NC_022054_p45 | zinc binding CMP, dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 34730 | 35272 |
| YP_008408913.1 | NC_022054_p27 | LysA | phrog_1512 | endolysin | lysis | 1 | 23346 | 24293 |
| YP_008408935.1 | NC_022054_p49 | thymidylate kinase | phrog_761 | thymidylate kinase | other | -1 | 37393 | 37941 |
| YP_008408897.1 | NC_022054_p11 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 7957 | 8433 |
| YP_008408950.1 | NC_022054_p64 | hypothetical protein | phrog_1540 | unknown function | unknown function | 1 | 45656 | 46075 |
| YP_008408954.1 | NC_022054_p68 | HTH domain protein | phrog_32690 | unknown function | unknown function | 1 | 46862 | 47278 |
| YP_008408894.1 | NC_022054_p8 | hypothetical protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 6022 | 6618 |
| YP_008408953.1 | NC_022054_p67 | HNH endonuclease domain protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46593 | 46865 |
| YP_008408920.1 | NC_022054_p34 | HTH domain protein | phrog_15118 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 27193 | 27582 |
| YP_008408930.1 | NC_022054_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32410 | 34755 |
| YP_008408927.1 | NC_022054_p41 | DNA polymerase | phrog_14876 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29919 | 30575 |
| YP_008408942.1 | NC_022054_p56 | hypothetical protein | phrog_28441 | unknown function | unknown function | 1 | 42663 | 43520 |
| YP_008408926.1 | NC_022054_p40 | hypothetical protein | phrog_34418 | unknown function | unknown function | -1 | 29512 | 29901 |
| YP_008408939.1 | NC_022054_p53 | hypothetical protein | phrog_13148 | unknown function | unknown function | -1 | 40007 | 40426 |
| YP_008408952.1 | NC_022054_p66 | hypothetical protein | phrog_36932 | unknown function | unknown function | 1 | 46291 | 46569 |
| YP_008408937.1 | NC_022054_p51 | hypothetical protein | phrog_33511 | unknown function | unknown function | -1 | 39618 | 39824 |
| YP_008408908.1 | NC_022054_p22 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 18063 | 18506 |
| YP_008408951.1 | NC_022054_p65 | hypothetical protein | phrog_14975 | unknown function | unknown function | 1 | 46062 | 46298 |
| YP_008408956.1 | NC_022054_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47753 | 47989 |
| YP_008408925.1 | NC_022054_p39 | hypothetical protein | phrog_30353 | unknown function | unknown function | -1 | 29124 | 29519 |
| YP_008408895.1 | NC_022054_p9 | Capsid | phrog_10 | major head protein | head and packaging | 1 | 6658 | 7647 |
| YP_008408912.1 | NC_022054_p26 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22969 | 23331 |
| YP_008408906.1 | NC_022054_p20 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 15099 | 16211 |
| YP_008408907.1 | NC_022054_p21 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16213 | 18063 |
| YP_008408943.1 | NC_022054_p57 | hypothetical protein | phrog_34004 | unknown function | unknown function | 1 | 43517 | 43765 |
| YP_008408948.1 | NC_022054_p62 | hypothetical protein | phrog_31858 | unknown function | unknown function | 1 | 44966 | 45154 |
| YP_008408896.1 | NC_022054_p10 | hypothetical protein | phrog_35385 | unknown function | unknown function | 1 | 7650 | 7937 |
| YP_008408932.1 | NC_022054_p46 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 35269 | 36042 |
| YP_008408898.1 | NC_022054_p12 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 8430 | 8804 |
| YP_008408904.1 | NC_022054_p18 | tail assembly chaperone | phrog_32580 | tail assembly chaperone | tail | 1 | 10848 | 11240 |
| YP_008408947.1 | NC_022054_p61 | hypothetical protein | phrog_8685 | unknown function | unknown function | 1 | 44714 | 44962 |
| YP_008408921.1 | NC_022054_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27642 | 27809 |
| YP_008408889.1 | NC_022054_p3 | hypothetical protein | phrog_18656 | unknown function | unknown function | 1 | 827 | 1384 |
| YP_008408940.1 | NC_022054_p54 | RecA | phrog_3123 | unknown function | unknown function | 1 | 40499 | 42424 |
| YP_008408949.1 | NC_022054_p63 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 45162 | 45656 |
| YP_008408944.1 | NC_022054_p58 | hypothetical protein | phrog_11565 | unknown function | unknown function | 1 | 43758 | 43898 |
| YP_008408934.1 | NC_022054_p48 | dUTPase | phrog_12184 | nucleotide pyrophosphohydrolase | other | -1 | 36938 | 37396 |
| YP_008408899.1 | NC_022054_p13 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 8801 | 9121 |
| YP_008408888.1 | NC_022054_p2 | hypothetical protein | phrog_28565 | unknown function | unknown function | 1 | 518 | 787 |
| YP_008408923.1 | NC_022054_p37 | hypothetical protein | phrog_5855 | unknown function | unknown function | 1 | 28283 | 28795 |
| YP_008408922.1 | NC_022054_p36 | hypothetical protein | phrog_37790 | unknown function | unknown function | 1 | 27812 | 28225 |
| YP_008408901.1 | NC_022054_p15 | minor tail subunit | phrog_117 | major tail protein | tail | 1 | 9552 | 10193 |
| YP_008408946.1 | NC_022054_p60 | hypothetical protein | phrog_16564 | unknown function | unknown function | 1 | 44245 | 44913 |
| YP_008408890.1 | NC_022054_p4 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1535 | 2008 |
| YP_008408909.1 | NC_022054_p23 | hypothetical protein | phrog_1565 | minor tail protein | tail | 1 | 18503 | 19606 |
| YP_008408891.1 | NC_022054_p5 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2008 | 3672 |
| YP_008408900.1 | NC_022054_p14 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9121 | 9555 |
| YP_008408918.1 | NC_022054_p32 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 25495 | 26547 |