Genomic map of Mycobacterium phage Muddy (NC_022054)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022054
Definition
Mycobacterium phage Muddy, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Mapvirus.
DB of origin
REFSEQ
Length
48228
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
71
%GC
58.82
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008408957.1 NC_022054_p71 hypothetical protein phrog_38300 unknown function unknown function 1 47989 48222
YP_008408916.1 NC_022054_p30 hypothetical protein phrog_6071 unknown function unknown function 1 24789 24989
YP_008408928.1 NC_022054_p42 P-loop motif protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 30562 31407
YP_008408917.1 NC_022054_p31 hypothetical protein phrog_3798 unknown function unknown function 1 24989 25399
YP_008408914.1 NC_022054_p28 hypothetical protein phrog_6116 holin lysis 1 24290 24508
YP_008408945.1 NC_022054_p59 hypothetical protein phrog_28269 unknown function unknown function 1 43886 44248
YP_008408941.1 NC_022054_p55 hypothetical protein singleton unknown function unknown function 1 42547 42660
YP_008408933.1 NC_022054_p47 hypothetical protein phrog_13667 unknown function unknown function -1 36045 36938
YP_008408919.1 NC_022054_p33 hypothetical protein phrog_16498 unknown function unknown function 1 26661 27047
YP_008408936.1 NC_022054_p50 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 37942 39453
YP_008408915.1 NC_022054_p29 hypothetical protein phrog_4511 unknown function unknown function 1 24505 24789
YP_008408902.1 NC_022054_p16 ATPase phrog_1550 QueC-like queuosine biosynthesis moron, auxiliary metabolic gene and host takeover 1 10216 10767
YP_008408892.1 NC_022054_p6 portal protein phrog_104 portal protein head and packaging 1 3669 5192
YP_008408887.1 NC_022054_p1 hypothetical protein phrog_32197 unknown function unknown function 1 159 518
YP_008408903.1 NC_022054_p17 tail assembly chaperone phrog_1326 tail assembly chaperone tail 1 10848 11647
YP_008408893.1 NC_022054_p7 hypothetical protein phrog_193 head maturation protease head and packaging 1 5056 5763
YP_008408911.1 NC_022054_p25 hypothetical protein phrog_416 minor tail protein tail 1 21934 22959
YP_008408910.1 NC_022054_p24 hypothetical protein phrog_746 minor tail protein tail 1 19606 21924
YP_008408905.1 NC_022054_p19 tape measure protein phrog_971 endolysin lysis 1 11647 15096
YP_008408924.1 NC_022054_p38 RecB phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 28850 29134
YP_008408955.1 NC_022054_p69 hypothetical protein phrog_29561 unknown function unknown function 1 47275 47598
YP_008408929.1 NC_022054_p43 helicase phrog_1218 exonuclease DNA, RNA and nucleotide metabolism -1 31404 32420
YP_008408938.1 NC_022054_p52 hypothetical protein phrog_17534 unknown function unknown function -1 39821 40003
YP_008408931.1 NC_022054_p45 zinc binding CMP, dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 34730 35272
YP_008408913.1 NC_022054_p27 LysA phrog_1512 endolysin lysis 1 23346 24293
YP_008408935.1 NC_022054_p49 thymidylate kinase phrog_761 thymidylate kinase other -1 37393 37941
YP_008408897.1 NC_022054_p11 hypothetical protein phrog_1290 head-tail adaptor connector 1 7957 8433
YP_008408950.1 NC_022054_p64 hypothetical protein phrog_1540 unknown function unknown function 1 45656 46075
YP_008408954.1 NC_022054_p68 HTH domain protein phrog_32690 unknown function unknown function 1 46862 47278
YP_008408894.1 NC_022054_p8 hypothetical protein phrog_1793 head scaffolding protein head and packaging 1 6022 6618
YP_008408953.1 NC_022054_p67 HNH endonuclease domain protein phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 46593 46865
YP_008408920.1 NC_022054_p34 HTH domain protein phrog_15118 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 27193 27582
YP_008408930.1 NC_022054_p44 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 32410 34755
YP_008408927.1 NC_022054_p41 DNA polymerase phrog_14876 DNA polymerase DNA, RNA and nucleotide metabolism -1 29919 30575
YP_008408942.1 NC_022054_p56 hypothetical protein phrog_28441 unknown function unknown function 1 42663 43520
YP_008408926.1 NC_022054_p40 hypothetical protein phrog_34418 unknown function unknown function -1 29512 29901
YP_008408939.1 NC_022054_p53 hypothetical protein phrog_13148 unknown function unknown function -1 40007 40426
YP_008408952.1 NC_022054_p66 hypothetical protein phrog_36932 unknown function unknown function 1 46291 46569
YP_008408937.1 NC_022054_p51 hypothetical protein phrog_33511 unknown function unknown function -1 39618 39824
YP_008408908.1 NC_022054_p22 hypothetical protein phrog_1697 minor tail protein tail 1 18063 18506
YP_008408951.1 NC_022054_p65 hypothetical protein phrog_14975 unknown function unknown function 1 46062 46298
YP_008408956.1 NC_022054_p70 hypothetical protein singleton unknown function unknown function 1 47753 47989
YP_008408925.1 NC_022054_p39 hypothetical protein phrog_30353 unknown function unknown function -1 29124 29519
YP_008408895.1 NC_022054_p9 Capsid phrog_10 major head protein head and packaging 1 6658 7647
YP_008408912.1 NC_022054_p26 hypothetical protein phrog_240 head protein head and packaging 1 22969 23331
YP_008408906.1 NC_022054_p20 hypothetical protein phrog_106 minor tail protein tail 1 15099 16211
YP_008408907.1 NC_022054_p21 minor tail protein phrog_110 minor tail protein tail 1 16213 18063
YP_008408943.1 NC_022054_p57 hypothetical protein phrog_34004 unknown function unknown function 1 43517 43765
YP_008408948.1 NC_022054_p62 hypothetical protein phrog_31858 unknown function unknown function 1 44966 45154
YP_008408896.1 NC_022054_p10 hypothetical protein phrog_35385 unknown function unknown function 1 7650 7937
YP_008408932.1 NC_022054_p46 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 35269 36042
YP_008408898.1 NC_022054_p12 hypothetical protein phrog_763 head-tail adaptor connector 1 8430 8804
YP_008408904.1 NC_022054_p18 tail assembly chaperone phrog_32580 tail assembly chaperone tail 1 10848 11240
YP_008408947.1 NC_022054_p61 hypothetical protein phrog_8685 unknown function unknown function 1 44714 44962
YP_008408921.1 NC_022054_p35 hypothetical protein singleton unknown function unknown function 1 27642 27809
YP_008408889.1 NC_022054_p3 hypothetical protein phrog_18656 unknown function unknown function 1 827 1384
YP_008408940.1 NC_022054_p54 RecA phrog_3123 unknown function unknown function 1 40499 42424
YP_008408949.1 NC_022054_p63 hypothetical protein phrog_658 unknown function unknown function 1 45162 45656
YP_008408944.1 NC_022054_p58 hypothetical protein phrog_11565 unknown function unknown function 1 43758 43898
YP_008408934.1 NC_022054_p48 dUTPase phrog_12184 nucleotide pyrophosphohydrolase other -1 36938 37396
YP_008408899.1 NC_022054_p13 hypothetical protein phrog_387 neck protein connector 1 8801 9121
YP_008408888.1 NC_022054_p2 hypothetical protein phrog_28565 unknown function unknown function 1 518 787
YP_008408923.1 NC_022054_p37 hypothetical protein phrog_5855 unknown function unknown function 1 28283 28795
YP_008408922.1 NC_022054_p36 hypothetical protein phrog_37790 unknown function unknown function 1 27812 28225
YP_008408901.1 NC_022054_p15 minor tail subunit phrog_117 major tail protein tail 1 9552 10193
YP_008408946.1 NC_022054_p60 hypothetical protein phrog_16564 unknown function unknown function 1 44245 44913
YP_008408890.1 NC_022054_p4 hypothetical protein phrog_226 minor tail protein tail 1 1535 2008
YP_008408909.1 NC_022054_p23 hypothetical protein phrog_1565 minor tail protein tail 1 18503 19606
YP_008408891.1 NC_022054_p5 terminase large subunit phrog_9 terminase large subunit head and packaging 1 2008 3672
YP_008408900.1 NC_022054_p14 hypothetical protein phrog_123 tail terminator connector 1 9121 9555
YP_008408918.1 NC_022054_p32 hypothetical protein phrog_102 endolysin lysis 1 25495 26547