| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022055 |
Definition |
Mycobacterium phage Bobi, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
59179 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
107 |
%GC |
61.66 |
Number of singletons |
2 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008409034.1 | NC_022055_p77 | hypothetical protein | phrog_7170 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 47590 | 48216 |
| YP_008408963.1 | NC_022055_p6 | scaffolding protein | phrog_4638 | head scaffolding protein | head and packaging | 1 | 4408 | 4944 |
| YP_008409013.1 | NC_022055_p56 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 38447 | 39109 |
| YP_008408961.1 | NC_022055_p4 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2199 | 3620 |
| YP_008409043.1 | NC_022055_p86 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 50927 | 51202 |
| YP_008409019.1 | NC_022055_p62 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 40720 | 41055 |
| YP_008409014.1 | NC_022055_p57 | hypothetical protein | phrog_3416 | unknown function | unknown function | 1 | 39144 | 39935 |
| YP_008409011.1 | NC_022055_p54 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 38032 | 38223 |
| YP_008409048.1 | NC_022055_p91 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 52068 | 52268 |
| YP_008409064.1 | NC_022055_p107 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 58473 | 59087 |
| YP_008409046.1 | NC_022055_p89 | hypothetical protein | phrog_4152 | unknown function | unknown function | 1 | 51776 | 51904 |
| YP_008408976.1 | NC_022055_p19 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 17142 | 17990 |
| YP_008409039.1 | NC_022055_p82 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 49186 | 50037 |
| YP_008408994.1 | NC_022055_p37 | DnaQ | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 30079 | 30900 |
| YP_008408995.1 | NC_022055_p38 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30987 | 31202 |
| YP_008408960.1 | NC_022055_p3 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 671 | 2158 |
| YP_008408987.1 | NC_022055_p30 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26629 | 26766 |
| YP_008409029.1 | NC_022055_p72 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 44458 | 44685 |
| YP_008409003.1 | NC_022055_p46 | integrase | phrog_1 | integrase | integration and excision | 1 | 33890 | 35017 |
| YP_008408962.1 | NC_022055_p5 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 3604 | 4329 |
| YP_008409058.1 | NC_022055_p101 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 55542 | 55784 |
| YP_008409038.1 | NC_022055_p81 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 49048 | 49182 |
| YP_008409026.1 | NC_022055_p69 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43528 | 43884 |
| YP_008408981.1 | NC_022055_p24 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23952 | 24206 |
| YP_008408997.1 | NC_022055_p40 | hypothetical protein | phrog_357 | transcriptional repressor | transcription regulation | -1 | 31335 | 31847 |
| YP_008408958.1 | NC_022055_p1 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41 | 373 |
| YP_008409010.1 | NC_022055_p53 | HNH endonuclease | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37484 | 38035 |
| YP_008408990.1 | NC_022055_p33 | lysB | phrog_102 | endolysin | lysis | 1 | 28223 | 29221 |
| YP_008409042.1 | NC_022055_p85 | hypothetical protein | phrog_1546 | unknown function | unknown function | 1 | 50553 | 50930 |
| YP_008409052.1 | NC_022055_p95 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 53013 | 53294 |
| YP_008409024.1 | NC_022055_p67 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 42685 | 42939 |
| YP_008408968.1 | NC_022055_p11 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 6948 | 7352 |
| YP_008409057.1 | NC_022055_p100 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 55132 | 55545 |
| YP_008409012.1 | NC_022055_p55 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 38256 | 38450 |
| YP_008409009.1 | NC_022055_p52 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 37227 | 37487 |
| YP_008408993.1 | NC_022055_p36 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29859 | 30092 |
| YP_008409002.1 | NC_022055_p45 | HNH endonuclease | phrog_3593 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 33117 | 33890 |
| YP_008409061.1 | NC_022055_p104 | hypothetical protein | phrog_3297 | kinase | other | 1 | 57646 | 57942 |
| YP_008408965.1 | NC_022055_p8 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 5928 | 6299 |
| YP_008409047.1 | NC_022055_p90 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 51901 | 52092 |
| YP_008408964.1 | NC_022055_p7 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5007 | 5915 |
| YP_008408974.1 | NC_022055_p17 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13599 | 15308 |
| YP_008409033.1 | NC_022055_p76 | hypothetical protein | phrog_2060 | DNA methyltransferase | other | 1 | 47153 | 47593 |
| YP_008408959.1 | NC_022055_p2 | hypothetical protein | phrog_4479 | terminase small subunit | head and packaging | 1 | 445 | 699 |
| YP_008408973.1 | NC_022055_p16 | tapemeasure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9900 | 13598 |
| YP_008409063.1 | NC_022055_p106 | hypothetical protein | phrog_8053 | unknown function | unknown function | 1 | 58267 | 58476 |
| YP_008409056.1 | NC_022055_p99 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54932 | 55135 |
| YP_008408985.1 | NC_022055_p28 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 26180 | 26464 |
| YP_008409008.1 | NC_022055_p51 | hypothetical protein | phrog_5563 | unknown function | unknown function | 1 | 37108 | 37230 |
| YP_008409054.1 | NC_022055_p97 | hypothetical protein | phrog_8604 | unknown function | unknown function | 1 | 53974 | 54576 |
| YP_008408998.1 | NC_022055_p41 | hypothetical protein | phrog_33090 | unknown function | unknown function | -1 | 31844 | 32038 |
| YP_008409028.1 | NC_022055_p71 | hypothetical protein | phrog_3821 | unknown function | unknown function | 1 | 44117 | 44386 |
| YP_008408988.1 | NC_022055_p31 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26797 | 27072 |
| YP_008409021.1 | NC_022055_p64 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 41453 | 41953 |
| YP_008409062.1 | NC_022055_p105 | hypothetical protein | phrog_17935 | unknown function | unknown function | 1 | 58080 | 58241 |
| YP_008409023.1 | NC_022055_p66 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 42467 | 42697 |
| YP_008409031.1 | NC_022055_p74 | hypothetical protein | phrog_7789 | unknown function | unknown function | 1 | 46836 | 46925 |
| YP_008409000.1 | NC_022055_p43 | hypothetical protein | phrog_5970 | unknown function | unknown function | -1 | 32318 | 32563 |
| YP_008409001.1 | NC_022055_p44 | hypothetical protein | phrog_5130 | unknown function | unknown function | -1 | 32560 | 32748 |
| YP_008409049.1 | NC_022055_p92 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 52268 | 52405 |
| YP_008408977.1 | NC_022055_p20 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17987 | 20524 |
| YP_008408970.1 | NC_022055_p13 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8406 | 9342 |
| YP_008409005.1 | NC_022055_p48 | immunity repressor | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 35798 | 36367 |
| YP_008408984.1 | NC_022055_p27 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25838 | 26029 |
| YP_008408999.1 | NC_022055_p42 | hypothetical protein | phrog_14103 | unknown function | unknown function | -1 | 32035 | 32232 |
| YP_008409045.1 | NC_022055_p88 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 51408 | 51779 |
| YP_008409053.1 | NC_022055_p96 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 53291 | 53977 |
| YP_008408989.1 | NC_022055_p32 | lysA | phrog_700 | endolysin | lysis | 1 | 27069 | 28223 |
| YP_008409022.1 | NC_022055_p65 | HTH DNA binding domain protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41950 | 42315 |
| YP_008408983.1 | NC_022055_p26 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24854 | 25834 |
| YP_008409036.1 | NC_022055_p79 | hypothetical protein | phrog_464 | unknown function | unknown function | 1 | 48352 | 48687 |
| YP_008408975.1 | NC_022055_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 15396 | 17105 |
| YP_008408992.1 | NC_022055_p35 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 29460 | 29834 |
| YP_008409050.1 | NC_022055_p93 | hypothetical protein | phrog_5186 | unknown function | unknown function | 1 | 52402 | 52575 |
| YP_008408996.1 | NC_022055_p39 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 31195 | 31287 |
| YP_008408980.1 | NC_022055_p23 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23588 | 23929 |
| YP_008409025.1 | NC_022055_p68 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 42953 | 43531 |
| YP_008409037.1 | NC_022055_p80 | hypothetical protein | phrog_11096 | unknown function | unknown function | 1 | 48680 | 49051 |
| YP_008408978.1 | NC_022055_p21 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 20521 | 22407 |
| YP_008409020.1 | NC_022055_p63 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 41055 | 41456 |
| YP_008409004.1 | NC_022055_p47 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 35080 | 35532 |
| YP_008409051.1 | NC_022055_p94 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 52628 | 53020 |
| YP_008409059.1 | NC_022055_p102 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55781 | 57391 |
| YP_008409017.1 | NC_022055_p60 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 40250 | 40531 |
| YP_008409018.1 | NC_022055_p61 | hypothetical protein | phrog_7605 | unknown function | unknown function | 1 | 40528 | 40716 |
| YP_008409016.1 | NC_022055_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40123 | 40212 |
| YP_008409032.1 | NC_022055_p75 | DNA methylase | phrog_3008 | DNA methyltransferase | other | 1 | 46900 | 47151 |
| YP_008409007.1 | NC_022055_p50 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 36824 | 37111 |
| YP_008409006.1 | NC_022055_p49 | CRO protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 36534 | 36767 |
| YP_008408979.1 | NC_022055_p22 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 22410 | 23570 |
| YP_008408991.1 | NC_022055_p34 | holin | phrog_443 | holin | lysis | 1 | 29230 | 29463 |
| YP_008409035.1 | NC_022055_p78 | hypothetical protein | phrog_5921 | unknown function | unknown function | 1 | 48209 | 48355 |
| YP_008409015.1 | NC_022055_p58 | hypothetical protein | phrog_11849 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 39932 | 40084 |
| YP_008409030.1 | NC_022055_p73 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 44682 | 46739 |
| YP_008409044.1 | NC_022055_p87 | hypothetical protein | phrog_3447 | unknown function | unknown function | 1 | 51199 | 51411 |
| YP_008409041.1 | NC_022055_p84 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 50362 | 50556 |
| YP_008409027.1 | NC_022055_p70 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 43891 | 44043 |
| YP_008409055.1 | NC_022055_p98 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 54767 | 54931 |
| YP_008408982.1 | NC_022055_p25 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 24219 | 24857 |
| YP_008408967.1 | NC_022055_p10 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6632 | 6958 |
| YP_008409040.1 | NC_022055_p83 | hypothetical protein | phrog_7196 | unknown function | unknown function | 1 | 50174 | 50365 |
| YP_008409060.1 | NC_022055_p103 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 57376 | 57606 |
| YP_008408972.1 | NC_022055_p15 | HNH endonuclease | phrog_3593 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9361 | 9900 |
| YP_008408971.1 | NC_022055_p14 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8406 | 8957 |
| YP_008408966.1 | NC_022055_p9 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6296 | 6625 |
| YP_008408969.1 | NC_022055_p12 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7460 | 8269 |
| YP_008408986.1 | NC_022055_p29 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 26471 | 26632 |