| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022056 |
Definition |
Mycobacterium phage Hamulus, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
57155 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
105 |
%GC |
61.75 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008409149.1 | NC_022056_p85 | hypothetical protein | phrog_38387 | unknown function | unknown function | 1 | 49992 | 50075 |
| YP_008409065.1 | NC_022056_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 110 | 565 |
| YP_008409067.1 | NC_022056_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2256 | 3626 |
| YP_008409078.1 | NC_022056_p14 | tape measure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9538 | 13017 |
| YP_008409145.1 | NC_022056_p81 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 48864 | 49142 |
| YP_008409112.1 | NC_022056_p48 | hypothetical protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 36115 | 37119 |
| YP_008409167.1 | NC_022056_p103 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 55855 | 56067 |
| YP_008409169.1 | NC_022056_p105 | HNH domain protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 56687 | 57013 |
| YP_008409090.1 | NC_022056_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25595 | 25891 |
| YP_008409153.1 | NC_022056_p89 | ATP binding domain protein | phrog_1545 | unknown function | unknown function | 1 | 50612 | 50749 |
| YP_008409156.1 | NC_022056_p92 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 51197 | 51526 |
| YP_008409144.1 | NC_022056_p80 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 48587 | 48871 |
| YP_008409163.1 | NC_022056_p99 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 53533 | 53775 |
| YP_008409082.1 | NC_022056_p18 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 17403 | 19940 |
| YP_008409155.1 | NC_022056_p91 | hypothetical protein | phrog_4126 | unknown function | unknown function | 1 | 51081 | 51200 |
| YP_008409094.1 | NC_022056_p30 | LysA | phrog_700 | endolysin | lysis | 1 | 26480 | 27646 |
| YP_008409087.1 | NC_022056_p23 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23638 | 24276 |
| YP_008409076.1 | NC_022056_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8583 | 9519 |
| YP_008409134.1 | NC_022056_p70 | hypothetical protein | phrog_8485 | unknown function | unknown function | -1 | 44772 | 45149 |
| YP_008409113.1 | NC_022056_p49 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 37116 | 37331 |
| YP_008409081.1 | NC_022056_p17 | hypothetical protein | phrog_732 | minor tail protein | tail | 1 | 16576 | 17406 |
| YP_008409116.1 | NC_022056_p52 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 37611 | 37799 |
| YP_008409099.1 | NC_022056_p35 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 30127 | 30387 |
| YP_008409137.1 | NC_022056_p73 | modification methylase RSRI | phrog_67 | DNA methyltransferase | other | 1 | 46052 | 46708 |
| YP_008409091.1 | NC_022056_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25898 | 26044 |
| YP_008409150.1 | NC_022056_p86 | hypothetical protein | phrog_4152 | unknown function | unknown function | 1 | 50072 | 50248 |
| YP_008409160.1 | NC_022056_p96 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 52749 | 52916 |
| YP_008409132.1 | NC_022056_p68 | cytosine methyl transferase | phrog_116 | DNA methyltransferase | other | 1 | 43189 | 44649 |
| YP_008409093.1 | NC_022056_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26232 | 26483 |
| YP_008409096.1 | NC_022056_p32 | LysB | phrog_102 | endolysin | lysis | 1 | 28436 | 29479 |
| YP_008409069.1 | NC_022056_p5 | scaffold protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4451 | 5044 |
| YP_008409107.1 | NC_022056_p43 | integrase XerD | phrog_1 | integrase | integration and excision | 1 | 32980 | 34269 |
| YP_008409133.1 | NC_022056_p69 | DNA binding domain protein | phrog_6506 | Arc-like repressor | transcription regulation | -1 | 44618 | 44779 |
| YP_008409142.1 | NC_022056_p78 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 48238 | 48432 |
| YP_008409077.1 | NC_022056_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8583 | 9134 |
| YP_008409135.1 | NC_022056_p71 | hypothetical protein | phrog_8611 | unknown function | unknown function | -1 | 45156 | 45488 |
| YP_008409125.1 | NC_022056_p61 | TC3 transposase | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40756 | 41121 |
| YP_008409147.1 | NC_022056_p83 | hypothetical protein | phrog_3381 | unknown function | unknown function | 1 | 49332 | 49535 |
| YP_008409114.1 | NC_022056_p50 | hypothetical protein | phrog_5563 | unknown function | unknown function | 1 | 37328 | 37420 |
| YP_008409101.1 | NC_022056_p37 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 31270 | 31503 |
| YP_008409136.1 | NC_022056_p72 | hypothetical protein | phrog_2060 | DNA methyltransferase | other | 1 | 45640 | 45987 |
| YP_008409161.1 | NC_022056_p97 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 52929 | 53126 |
| YP_008409128.1 | NC_022056_p64 | DNA repair domain | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 41759 | 42337 |
| YP_008409118.1 | NC_022056_p54 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 38023 | 38607 |
| YP_008409117.1 | NC_022056_p53 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 37796 | 38026 |
| YP_008409131.1 | NC_022056_p67 | hypothetical protein | phrog_3821 | unknown function | unknown function | 1 | 42842 | 43192 |
| YP_008409089.1 | NC_022056_p25 | HTH DNA-binding domain protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25245 | 25445 |
| YP_008409105.1 | NC_022056_p41 | hypothetical protein | phrog_5254 | unknown function | unknown function | -1 | 32190 | 32432 |
| YP_008409088.1 | NC_022056_p24 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24276 | 25241 |
| YP_008409115.1 | NC_022056_p51 | TOR inhibition protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 37417 | 37614 |
| YP_008409108.1 | NC_022056_p44 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 34346 | 34801 |
| YP_008409140.1 | NC_022056_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47691 | 47852 |
| YP_008409129.1 | NC_022056_p65 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42334 | 42690 |
| YP_008409106.1 | NC_022056_p42 | hypothetical protein | phrog_22055 | unknown function | unknown function | -1 | 32429 | 32605 |
| YP_008409165.1 | NC_022056_p101 | polypeptide N-acetylglucos-aminyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 53946 | 55382 |
| YP_008409120.1 | NC_022056_p56 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 39053 | 39334 |
| YP_008409124.1 | NC_022056_p60 | HTH domain protein | phrog_2096 | unknown function | unknown function | 1 | 40256 | 40759 |
| YP_008409100.1 | NC_022056_p36 | DnaQ-like protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 30374 | 31195 |
| YP_008409122.1 | NC_022056_p58 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 39523 | 39858 |
| YP_008409071.1 | NC_022056_p7 | hypothetical protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5884 | 6450 |
| YP_008409119.1 | NC_022056_p55 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 38658 | 39029 |
| YP_008409104.1 | NC_022056_p40 | HTH domain protein | phrog_5497 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31992 | 32189 |
| YP_008409075.1 | NC_022056_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7635 | 8444 |
| YP_008409083.1 | NC_022056_p19 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19937 | 21823 |
| YP_008409070.1 | NC_022056_p6 | Capsid | phrog_267 | major head protein | head and packaging | 1 | 5063 | 5884 |
| YP_008409092.1 | NC_022056_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26041 | 26181 |
| YP_008409168.1 | NC_022056_p104 | N-acetylglucos-aminyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56064 | 56687 |
| YP_008409138.1 | NC_022056_p74 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 46705 | 46839 |
| YP_008409098.1 | NC_022056_p34 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 29756 | 30130 |
| YP_008409162.1 | NC_022056_p98 | trigger factor | phrog_1186 | unknown function | unknown function | 1 | 53123 | 53536 |
| YP_008409143.1 | NC_022056_p79 | hypothetical protein | phrog_5892 | unknown function | unknown function | 1 | 48429 | 48590 |
| YP_008409139.1 | NC_022056_p75 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 46843 | 47694 |
| YP_008409157.1 | NC_022056_p93 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 51523 | 51786 |
| YP_008409085.1 | NC_022056_p21 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23004 | 23345 |
| YP_008409166.1 | NC_022056_p102 | Ser/Thr kinase | phrog_3297 | kinase | other | 1 | 55385 | 55858 |
| YP_008409072.1 | NC_022056_p8 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6447 | 6779 |
| YP_008409126.1 | NC_022056_p62 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 41273 | 41503 |
| YP_008409127.1 | NC_022056_p63 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 41500 | 41745 |
| YP_008409164.1 | NC_022056_p100 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 53768 | 53929 |
| YP_008409111.1 | NC_022056_p47 | hypothetical protein | phrog_6267 | transcriptional repressor | transcription regulation | 1 | 35751 | 36056 |
| YP_008409066.1 | NC_022056_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 588 | 2225 |
| YP_008409068.1 | NC_022056_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3613 | 4368 |
| YP_008409152.1 | NC_022056_p88 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50433 | 50612 |
| YP_008409103.1 | NC_022056_p39 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 31837 | 31995 |
| YP_008409095.1 | NC_022056_p31 | HNH homing endonuclease domain protein | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 27654 | 28418 |
| YP_008409086.1 | NC_022056_p22 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23368 | 23622 |
| YP_008409084.1 | NC_022056_p20 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21820 | 22986 |
| YP_008409123.1 | NC_022056_p59 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 39858 | 40259 |
| YP_008409158.1 | NC_022056_p94 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 51783 | 52418 |
| YP_008409148.1 | NC_022056_p84 | hypothetical protein | phrog_11026 | unknown function | unknown function | 1 | 49537 | 49995 |
| YP_008409159.1 | NC_022056_p95 | DNA binding domain protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 52528 | 52752 |
| YP_008409102.1 | NC_022056_p38 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 31496 | 31588 |
| YP_008409141.1 | NC_022056_p77 | hypothetical protein | phrog_11384 | unknown function | unknown function | 1 | 47954 | 48241 |
| YP_008409154.1 | NC_022056_p90 | hypothetical protein | phrog_7643 | unknown function | unknown function | 1 | 50746 | 51084 |
| YP_008409110.1 | NC_022056_p46 | HTH domain protein | phrog_3949 | transcriptional repressor | transcription regulation | -1 | 35064 | 35597 |
| YP_008409073.1 | NC_022056_p9 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6782 | 7111 |
| YP_008409074.1 | NC_022056_p10 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7098 | 7505 |
| YP_008409151.1 | NC_022056_p87 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 50245 | 50436 |
| YP_008409080.1 | NC_022056_p16 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 14812 | 16521 |
| YP_008409121.1 | NC_022056_p57 | hypothetical protein | phrog_7605 | unknown function | unknown function | 1 | 39331 | 39519 |
| YP_008409079.1 | NC_022056_p15 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 13018 | 14727 |
| YP_008409109.1 | NC_022056_p45 | hypothetical protein | phrog_7613 | unknown function | unknown function | -1 | 34915 | 35061 |
| YP_008409130.1 | NC_022056_p66 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 42697 | 42849 |
| YP_008409146.1 | NC_022056_p82 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | 1 | 49139 | 49306 |
| YP_008409097.1 | NC_022056_p33 | holin | phrog_443 | holin | lysis | 1 | 29517 | 29759 |