| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022062 |
Definition |
Mycobacterium phage Trouble, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52102 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
63.6 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008409741.1 | NC_022062_p9 | LysA | phrog_317 | endolysin | lysis | 1 | 4899 | 6332 |
| YP_008409779.1 | NC_022062_p47 | hypothetical protein | phrog_6173 | unknown function | unknown function | -1 | 35925 | 36179 |
| YP_008409756.1 | NC_022062_p24 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16670 | 19141 |
| YP_008409765.1 | NC_022062_p33 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26765 | 28243 |
| YP_008409746.1 | NC_022062_p14 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11374 | 11886 |
| YP_008409735.1 | NC_022062_p3 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1535 | 1765 |
| YP_008409812.1 | NC_022062_p80 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 48124 | 48312 |
| YP_008409755.1 | NC_022062_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15760 | 16236 |
| YP_008409803.1 | NC_022062_p71 | hypothetical protein | phrog_13709 | unknown function | unknown function | -1 | 45009 | 45224 |
| YP_008409813.1 | NC_022062_p81 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48312 | 48512 |
| YP_008409751.1 | NC_022062_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14032 | 14427 |
| YP_008409814.1 | NC_022062_p82 | hypothetical protein | phrog_11336 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 48509 | 48703 |
| YP_008409749.1 | NC_022062_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13221 | 13670 |
| YP_008409820.1 | NC_022062_p88 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 50124 | 50243 |
| YP_008409787.1 | NC_022062_p55 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 39141 | 39314 |
| YP_008409771.1 | NC_022062_p39 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31995 | 32267 |
| YP_008409770.1 | NC_022062_p38 | serine integrase | phrog_95 | integrase | integration and excision | 1 | 30371 | 31873 |
| YP_008409783.1 | NC_022062_p51 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 37256 | 37462 |
| YP_008409736.1 | NC_022062_p4 | HNH domain protein | phrog_3593 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2065 | 2544 |
| YP_008409810.1 | NC_022062_p78 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47658 | 47927 |
| YP_008409792.1 | NC_022062_p60 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40722 | 40856 |
| YP_008409798.1 | NC_022062_p66 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42604 | 42897 |
| YP_008409816.1 | NC_022062_p84 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48926 | 49075 |
| YP_008409802.1 | NC_022062_p70 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44194 | 45030 |
| YP_008409769.1 | NC_022062_p37 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29935 | 30219 |
| YP_008409762.1 | NC_022062_p30 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 24218 | 24550 |
| YP_008409754.1 | NC_022062_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15760 | 16658 |
| YP_008409811.1 | NC_022062_p79 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47924 | 48127 |
| YP_008409773.1 | NC_022062_p41 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32650 | 32820 |
| YP_008409788.1 | NC_022062_p56 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 39311 | 39709 |
| YP_008409781.1 | NC_022062_p49 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 36437 | 36916 |
| YP_008409782.1 | NC_022062_p50 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 36951 | 37283 |
| YP_008409797.1 | NC_022062_p65 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 42461 | 42607 |
| YP_008409805.1 | NC_022062_p73 | hypothetical protein | phrog_3851 | unknown function | unknown function | -1 | 45541 | 45855 |
| YP_008409743.1 | NC_022062_p11 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 7310 | 8998 |
| YP_008409790.1 | NC_022062_p58 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 40073 | 40588 |
| YP_008409744.1 | NC_022062_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8995 | 10437 |
| YP_008409817.1 | NC_022062_p85 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 49072 | 49293 |
| YP_008409774.1 | NC_022062_p42 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32817 | 32903 |
| YP_008409822.1 | NC_022062_p90 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 50598 | 50804 |
| YP_008409739.1 | NC_022062_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4374 | 4634 |
| YP_008409815.1 | NC_022062_p83 | hypothetical protein | phrog_8345 | unknown function | unknown function | -1 | 48700 | 48906 |
| YP_008409750.1 | NC_022062_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13670 | 14032 |
| YP_008409776.1 | NC_022062_p44 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 33190 | 33549 |
| YP_008409791.1 | NC_022062_p59 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40567 | 40725 |
| YP_008409796.1 | NC_022062_p64 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41665 | 42474 |
| YP_008409824.1 | NC_022062_p92 | hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 51117 | 51305 |
| YP_008409742.1 | NC_022062_p10 | LysB | phrog_102 | endolysin | lysis | 1 | 6322 | 7290 |
| YP_008409763.1 | NC_022062_p31 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24547 | 24894 |
| YP_008409800.1 | NC_022062_p68 | DNA methyltransferase | phrog_67 | DNA methyltransferase | other | -1 | 43082 | 43948 |
| YP_008409825.1 | NC_022062_p93 | hypothetical protein | phrog_18559 | unknown function | unknown function | -1 | 51348 | 51497 |
| YP_008409826.1 | NC_022062_p94 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51570 | 51815 |
| YP_008409745.1 | NC_022062_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10434 | 11315 |
| YP_008409819.1 | NC_022062_p87 | hypothetical protein | phrog_5533 | unknown function | unknown function | -1 | 49909 | 50127 |
| YP_008409764.1 | NC_022062_p32 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 24919 | 26772 |
| YP_008409821.1 | NC_022062_p89 | hypothetical protein | phrog_2985 | unknown function | unknown function | 1 | 50275 | 50514 |
| YP_008409759.1 | NC_022062_p27 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21738 | 21920 |
| YP_008409799.1 | NC_022062_p67 | DNA binding domain protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 42894 | 43085 |
| YP_008409778.1 | NC_022062_p46 | DNA polymerase A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 34073 | 35902 |
| YP_008409738.1 | NC_022062_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3659 | 4360 |
| YP_008409808.1 | NC_022062_p76 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47063 | 47362 |
| YP_008409780.1 | NC_022062_p48 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 36176 | 36406 |
| YP_008409777.1 | NC_022062_p45 | HNH domain protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 33572 | 34048 |
| YP_008409761.1 | NC_022062_p29 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23760 | 24206 |
| YP_008409806.1 | NC_022062_p74 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45852 | 46247 |
| YP_008409775.1 | NC_022062_p43 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32909 | 33193 |
| YP_008409748.1 | NC_022062_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12961 | 13221 |
| YP_008409753.1 | NC_022062_p21 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 14886 | 15737 |
| YP_008409733.1 | NC_022062_p1 | HNH domain protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 534 | 893 |
| YP_008409752.1 | NC_022062_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14431 | 14877 |
| YP_008409767.1 | NC_022062_p35 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28666 | 28857 |
| YP_008409760.1 | NC_022062_p28 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 21920 | 23722 |
| YP_008409758.1 | NC_022062_p26 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 19662 | 21719 |
| YP_008409766.1 | NC_022062_p34 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28333 | 28656 |
| YP_008409804.1 | NC_022062_p72 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45221 | 45544 |
| YP_008409809.1 | NC_022062_p77 | hypothetical protein | phrog_7977 | unknown function | unknown function | -1 | 47355 | 47657 |
| YP_008409784.1 | NC_022062_p52 | RNA polymerase sigma factor | phrog_354 | sigma-K factor | transcription regulation | -1 | 37459 | 38244 |
| YP_008409740.1 | NC_022062_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4642 | 4899 |
| YP_008409823.1 | NC_022062_p91 | hypothetical protein | phrog_17708 | unknown function | unknown function | 1 | 50852 | 51013 |
| YP_008409793.1 | NC_022062_p61 | Endo VII protein | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40853 | 41329 |
| YP_008409801.1 | NC_022062_p69 | hypothetical protein | phrog_16650 | unknown function | unknown function | -1 | 43954 | 44163 |
| YP_008409795.1 | NC_022062_p63 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 41399 | 41668 |
| YP_008409737.1 | NC_022062_p5 | tail protein | phrog_1197 | tail protein | tail | 1 | 2579 | 3649 |
| YP_008409794.1 | NC_022062_p62 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 41316 | 41402 |
| YP_008409786.1 | NC_022062_p54 | RDF protein | phrog_221 | metallo-phosphoesterase | other | -1 | 38377 | 39144 |
| YP_008409747.1 | NC_022062_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11897 | 12904 |
| YP_008409807.1 | NC_022062_p75 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46289 | 46975 |
| YP_008409818.1 | NC_022062_p86 | hypothetical protein | phrog_5017 | unknown function | unknown function | -1 | 49562 | 49909 |
| YP_008409772.1 | NC_022062_p40 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 32264 | 32653 |
| YP_008409785.1 | NC_022062_p53 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 38237 | 38377 |
| YP_008409789.1 | NC_022062_p57 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39706 | 40284 |
| YP_008409734.1 | NC_022062_p2 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 928 | 1362 |
| YP_008409768.1 | NC_022062_p36 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28854 | 29813 |
| YP_008409757.1 | NC_022062_p25 | HNH domain protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 19144 | 19638 |